mRNA_M-pyrifera_M_contig79818.18724.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79818.18724.1
Unique NamemRNA_M-pyrifera_M_contig79818.18724.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79818.18724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79818contigM-pyrifera_M_contig79818:399..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79818.18724.1prot_M-pyrifera_M_contig79818.18724.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79818 399..779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.7367296-CDS-M-pyrifera_M_contig79818:398..5591622816701.7367296-CDS-M-pyrifera_M_contig79818:398..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79818 399..559 -
1692278128.3665612-CDS-M-pyrifera_M_contig79818:398..5591692278128.3665612-CDS-M-pyrifera_M_contig79818:398..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79818 399..559 -
1622816701.751006-CDS-M-pyrifera_M_contig79818:604..7791622816701.751006-CDS-M-pyrifera_M_contig79818:604..779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79818 605..779 -
1692278128.3761964-CDS-M-pyrifera_M_contig79818:604..7791692278128.3761964-CDS-M-pyrifera_M_contig79818:604..779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79818 605..779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.7674508-UTR-M-pyrifera_M_contig79818:779..8001622816701.7674508-UTR-M-pyrifera_M_contig79818:779..800Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79818 780..800 -
1692278128.388652-UTR-M-pyrifera_M_contig79818:779..8001692278128.388652-UTR-M-pyrifera_M_contig79818:779..800Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79818 780..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79818.18724.1

>prot_M-pyrifera_M_contig79818.18724.1 ID=prot_M-pyrifera_M_contig79818.18724.1|Name=mRNA_M-pyrifera_M_contig79818.18724.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MSSEMEPGSLLSFVTDGLGGAFGEIGDLAAAYDAMSECEILLASVSATAG
FKSRRRHMRSVVRSLLGRSVAVCNRHPTPTSFKPLSRPISLSARRAMALN
HSLLSHSTLTLG
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mRNA from alignment at M-pyrifera_M_contig79818:399..800-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79818.18724.1 ID=mRNA_M-pyrifera_M_contig79818.18724.1|Name=mRNA_M-pyrifera_M_contig79818.18724.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig79818:399..800- (Macrocystis pyrifera P11B4 male)
GTTTCTCCCGATTCCGTGGCCATGAGCAGCGAAATGGAACCTGGATCCCT
GCTCTCGTTCGTCACAGACGGGTTGGGGGGTGCGTTTGGGGAGATTGGGG
ATTTGGCAGCAGCGTACGACGCAATGAGCGAATGCGAAATTCTGCTAGCG
TCCGTTTCGGCCACTGCGGGGTTCAAATCGCGTCGCCGACACATGCGTCA
GGATGCGGCGGCAGCGGAGAGTGAGGGGGGCATGTTTCCAGGGAGTGTAG
TGCGGAGCTTACTGGGGAGATCAGTCGCAGTGTGCAATCGCCACCCAACC
CCAACCTCGTTTAAACCGCTTTCCAGACCGATCTCCTTATCCGCACGCCG
TGCAATGGCGCTCAACCACTCCCTCCTCTCCCACTCCACGCTCACCCTCG
GC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79818:399..800-

>mRNA_M-pyrifera_M_contig79818.18724.1 ID=mRNA_M-pyrifera_M_contig79818.18724.1|Name=mRNA_M-pyrifera_M_contig79818.18724.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig79818:399..800- (Macrocystis pyrifera P11B4 male)
ATGAGCAGCGAAATGGAACCTGGATCCCTGCTCTCGTTCGTCACAGACGG
GTTGGGGGGTGCGTTTGGGGAGATTGGGGATTTGGCAGCAGCGTACGACG
CAATGAGCGAATGCGAAATTCTGCTAGCGTCCGTTTCGGCCACTGCGGGG
TTCAAATCGCGTCGCCGACACATGCATGAGCAGCGAAATGGAACCTGGAT
CCCTGCTCTCGTTCGTCACAGACGGGTTGGGGGGTGCGTTTGGGGAGATT
GGGGATTTGGCAGCAGCGTACGACGCAATGAGCGAATGCGAAATTCTGCT
AGCGTCCGTTTCGGCCACTGCGGGGTTCAAATCGCGTCGCCGACACATGC
GGAGTGTAGTGCGGAGCTTACTGGGGAGATCAGTCGCAGTGTGCAATCGC
CACCCAACCCCAACCTCGTTTAAACCGCTTTCCAGACCGATCTCCTTATC
CGCACGCCGTGCAATGGCGCTCAACCACTCCCTCCTCTCCCACTCCACGC
TCACCCTCGGCGGAGTGTAGTGCGGAGCTTACTGGGGAGATCAGTCGCAG
TGTGCAATCGCCACCCAACCCCAACCTCGTTTAAACCGCTTTCCAGACCG
ATCTCCTTATCCGCACGCCGTGCAATGGCGCTCAACCACTCCCTCCTCTC
CCACTCCACGCTCACCCTCGGC
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