mRNA_M-pyrifera_M_contig79871.18736.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79871.18736.1
Unique NamemRNA_M-pyrifera_M_contig79871.18736.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A267EVC6_9PLAT (Tubulin domain-containing protein (Fragment) n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EVC6_9PLAT)

HSP 1 Score: 139 bits (350), Expect = 1.170e-40
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRY--GTCLGLVVLEPWTPCALAHSDSFSAPTTLC 267
            MRE+   Q GQCGNQIG+KFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEA+GG+Y  G C       PWTPC LAHSDS S  T  C
Sbjct:    1 MREM---QTGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVRGRCSSTWSPAPWTPCGLAHSDSCSGRTISC 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A7S3JLK0_9SPIT (Tubulin beta chain (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JLK0_9SPIT)

HSP 1 Score: 136 bits (342), Expect = 7.090e-40
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MREIVH+QGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRY     L+ LEP T
Sbjct:    4 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGT 75
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A3Q4GW69_NEOBR (Tubulin domain-containing protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4GW69_NEOBR)

HSP 1 Score: 134 bits (336), Expect = 4.450e-39
Identity = 62/80 (77.50%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWTPCALAHSD 240
            MREIVH+Q GQCGNQIGAKFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEATGG+Y     LV LEP T  ++   D
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGD 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A4Y2DRH2_ARAVE (Tubulin beta chain n=2 Tax=Protostomia TaxID=33317 RepID=A0A4Y2DRH2_ARAVE)

HSP 1 Score: 134 bits (336), Expect = 4.580e-39
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MREIVHIQ GQCGNQIGAKFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEATGG+Y     LV LEP T
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGT 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A078B8F6_STYLE (Tubulin beta chain n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B8F6_STYLE)

HSP 1 Score: 136 bits (342), Expect = 5.010e-39
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MREIVHIQGGQCGNQIGAKFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEATGGRY     L+ LEP T
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGT 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A8J4XGU6_CLAMG (TUBB4A isoform 10 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4XGU6_CLAMG)

HSP 1 Score: 133 bits (334), Expect = 8.210e-39
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MREIVH+Q GQCGNQIGAKFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEATGG+Y     LV LEP T
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGT 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A7S2QKP5_9DINO (Tubulin beta chain (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QKP5_9DINO)

HSP 1 Score: 135 bits (339), Expect = 8.660e-39
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MRE+VHIQGGQCGNQIGAKFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEATGGRY     L+ LEP T
Sbjct:   35 MRELVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGT 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A183B1Q9_9TREM (Tubulin domain-containing protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183B1Q9_9TREM)

HSP 1 Score: 132 bits (333), Expect = 8.950e-39
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MREIVH+Q GQCGNQIGAKFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEATGG+Y     LV LEP T
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGT 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A4W4G4Y8_ELEEL (Tubulin beta 4B class IVb n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A4W4G4Y8_ELEEL)

HSP 1 Score: 133 bits (334), Expect = 8.980e-39
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MREIVH+Q GQCGNQIGAKFWEVISDEHG+DPTGTYHGDSDLQLERINVYYNEATGG+Y     LV LEP T
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGT 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Match: A0A6A0AFT1_HAELA (TUB3 protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A6A0AFT1_HAELA)

HSP 1 Score: 134 bits (337), Expect = 9.280e-39
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYGTCLGLVVLEPWT 216
            MREIVHIQGGQCGNQIGAKFWEV+SDEHGVDPTGTYHGDSDLQLERINVY+NEATGGRY     L+ LEP T
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGT 72
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79871.18736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A267EVC6_9PLAT1.170e-4072.53Tubulin domain-containing protein (Fragment) n=1 T... [more]
A0A7S3JLK0_9SPIT7.090e-4087.50Tubulin beta chain (Fragment) n=1 Tax=Euplotes har... [more]
A0A3Q4GW69_NEOBR4.450e-3977.50Tubulin domain-containing protein n=1 Tax=Neolampr... [more]
A0A4Y2DRH2_ARAVE4.580e-3986.11Tubulin beta chain n=2 Tax=Protostomia TaxID=33317... [more]
A0A078B8F6_STYLE5.010e-3987.50Tubulin beta chain n=1 Tax=Stylonychia lemnae TaxI... [more]
A0A8J4XGU6_CLAMG8.210e-3984.72TUBB4A isoform 10 n=1 Tax=Clarias magur TaxID=1594... [more]
A0A7S2QKP5_9DINO8.660e-3986.11Tubulin beta chain (Fragment) n=1 Tax=Brandtodiniu... [more]
A0A183B1Q9_9TREM8.950e-3984.72Tubulin domain-containing protein n=1 Tax=Echinost... [more]
A0A4W4G4Y8_ELEEL8.980e-3984.72Tubulin beta 4B class IVb n=2 Tax=Clupeocephala Ta... [more]
A0A6A0AFT1_HAELA9.280e-3986.11TUB3 protein (Fragment) n=2 Tax=Eukaryota TaxID=27... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79871contigM-pyrifera_M_contig79871:438..958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue8.8e-30
Seed eggNOG ortholog55529.EKX38351
KEGG koko:K07375
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.structural constituent of cytoskeleton
EggNOG OGsCOG5023@1,KOG1375@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Exons3
Model size267
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79871.18736.1prot_M-pyrifera_M_contig79871.18736.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79871 438..958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.4881232-CDS-M-pyrifera_M_contig79871:437..5031622816702.4881232-CDS-M-pyrifera_M_contig79871:437..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79871 438..503 +
1692278128.816756-CDS-M-pyrifera_M_contig79871:437..5031692278128.816756-CDS-M-pyrifera_M_contig79871:437..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79871 438..503 +
1622816702.5004368-CDS-M-pyrifera_M_contig79871:664..7981622816702.5004368-CDS-M-pyrifera_M_contig79871:664..798Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79871 665..798 +
1692278128.8313212-CDS-M-pyrifera_M_contig79871:664..7981692278128.8313212-CDS-M-pyrifera_M_contig79871:664..798Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79871 665..798 +
1622816702.5111332-CDS-M-pyrifera_M_contig79871:891..9581622816702.5111332-CDS-M-pyrifera_M_contig79871:891..958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79871 892..958 +
1692278128.8419287-CDS-M-pyrifera_M_contig79871:891..9581692278128.8419287-CDS-M-pyrifera_M_contig79871:891..958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79871 892..958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79871.18736.1

