mRNA_M-pyrifera_M_contig7998.18757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7998.18757.1
Unique NamemRNA_M-pyrifera_M_contig7998.18757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: A0A6H5J638_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J638_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   10 ERWLEGVVRLLGFFCLNNRKHQEVLQWGSP-PTVLVRLCNLPFR 138
            E  LEGV+ LLG+FCL+NR+HQEVL+ G P P +L RLC+LPFR
Sbjct: 1474 EGCLEGVLTLLGYFCLDNREHQEVLRRGGPFPAILSRLCDLPFR 1517
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: D7G5K8_ECTSI (Scaper protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K8_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   10 ERWLEGVVRLLGFFCLNNRKHQEVLQWGSP-PTVLVRLCNLPFR 138
            E  LEGV+ LLG+FCL+NR+HQEVL+   P P +L RLC+LPFR
Sbjct: 2337 EGCLEGVLTLLGYFCLDNREHQEVLRREGPFPAILARLCDLPFR 2380
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: A0A7S0NAN4_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0NAN4_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 1.980e-7
Identity = 19/45 (42.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 SELERWLEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPF 135
            + ++  +E V+ L G+FCL    HQ+V++WG+ PT+L +LC++PF
Sbjct:  238 APVQALMEAVLLLTGYFCLLQPAHQDVMRWGTSPTILQKLCSVPF 282
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: UPI001E675543 (S phase cyclin A-associated protein in the endoplasmic reticulum-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E675543)

HSP 1 Score: 51.2 bits (121), Expect = 3.350e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   19 LEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPFR 138
            L  ++ L+GFF +NNR++Q V+Q G  P+VL +LCNLP++
Sbjct: 1765 LHNIIPLVGFFAVNNRENQMVIQSGEVPSVLQQLCNLPWQ 1804
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: A0A423TTZ5_PENVA (C2H2-type domain-containing protein n=3 Tax=Penaeus TaxID=133894 RepID=A0A423TTZ5_PENVA)

HSP 1 Score: 50.4 bits (119), Expect = 6.260e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   19 LEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPFR 138
            L  V+ L+GFF +NN+++Q V+Q G  P+VL +LCNLP++
Sbjct:  736 LHNVIPLVGFFAVNNKENQMVIQSGEMPSVLQQLCNLPWQ 775
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: UPI0018A7B279 (S phase cyclin A-associated protein in the endoplasmic reticulum-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A7B279)

HSP 1 Score: 50.4 bits (119), Expect = 6.260e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   19 LEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPFR 138
            L  V+ L+GFF +NN+++Q V+Q G  P+VL +LCNLP++
Sbjct: 1062 LHNVIPLVGFFAVNNKENQMVIQSGEMPSVLQQLCNLPWQ 1101
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: UPI001C7173AD (S phase cyclin A-associated protein in the endoplasmic reticulum-like isoform X1 n=5 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C7173AD)

HSP 1 Score: 50.4 bits (119), Expect = 6.270e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   19 LEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPFR 138
            L  V+ L+GFF +NN+++Q V+Q G  P+VL +LCNLP++
Sbjct: 1773 LHNVIPLVGFFAVNNKENQMVIQSGEMPSVLQQLCNLPWQ 1812
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: UPI001C46BA1C (S phase cyclin A-associated protein in the endoplasmic reticulum-like isoform X1 n=6 Tax=Homarus americanus TaxID=6706 RepID=UPI001C46BA1C)

HSP 1 Score: 50.1 bits (118), Expect = 8.570e-6
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   19 LEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPFR 138
            L  ++ L+GFF +NN+++Q V+Q G  P+VL +LCNLP++
Sbjct: 1768 LHNIIPLVGFFAVNNKENQMVIQSGEVPSVLQQLCNLPWQ 1807
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: A0A0P4VQV6_SCYOL (SCAPER_N domain-containing protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4VQV6_SCYOL)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   19 LEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPFR 138
            L  ++ L+GFF +NN+++Q V+Q G  P+VL +LCNLP++
Sbjct: 1728 LHNIIPLVGFFAVNNKENQIVIQSGEVPSVLQQLCNLPWQ 1767
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BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Match: E0VH61_PEDHC (U1-type domain-containing protein n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VH61_PEDHC)

