mRNA_M-pyrifera_M_contig79798.18720.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79798.18720.1
Unique NamemRNA_M-pyrifera_M_contig79798.18720.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 9.080e-60
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNALM 333
            +TQRES+SNMGNIQASGYIARYFGSA+GA+GGAVLYN+DTWGWGL+IS LFWIN L+PLVLV+PLMP+L E+KKPRE GV KRH++ELWTLVQK AVWRPMIFVYLYNALM
Sbjct:  248 KTQRESMSNMGNIQASGYIARYFGSAIGAVGGAVLYNKDTWGWGLTISELFWINALVPLVLVMPLMPFLLEDKKPREKGVLKRHSDELWTLVQKTAVWRPMIFVYLYNALM 358          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: A0A835YTY0_9STRA (Folate/biopterin transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.240e-33
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKK---PRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNALMV 336
            RT+ ES  + G +QASGYIAR FGSA+G+  GA++YN+  WGWGLSI+ +  IN ++PL  V P +PYL E  K   P    V++ H +E+W LVQKR VW+PM FVY+YNA+M+
Sbjct:  231 RTKLESTKHRGTVQASGYIARAFGSAVGSTAGALVYNQANWGWGLSIAQIMLINAVVPLACVSPFIPYLKETVKTSLPTARHVWRTHWQEIWALVQKRVVWQPMTFVYIYNAMMI 345          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 106 bits (265), Expect = 1.130e-24
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYE--EKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNALMV 336
            R+Q ES    G IQA GYI R+ GS LG+  GAVLYNRDTWGWGL+   +F +N  +P V++ P M YL +  + KP    +  R   E+W  VQKR +W+PM F++ YN + +
Sbjct:  186 RSQHESDDERGTIQAQGYIIRFVGSILGSAMGAVLYNRDTWGWGLTTPQMFALNAFVPFVVLYPAMAYLRDASDLKPIPVPIQCR---EIWGAVQKRNIWQPMAFIFAYNVMQI 296          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: A0A7S1FNC7_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNC7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.460e-24
Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNAL 330
            R+  ES+ N G +Q+ GYI R+FGS +GA  GAV+YN+D W + L IS +F+IN   P++ +LPL+P+L E +   E   F    ++L+   Q +AVW+PM FVY+YNA+
Sbjct:  419 RSAYESLENRGQMQSKGYIVRFFGSVIGATIGAVVYNKDDWKFYLPISLVFFINAAFPMIFLLPLVPFLMEIETQCEPRNFVTQCKDLFHTAQLKAVWQPMTFVYIYNAM 528          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: A0A1Z5K9Z9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9Z9_FISSO)

HSP 1 Score: 103 bits (258), Expect = 1.370e-23
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNAL 330
            R++ ES    G +Q+ GYI R+FGS +GA  GA++YN+D W W L I  +F+IN   PL+ +LP +PYL E +       F     EL+   Q RAVW+PM FVY+YNAL
Sbjct:  335 RSRYESQEKRGTMQSKGYIVRFFGSTVGATIGALVYNKDDWDWSLPIRLIFFINAAFPLIFLLPFVPYLLELETDCLPKNFWDQCRELFHTAQLRAVWQPMTFVYVYNAL 444          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: W7TKM6_9STRA (Folate biopterin transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKM6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.910e-21
Identity = 44/112 (39.29%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNALMV 336
            R++ E    +G++Q+ GY+ARY G+ +GA  G +LYN   W WGLSIS+++ +NGL  +VLVLP   +L +  +  E    K    ++W +VQ+R ++ PM F+ +YN L++
Sbjct:  257 RSKLEPEGRVGHMQSVGYVARYVGNVVGATLGTILYNEKEWHWGLSISSIYLLNGLAAVVLVLPFTYHLSDPNQVLEARSLKEQLGDIWKMVQRRTIYVPMSFIAVYNMLLI 368          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: A0A7S2XY88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY88_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.950e-21
Identity = 45/112 (40.18%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNALMV 336
            R + E   + G  QA+ Y  R+ GS  G +GG +LYN   WGWGL+   +  +NG++PLV++LPL+  L+E +  +   V  +  +++W  +++RAVW+PM F+YLYN L V
Sbjct:  174 RGRTEEEGSKGQAQATCYAVRFGGSVAGCLGGTLLYNSTNWGWGLTFPQVCLVNGVLPLVVLLPLLIPLWERQGSQGKSV-PQQCKDVWGTIEQRAVWQPMAFIYLYNLLQV 284          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: D7FZP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.690e-21
Identity = 42/108 (38.89%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYN 324
            R + E+  + G +QA+ Y  R+ G+ +G +GGA+L+NR  WGWGL+   +  I  ++P++++ P + YL+EE+     GV K    ++W  +Q +AVWRPM FVY++N
Sbjct:  215 RARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNRGAWGWGLTFRQVCLIMSMMPVLVLGPAVVYLWEERSKETKGV-KNQVRDIWDTIQLQAVWRPMAFVYIFN 321          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: A0A7S1TWA3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWA3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.740e-19
Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGV--FKRHTEELWTLVQKRAVWRPMIFVYLYNALMV 336
            R++ E     G +QA+ Y  R+FGS LGA  G ++YN+D WGWGLS + + ++ G+ PL+ V+P   Y+  EK   E G         ++W  V   AVW PM FVY+YN + +
Sbjct:  265 RSRYEPSEGRGQMQATCYALRFFGSVLGAGTGTLVYNKDAWGWGLSFAQVCFVLGVFPLLFVVP-FAYMVWEKPLSEAGAKSVPEQCRDIWNTVTLDAVWMPMTFVYIYNVMQI 377          
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Match: A0A1V9YZE5_9STRA (Folate-Biopterin Transporter (FBT) family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZE5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.030e-17
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 RTQRESVSNMGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPLVLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNAL 330
            R   E VS  G +Q++ Y+ R+    +G   G++L NRDTWGWGLS+S  F I  ++PL+L +P + Y  +E        F+     +W ++Q RA W+P+ F+  YN L
Sbjct:  157 RAMNEPVSQRGQVQSAIYMIRFLTEMVGYWLGSILSNRDTWGWGLSMSQCFAILAILPLILAIPFI-YCLDEPVVTHVQPFQEQLLTIWKMLQLRATWQPLAFLIFYNTL 265          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79798.18720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LI15_ECTSI9.080e-6083.78Folate/biopterin transporter n=2 Tax=Ectocarpus Ta... [more]
A0A835YTY0_9STRA6.240e-3353.04Folate/biopterin transporter n=2 Tax=Tribonema min... [more]
A0A6V1WMI5_HETAK1.130e-2446.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1FNC7_9STRA5.460e-2445.45Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A1Z5K9Z9_FISSO1.370e-2346.36Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
W7TKM6_9STRA4.910e-2139.29Folate biopterin transporter n=2 Tax=Monodopsidace... [more]
A0A7S2XY88_9STRA7.950e-2140.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FZP1_ECTSI8.690e-2138.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TWA3_9STRA9.740e-1939.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9YZE5_9STRA8.030e-1737.27Folate-Biopterin Transporter (FBT) family n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79798contigM-pyrifera_M_contig79798:142..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue1.9e-44
Seed eggNOG ortholog2880.D8LI15
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
Ec32 ortholog descriptionfolate/biopterin transporter
Ec32 orthologEc-04_002850.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.3623507-CDS-M-pyrifera_M_contig79798:141..4501622816701.3623507-CDS-M-pyrifera_M_contig79798:141..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79798 142..450 -
1692278128.0748808-CDS-M-pyrifera_M_contig79798:141..4501692278128.0748808-CDS-M-pyrifera_M_contig79798:141..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79798 142..450 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.3738174-UTR-M-pyrifera_M_contig79798:450..4771622816701.3738174-UTR-M-pyrifera_M_contig79798:450..477Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79798 451..477 -
1692278128.0925756-UTR-M-pyrifera_M_contig79798:450..4771692278128.0925756-UTR-M-pyrifera_M_contig79798:450..477Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79798 451..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79798.18720.1prot_M-pyrifera_M_contig79798.18720.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79798 142..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79798.18720.1

