mRNA_M-pyrifera_M_contig79928.18748.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79928.18748.1
Unique NamemRNA_M-pyrifera_M_contig79928.18748.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79928.18748.1 vs. uniprot
Match: A0A1X7VJI1_AMPQE (CKK domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VJI1_AMPQE)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-12
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:  172 SNALRVRNALKHVCLAAPRASDTLREAELAMQDTIWPSFLILFRSPESKLYKGLYGFDPVTNLARKLHGNGPTALSTDLVRAVFKYSTGARAFEKLPTTALSIATDAVAIK 504
            SNA  ++NAL H+CLA      + ++A   ++ +    F+ILFR   S  +KGLYG+ P     R L G GP  +   ++  +FKY++G ++F+ +P+   S++ DA  I+
Sbjct:   43 SNARLIKNALCHICLAGDANIISKKKALNEVESSNAGHFMILFRDSLSLTFKGLYGYSPKHQYER-LFGIGPKIIKESMLEQLFKYNSGTKSFQSVPSHTFSLSVDAFTIQ 152
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BLAST of mRNA_M-pyrifera_M_contig79928.18748.1 vs. uniprot
Match: A0A6F9D8W3_9ASCI (Calmodulin-regulated spectrin-associated protein 1 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9D8W3_9ASCI)

HSP 1 Score: 73.9 bits (180), Expect = 3.720e-12
Identity = 38/112 (33.93%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:  172 SNALRVRNALKHVCLAAPRASDTLREAEL-AMQDTIWPSFLILFRSPESKLYKGLYGFDPVTNLARKLHGNGPTALSTDLVRAVFKYSTGARAFEKLPTTALSIATDAVAIK 504
            SN   + NAL H CL   + ++T+R+  L A+ ++     +ILFR  + + Y+ +Y ++P     RK+ GNGP ++   ++ A+FKY++G R F  +P+  L+++ DA+ IK
Sbjct: 1199 SNRALINNALNHCCLPG-KVNETVRKKTLRALDESSARHLMILFRDNKCQ-YRAIYSYNPDEEKLRKITGNGPVSIIPSMIEALFKYNSGRRTFNCVPSKTLAVSIDAITIK 1308
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BLAST of mRNA_M-pyrifera_M_contig79928.18748.1 vs. uniprot
Match: A0A6G0UUG1_9BILA (Uncharacterized protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UUG1_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 3.590e-8
Identity = 36/123 (29.27%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:  136 PTLGGAGTSRNASNALRVRNALKHVCLAAPRASDTLREAELAMQDTIWPSFLILFRSPESKLYKGLYGFDPVTNLARKLHGNGPTALSTDLVRAVFKYSTGARAFEKLPTTALSIATDAVAIK 504
            PTL         SN   + N+L++       ++D   + + A+  +    FLILFR  + + Y+GLY +D  ++ A ++HG GP  +  +++  +FKY +G++ F K+P+  LS   D   I+
Sbjct:  907 PTLKLFAKHTPKSNRGLIMNSLQYSIFPGAVSNDQRNKVQEALAQSDSKHFLILFRDQKCQ-YRGLYTWDGQSDAAHRIHGMGPKVVKEEMMSMMFKYDSGSKHFNKIPSKHLSPTIDGFTIQ 1028
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BLAST of mRNA_M-pyrifera_M_contig79928.18748.1 vs. uniprot
Match: A0A811LSN7_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811LSN7_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 1.230e-7
Identity = 33/123 (26.83%), Postives = 63/123 (51.22%), Query Frame = 1 
Query:  136 PTLGGAGTSRNASNALRVRNALKHVCLAAPRASDTLREAELAMQDTIWPSFLILFRSPESKLYKGLYGFDPVTNLARKLHGNGPTALSTDLVRAVFKYSTGARAFEKLPTTALSIATDAVAIK 504
            PTL     ++  SN   + NAL++       ++D   + + A+  +    FL+LFR  + + Y+GLY ++   +   ++ G GP     +++  +FKY +G++ F  +PT +LS   D   I+
Sbjct:  976 PTLKLYAKTQPKSNRSLIMNALQYSVFPGAVSNDQRNKVQAALAQSDSKHFLVLFRDHKCQ-YRGLYTWNQQDDTVHRIEGTGPKVCKAEMMNMMFKYDSGSKHFNHIPTKSLSATIDGFTIQ 1097