HSP 1 Score: 49.3 bits (116), Expect = 1.610e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   19 LEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPF 135
            L  VV ++G+F + +R +Q +LQ GS PTVL +LCNLPF
Sbjct: 1598 LHEVVYVVGYFAVQHRDNQMILQSGSTPTVLQQLCNLPF 1636
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7998.18757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5J638_9PHAE8.000e-1165.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K8_ECTSI5.220e-1063.64Scaper protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S0NAN4_9CHLO1.980e-742.22Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
UPI001E6755433.350e-650.00S phase cyclin A-associated protein in the endopla... [more]
A0A423TTZ5_PENVA6.260e-650.00C2H2-type domain-containing protein n=3 Tax=Penaeu... [more]
UPI0018A7B2796.260e-650.00S phase cyclin A-associated protein in the endopla... [more]
UPI001C7173AD6.270e-650.00S phase cyclin A-associated protein in the endopla... [more]
UPI001C46BA1C8.570e-647.50S phase cyclin A-associated protein in the endopla... [more]
A0A0P4VQV6_SCYOL1.170e-547.50SCAPER_N domain-containing protein n=3 Tax=Portuni... [more]
E0VH61_PEDHC1.610e-553.85U1-type domain-containing protein n=1 Tax=Pediculu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7998contigM-pyrifera_M_contig7998:1359..1496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D7G5K8
Preferred nameSCAPER
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0015630,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG OGsKOG4722@1,KOG4722@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.45231-CDS-M-pyrifera_M_contig7998:1358..14961622816703.45231-CDS-M-pyrifera_M_contig7998:1358..1496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7998 1359..1496 +
1692278129.3229165-CDS-M-pyrifera_M_contig7998:1358..14961692278129.3229165-CDS-M-pyrifera_M_contig7998:1358..1496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7998 1359..1496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7998.18757.1prot_M-pyrifera_M_contig7998.18757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7998 1359..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7998.18757.1

>prot_M-pyrifera_M_contig7998.18757.1 ID=prot_M-pyrifera_M_contig7998.18757.1|Name=mRNA_M-pyrifera_M_contig7998.18757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
SELERWLEGVVRLLGFFCLNNRKHQEVLQWGSPPTVLVRLCNLPFR
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mRNA from alignment at M-pyrifera_M_contig7998:1359..1496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7998.18757.1 ID=mRNA_M-pyrifera_M_contig7998.18757.1|Name=mRNA_M-pyrifera_M_contig7998.18757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig7998:1359..1496+ (Macrocystis pyrifera P11B4 male)
TCGGAGTTGGAGAGGTGGCTGGAAGGCGTTGTTCGCCTGTTGGGCTTCTT
CTGCCTCAACAATCGAAAACATCAGGAGGTCCTGCAATGGGGATCGCCGC
CGACGGTGCTGGTTCGGCTGTGCAACCTGCCTTTCCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7998:1359..1496+

>mRNA_M-pyrifera_M_contig7998.18757.1 ID=mRNA_M-pyrifera_M_contig7998.18757.1|Name=mRNA_M-pyrifera_M_contig7998.18757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig7998:1359..1496+ (Macrocystis pyrifera P11B4 male)
TCGGAGTTGGAGAGGTGGCTGGAAGGCGTTGTTCGCCTGTTGGGCTTCTT
CTGCCTCAACAATCGAAAACATCAGGAGGTCCTGCAATGGGGATCGCCGC
CGACGGTGCTGGTTCGGCTGTGCAACCTGCCTTTCCGGTCGGAGTTGGAG
AGGTGGCTGGAAGGCGTTGTTCGCCTGTTGGGCTTCTTCTGCCTCAACAA
TCGAAAACATCAGGAGGTCCTGCAATGGGGATCGCCGCCGACGGTGCTGG
TTCGGCTGTGCAACCTGCCTTTCCGG
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