>prot_M-pyrifera_M_contig79798.18720.1 ID=prot_M-pyrifera_M_contig79798.18720.1|Name=mRNA_M-pyrifera_M_contig79798.18720.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MGNIQASGYIARYFGSALGAIGGAVLYNRDTWGWGLSISTLFWINGLIPL
VLVLPLMPYLYEEKKPRETGVFKRHTEELWTLVQKRAVWRPMIFVYLYNA
LMV
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mRNA from alignment at M-pyrifera_M_contig79798:142..477-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79798.18720.1 ID=mRNA_M-pyrifera_M_contig79798.18720.1|Name=mRNA_M-pyrifera_M_contig79798.18720.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig79798:142..477- (Macrocystis pyrifera P11B4 male)
AGGACCCAGAGGGAATCGGTATCGAACATGGGGAATATACAGGCTAGTGG TTACATCGCGCGATATTTCGGGTCTGCGCTTGGAGCCATTGGCGGGGCAG TCCTGTACAACCGAGACACGTGGGGGTGGGGGCTGTCCATCTCAACGCTC TTCTGGATCAACGGTCTCATCCCGCTGGTGCTGGTGCTCCCGCTGATGCC TTACCTCTACGAGGAGAAGAAGCCGAGGGAGACCGGGGTGTTCAAGAGGC ACACGGAGGAACTGTGGACGCTCGTGCAGAAGAGGGCGGTGTGGAGGCCG ATGATATTTGTGTACCTGTACAATGCGCTCATGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79798:142..477-

>mRNA_M-pyrifera_M_contig79798.18720.1 ID=mRNA_M-pyrifera_M_contig79798.18720.1|Name=mRNA_M-pyrifera_M_contig79798.18720.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig79798:142..477- (Macrocystis pyrifera P11B4 male)
ATGGGGAATATACAGGCTAGTGGTTACATCGCGCGATATTTCGGGTCTGC
GCTTGGAGCCATTGGCGGGGCAGTCCTGTACAACCGAGACACGTGGGGGT
GGGGGCTGTCCATCTCAACGCTCTTCTGGATCAACGGTCTCATCCCGCTG
GTGCTGGTGCTCCCGCTGATGCCTTACCTCTACGAGGAGAAGAAGCCGAG
GGAGACCGGGGTGTTCAAGAGGCACACGGAGGAACTGTGGACGCTCGTGC
AGAAGAGGGCGGTGTGGAGGCCGATGATATTTGTGTACCTGTACAATGCG
CTCATGGTGATGGGGAATATACAGGCTAGTGGTTACATCGCGCGATATTT
CGGGTCTGCGCTTGGAGCCATTGGCGGGGCAGTCCTGTACAACCGAGACA
CGTGGGGGTGGGGGCTGTCCATCTCAACGCTCTTCTGGATCAACGGTCTC
ATCCCGCTGGTGCTGGTGCTCCCGCTGATGCCTTACCTCTACGAGGAGAA
GAAGCCGAGGGAGACCGGGGTGTTCAAGAGGCACACGGAGGAACTGTGGA
CGCTCGTGCAGAAGAGGGCGGTGTGGAGGCCGATGATATTTGTGTACCTG
TACAATGCGCTCATGGTG
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