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BLAST of mRNA_M-pyrifera_M_contig79928.18748.1 vs. uniprot
Match: A0A1I7SL78_BURXY ((pine wood nematode) hypothetical protein n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7SL78_BURXY)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-7
Identity = 34/123 (27.64%), Postives = 63/123 (51.22%), Query Frame = 1 
Query:  136 PTLGGAGTSRNASNALRVRNALKHVCLAAPRASDTLREAELAMQDTIWPSFLILFRSPESKLYKGLYGFDPVTNLARKLHGNGPTALSTDLVRAVFKYSTGARAFEKLPTTALSIATDAVAIK 504
            PTL     ++  SN   + NAL++       ++D   + + A+  +    FL+LFR  + + Y+GLY ++   +   ++ G GP     +++  +FKY +GA+ F  +PT +LS   D   I+
Sbjct:  999 PTLKLYAKAQPKSNRSLIMNALQYSVFPGAVSNDQRNKVQAALAQSDSKHFLVLFRDHKCQ-YRGLYTWNQQDDTVHRIEGMGPKICKEEMMHMMFKYDSGAKHFNHIPTKSLSATIDGFTIQ 1120
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BLAST of mRNA_M-pyrifera_M_contig79928.18748.1 vs. uniprot
Match: H3FJT7_PRIPA (Ptrn-1 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=H3FJT7_PRIPA)

HSP 1 Score: 58.9 bits (141), Expect = 5.670e-7
Identity = 47/162 (29.01%), Postives = 70/162 (43.21%), Query Frame = 1 
Query:  100 PRSPSSRLVEPPPTLGGAGTSRNASNALRV------RNALKHVCLAAPRASDTLREAELAMQDTIWPS---------------------FLILFRSPESKLYKGLYGFDPVTNLARKLHGNGPTALSTDLVRAVFKYSTGARAFEKLPTTALSIATDAVAIK 504
            PR PSS +     TLG A    N   A R+        ALK    A P A         A+Q +++P                       L+LFR  + + Y+GLY +D V++   ++ G GP  +S  +++ +FKY +G + F  +PT  LS   D   IK
Sbjct:  966 PRLPSSGVASGSGTLGRARGQSNVDEARRIAVPSCAEPALK--LFAKPVAKSNRNLITNALQFSVFPGAVSADARNKVLGELAKSGAKHVLLLFRDHKCQ-YRGLYEWDQVSDSVSRIDGKGPKLISEQMMQMMFKYESGGKVFNHIPTKHLSATIDGFTIK 1124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79928.18748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1X7VJI1_AMPQE2.200e-1234.23CKK domain-containing protein n=1 Tax=Amphimedon q... [more]
A0A6F9D8W3_9ASCI3.720e-1233.93Calmodulin-regulated spectrin-associated protein 1... [more]
A0A6G0UUG1_9BILA3.590e-829.27Uncharacterized protein n=1 Tax=Halicephalobus sp.... [more]
A0A811LSN7_9BILA1.230e-726.83Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
A0A1I7SL78_BURXY1.670e-727.64(pine wood nematode) hypothetical protein n=1 Tax=... [more]
H3FJT7_PRIPA5.670e-729.01Ptrn-1 n=2 Tax=Pristionchus pacificus TaxID=54126 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79928contigM-pyrifera_M_contig79928:294..815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score80.9
Seed ortholog evalue6.6e-13
Seed eggNOG ortholog109760.SPPG_01254T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Microtubule-binding calmodulin-regulated spectrin-associated
EggNOG OGs38E9C@33154,3PG47@4751,KOG3654@1,KOG3654@2759
COG Functional cat.Z
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size522
Cds size522
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.0475714-CDS-M-pyrifera_M_contig79928:293..8151622816703.0475714-CDS-M-pyrifera_M_contig79928:293..815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79928 294..815 -