>prot_M-pyrifera_M_contig79871.18736.1 ID=prot_M-pyrifera_M_contig79871.18736.1|Name=mRNA_M-pyrifera_M_contig79871.18736.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVY
YNEATGGRYGTCLGLVVLEPWTPCALAHSDSFSAPTTLC
back to top

mRNA from alignment at M-pyrifera_M_contig79871:438..958+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79871.18736.1 ID=mRNA_M-pyrifera_M_contig79871.18736.1|Name=mRNA_M-pyrifera_M_contig79871.18736.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=521bp|location=Sequence derived from alignment at M-pyrifera_M_contig79871:438..958+ (Macrocystis pyrifera P11B4 male)
ATGCGTGAGATCGTGCACATTCAGGGTGGCCAGTGCGGGAACCAGATTGG
AGCCAAGTTCTGGGAGGTACGTGTTTTGGTGTGTTGGGGTGCTGGGGTTG
CGTGAGAGGGTGATTTTGTTGGGAGGCAACGGTTGGTTTGGGTTGGTTTG
GCGGGCAAATTTGCGTTTTTCTGGCGTTTGCGGGGGGTTGTGTGGGTGGA
TGTGGCTGTTTTCTTGGTGTGTGACAGGTGATCTCCGACGAACACGGTGT
GGACCCAACTGGAACGTACCATGGGGACTCCGATTTGCAATTGGAGCGCA
TCAACGTGTATTACAACGAGGCAACTGGCGGCCGCTACGGTACGTGTTTG
GGCTTGGTTGTGTGATGCTGGGATGGTGGGTGTTGTGGGGAAGGGTTTGG
ATGCGGTGTGCTTTCTTCTATGCAGTCCCACGCGCCGTCCTCATGGACCT
TGAGCCTGGAACCATGGACTCCGTGCGCGCTGGCCCATTCGGACAGCTTT
TCCGCCCCGACTACTTTGTGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig79871:438..958+

>mRNA_M-pyrifera_M_contig79871.18736.1 ID=mRNA_M-pyrifera_M_contig79871.18736.1|Name=mRNA_M-pyrifera_M_contig79871.18736.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig79871:438..958+ (Macrocystis pyrifera P11B4 male)
ATGCGTGAGATCGTGCACATTCAGGGTGGCCAGTGCGGGAACCAGATTGG
AGCCAAGTTCTGGGAGATGCGTGAGATCGTGCACATTCAGGGTGGCCAGT
GCGGGAACCAGATTGGAGCCAAGTTCTGGGAGGTGATCTCCGACGAACAC
GGTGTGGACCCAACTGGAACGTACCATGGGGACTCCGATTTGCAATTGGA
GCGCATCAACGTGTATTACAACGAGGCAACTGGCGGCCGCTACGGTACGT
GTTTGGGCTTGGTTGTGTGATCTCCGACGAACACGGTGTGGACCCAACTG
GAACGTACCATGGGGACTCCGATTTGCAATTGGAGCGCATCAACGTGTAT
TACAACGAGGCAACTGGCGGCCGCTACGGTACGTGTTTGGGCTTGGTTGT
CCTGGAACCATGGACTCCGTGCGCGCTGGCCCATTCGGACAGCTTTTCCG
CCCCGACTACTTTGTGTCCTGGAACCATGGACTCCGTGCGCGCTGGCCCA
TTCGGACAGCTTTTCCGCCCCGACTACTTTGTGT
back to top