mRNA_M-pyrifera_M_contig7988.18742.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7988.18742.1
Unique NamemRNA_M-pyrifera_M_contig7988.18742.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: D7FLH8_ECTSI (FAM184 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.730e-14
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    7 GSSSVGSAEATNATTTTGGGSMKPGEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 177
            GSS   SA       T+GG  MK  +VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ
Sbjct:   50 GSSGPPSATTVAEAATSGGTPMKAADVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 106
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: A0A6H5KR93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR93_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.040e-14
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   52 TTGGGSMKPGEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 177
            T+GG  MK  +VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ
Sbjct:   32 TSGGTPMKAADVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 73
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: A0A7S3UP41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UP41_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-12
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   70 MKPGEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 177
            MK  EVFPDLHHKMSKKIAQLTKVIYHLNTKNED Q
Sbjct:   11 MKASEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDHQ 46
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: A0A482SQX4_9ARCH (FAM184 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQX4_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 3.270e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   73 KPGEVFPDLHHKMSKKIAQLTKVIYHLNTKNED 171
            K  EVFPDLHHKMSKKIAQLTKVIYHLNTKNED
Sbjct:    9 KTMEVFPDLHHKMSKKIAQLTKVIYHLNTKNED 41
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: A0A835ZEA9_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.500e-12
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:   79 GEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 177
            G+VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ
Sbjct:   13 GDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 45
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: A0A7R9UEV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEV8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.380e-11
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:   85 VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQA 180
            VFPD+HHKMSKKIAQLTKVIYHLNTKNED +A
Sbjct:   10 VFPDVHHKMSKKIAQLTKVIYHLNTKNEDHEA 41
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: A0A7S1XST5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XST5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.020e-10
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:   85 VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQA 180
            +FPD+HHKMSKKIAQLTKVIYHLNTKNED +A
Sbjct:   23 MFPDIHHKMSKKIAQLTKVIYHLNTKNEDHEA 54
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: A0A7S0HLU0_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLU0_9CRYP)

HSP 1 Score: 60.1 bits (144), Expect = 4.590e-9
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:   85 VFPDLHHKMSKKIAQLTKVIYHLNTKNED 171
            +FPDLHHKMSKKIAQLTKVIYHLN+KNED
Sbjct:   54 LFPDLHHKMSKKIAQLTKVIYHLNSKNED 82
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: L1IJW8_GUITC (FAM184 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IJW8_GUITC)

HSP 1 Score: 60.1 bits (144), Expect = 4.630e-9
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:   85 VFPDLHHKMSKKIAQLTKVIYHLNTKNED 171
            +FPDLHHKMSKKIAQLTKVIYHLN+KNED
Sbjct:    7 LFPDLHHKMSKKIAQLTKVIYHLNSKNED 35
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BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Match: UPI001CFF2F7B (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF2F7B)

HSP 1 Score: 58.5 bits (140), Expect = 6.280e-9
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   88 FPDLHHKMSKKIAQLTKVIYHLNTKNED 171
            FPD HHKMSKKIAQLTKVIYHLNTKN+D
Sbjct:   23 FPDFHHKMSKKIAQLTKVIYHLNTKNDD 50
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7988.18742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLH8_ECTSI1.730e-1471.93FAM184 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KR93_9PHAE6.040e-1485.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UP41_HETAK1.500e-1291.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SQX4_9ARCH3.270e-1293.94FAM184 domain-containing protein n=1 Tax=archaeon ... [more]
A0A835ZEA9_9STRA3.500e-1296.97B30.2/SPRY domain-containing protein n=1 Tax=Tribo... [more]
A0A7R9UEV8_9STRA3.380e-1190.63Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1XST5_9STRA7.020e-1087.50Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0HLU0_9CRYP4.590e-993.10Hypothetical protein (Fragment) n=2 Tax=Hanusia ph... [more]
L1IJW8_GUITC4.630e-993.10FAM184 domain-containing protein n=1 Tax=Guillardi... [more]
UPI001CFF2F7B6.280e-992.86uncharacterized protein n=1 Tax=Naegleria lovanien... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7988contigM-pyrifera_M_contig7988:11462..11641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.3e-12
Seed eggNOG ortholog2880.D7FLH8
Preferred nameFAM184A
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Family with sequence similarity 184, A and B
EggNOG OGs28YSA@1,2R5KC@2759
Ec32 ortholog descriptionFAM184 family
Ec32 orthologEc-17_001130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.7334886-CDS-M-pyrifera_M_contig7988:11461..116411622816702.7334886-CDS-M-pyrifera_M_contig7988:11461..11641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7988 11462..11641 +
1692278128.9569063-CDS-M-pyrifera_M_contig7988:11461..116411692278128.9569063-CDS-M-pyrifera_M_contig7988:11461..11641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7988 11462..11641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7988.18742.1prot_M-pyrifera_M_contig7988.18742.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7988 11462..11641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7988.18742.1

>prot_M-pyrifera_M_contig7988.18742.1 ID=prot_M-pyrifera_M_contig7988.18742.1|Name=mRNA_M-pyrifera_M_contig7988.18742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
PAGSSSVGSAEATNATTTTGGGSMKPGEVFPDLHHKMSKKIAQLTKVIYH
LNTKNEDRQA
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mRNA from alignment at M-pyrifera_M_contig7988:11462..11641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7988.18742.1 ID=mRNA_M-pyrifera_M_contig7988.18742.1|Name=mRNA_M-pyrifera_M_contig7988.18742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig7988:11462..11641+ (Macrocystis pyrifera P11B4 male)
CCCGCAGGTTCGTCGTCGGTAGGGTCTGCGGAGGCGACGAATGCAACGAC
GACGACGGGGGGTGGAAGCATGAAGCCCGGCGAGGTGTTCCCGGACCTGC
ACCACAAGATGAGCAAGAAAATCGCCCAGTTGACGAAGGTTATCTACCAC
CTCAACACGAAGAACGAAGACCGACAGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7988:11462..11641+

>mRNA_M-pyrifera_M_contig7988.18742.1 ID=mRNA_M-pyrifera_M_contig7988.18742.1|Name=mRNA_M-pyrifera_M_contig7988.18742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig7988:11462..11641+ (Macrocystis pyrifera P11B4 male)
CCCGCAGGTTCGTCGTCGGTAGGGTCTGCGGAGGCGACGAATGCAACGAC
GACGACGGGGGGTGGAAGCATGAAGCCCGGCGAGGTGTTCCCGGACCTGC
ACCACAAGATGAGCAAGAAAATCGCCCAGTTGACGAAGGTTATCTACCAC
CTCAACACGAAGAACGAAGACCGACAGGCACCCGCAGGTTCGTCGTCGGT
AGGGTCTGCGGAGGCGACGAATGCAACGACGACGACGGGGGGTGGAAGCA
TGAAGCCCGGCGAGGTGTTCCCGGACCTGCACCACAAGATGAGCAAGAAA
ATCGCCCAGTTGACGAAGGTTATCTACCACCTCAACACGAAGAACGAAGA
CCGACAGGCA
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