1692278129.1125503-CDS-M-pyrifera_M_contig79928:293..8151692278129.1125503-CDS-M-pyrifera_M_contig79928:293..815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79928 294..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79928.18748.1prot_M-pyrifera_M_contig79928.18748.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79928 294..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79928.18748.1

>prot_M-pyrifera_M_contig79928.18748.1 ID=prot_M-pyrifera_M_contig79928.18748.1|Name=mRNA_M-pyrifera_M_contig79928.18748.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
NRKEEEAKERREKRREKEEALRRRRELLLHHSRPRSPSSRLVEPPPTLGG
AGTSRNASNALRVRNALKHVCLAAPRASDTLREAELAMQDTIWPSFLILF
RSPESKLYKGLYGFDPVTNLARKLHGNGPTALSTDLVRAVFKYSTGARAF
EKLPTTALSIATDAVAIKPPHKK*
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mRNA from alignment at M-pyrifera_M_contig79928:294..815-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79928.18748.1 ID=mRNA_M-pyrifera_M_contig79928.18748.1|Name=mRNA_M-pyrifera_M_contig79928.18748.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig79928:294..815- (Macrocystis pyrifera P11B4 male)
AACCGCAAGGAAGAGGAGGCGAAGGAGCGTCGCGAGAAGCGTCGAGAGAA
GGAGGAGGCGCTGCGGCGTCGAAGGGAGCTGCTCTTGCACCATTCGCGAC
CTCGTTCGCCTTCGTCCCGGCTGGTGGAGCCTCCACCTACGCTGGGAGGT
GCAGGGACATCGAGAAACGCTTCGAATGCGCTTCGAGTCAGAAATGCTCT
CAAGCACGTTTGTCTGGCTGCGCCACGAGCCTCTGACACGCTCCGTGAGG
CAGAATTGGCCATGCAGGACACCATCTGGCCCTCCTTCCTCATCCTCTTC
CGCTCCCCAGAATCGAAACTCTACAAGGGCCTCTACGGCTTCGACCCAGT
CACGAACCTCGCAAGGAAACTCCACGGAAACGGCCCCACCGCCCTCTCCA
CGGATCTCGTCAGAGCCGTCTTCAAGTACTCCACCGGAGCCAGGGCCTTT
GAGAAACTCCCCACCACCGCGCTCTCCATCGCTACCGACGCAGTCGCAAT
CAAACCACCACACAAGAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79928:294..815-

>mRNA_M-pyrifera_M_contig79928.18748.1 ID=mRNA_M-pyrifera_M_contig79928.18748.1|Name=mRNA_M-pyrifera_M_contig79928.18748.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig79928:294..815- (Macrocystis pyrifera P11B4 male)
AACCGCAAGGAAGAGGAGGCGAAGGAGCGTCGCGAGAAGCGTCGAGAGAA
GGAGGAGGCGCTGCGGCGTCGAAGGGAGCTGCTCTTGCACCATTCGCGAC
CTCGTTCGCCTTCGTCCCGGCTGGTGGAGCCTCCACCTACGCTGGGAGGT
GCAGGGACATCGAGAAACGCTTCGAATGCGCTTCGAGTCAGAAATGCTCT
CAAGCACGTTTGTCTGGCTGCGCCACGAGCCTCTGACACGCTCCGTGAGG
CAGAATTGGCCATGCAGGACACCATCTGGCCCTCCTTCCTCATCCTCTTC
CGCTCCCCAGAATCGAAACTCTACAAGGGCCTCTACGGCTTCGACCCAGT
CACGAACCTCGCAAGGAAACTCCACGGAAACGGCCCCACCGCCCTCTCCA
CGGATCTCGTCAGAGCCGTCTTCAAGTACTCCACCGGAGCCAGGGCCTTT
GAGAAACTCCCCACCACCGCGCTCTCCATCGCTACCGACGCAGTCGCAAT
CAAACCACCACACAAGAAGTAGAACCGCAAGGAAGAGGAGGCGAAGGAGC
GTCGCGAGAAGCGTCGAGAGAAGGAGGAGGCGCTGCGGCGTCGAAGGGAG
CTGCTCTTGCACCATTCGCGACCTCGTTCGCCTTCGTCCCGGCTGGTGGA
GCCTCCACCTACGCTGGGAGGTGCAGGGACATCGAGAAACGCTTCGAATG
CGCTTCGAGTCAGAAATGCTCTCAAGCACGTTTGTCTGGCTGCGCCACGA
GCCTCTGACACGCTCCGTGAGGCAGAATTGGCCATGCAGGACACCATCTG
GCCCTCCTTCCTCATCCTCTTCCGCTCCCCAGAATCGAAACTCTACAAGG
GCCTCTACGGCTTCGACCCAGTCACGAACCTCGCAAGGAAACTCCACGGA
AACGGCCCCACCGCCCTCTCCACGGATCTCGTCAGAGCCGTCTTCAAGTA
CTCCACCGGAGCCAGGGCCTTTGAGAAACTCCCCACCACCGCGCTCTCCA
TCGCTACCGACGCAGTCGCAATCAAACCACCACACAAGAAGTAG
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