mRNA_M-pyrifera_M_contig7978.18719.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7978.18719.1
Unique NamemRNA_M-pyrifera_M_contig7978.18719.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: A0A6H5KWS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 4.200e-115
Identity = 211/327 (64.53%), Postives = 231/327 (70.64%), Query Frame = 1
Query:    1 GAVQMSPGFHALAAAAVGDGLAMGTSGGXXXXXXXXXSRMLSPTSGAAAVAATAEAMGAVKGMKLLQYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGAPEEDSGAPPNRD--------------RGRGASGSPPPRFIG-LERCDSDVSLASVASVVSVANTA---CGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRFLTSDSLHPLAQV 927
            G +Q+SPG+ ALAAAA       G  GG         SR LSP SGA A A   EA    KGMK+LQ+F+AH GAVWCAEFSRKGQYLATGGADGLVKIW IG  E+ S    + D                     S   RF G LER DSDVSLAS               GST DCQ   PP+  GELVIGGRASRVMRGH+GDVVDLSWS NAFLLSAGRDGSLRLWHP RLGCVHLFPQTG+ATPTSC+F+PRLENSFAT GEDGK+RVWKITSAKVEAEVQ+P R THVRFSPDG+ LAAGM+GGQVRF+TS+SL P+AQV
Sbjct:  965 GELQLSPGYQALAAAA------NGRPGGGGSGFVSPTSRGLSPESGAVAEAEAVEAXXXXKGMKMLQHFKAHVGAVWCAEFSRKGQYLATGGADGLVKIWDIGVEEDGSRELDSSDGXXXXXXXXXXXXXXXXXXXXSAGARFTGRLERSDSDVSLASXXXXXXXXXXXXXXAGSTSDCQDPVPPLRRGELVIGGRASRVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVRVWKITSAKVEAEVQLPNRATHVRFSPDGKALAAGMVGGQVRFMTSESLQPMAQV 1285          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: D8LMN8_ECTSI (WD repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 4.380e-115
Identity = 212/337 (62.91%), Postives = 237/337 (70.33%), Query Frame = 1
Query:    1 GAVQMSPGFHALAAAAVGDGLAMGTSGGXXXXXXXXXSRMLSPTSGAAAVAATAEAMGAVKGMKLLQYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGAPEEDSGAPPNRDRGRGA----------------SGSPPPRFIG-LERCDSDVSLASVASVVSVAN---TACGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRFLTSDSLHPLAQVR-SGGRGR 948
            G +Q+SPG+ ALAAAA       G  GG         SR LSP SGA A A   E      GMK+LQ+F+AH GAVWCAEFSRKGQYLATGGADGLVKIW IG  E+ S A  +                       +G+   RF G LER DSDVSLASV           +A GSTFDCQ   PP+  GELV+GGRASRVMRGH+GDVVDLSWS NAFLLSAGRDGSLRLWHP RLGCVHLFPQTG+ATPTSC+F+PRLENSFAT GEDGK+RVWKITSAKVEA  Q+P R THVRFSPDG+ LAAGM+GGQVRF+TS+SL P+AQV  +G  GR
Sbjct:  679 GELQLSPGYQALAAAA------NGRPGGGGNGFASPTSRGLSPESGAVAEAEAVEXXXXXXGMKMLQHFKAHVGAVWCAEFSRKGQYLATGGADGLVKIWDIGVEEDGSRALDSSXXXXXXXXXXXXXXXXXXXXXXAGA---RFTGRLERSDSDVSLASVXXXXXXXXXXPSAAGSTFDCQDPVPPLRRGELVVGGRASRVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVRVWKITSAKVEAVAQLPNRATHVRFSPDGKALAAGMVGGQVRFMTSESLQPMAQVLVNGANGR 1006          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: A0A804J7B4_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musa TaxID=4640 RepID=A0A804J7B4_MUSAM)

HSP 1 Score: 116 bits (290), Expect = 3.550e-25
Identity = 77/241 (31.95%), Postives = 115/241 (47.72%), Query Frame = 1
Query:  199 QYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWH-IGAPEEDSGAPPNRDRGRGASGSPPPRFIGLERCDSDVSLASVASVVSVANTACGSTFD--CQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRFLTSDSLH 912
            Q  +AH GA+   +FS  G+YLATGGADG+V++WH +    +D  + P+ D         P         +++++           +     T D  C V PP V      +  +     RGH  DV+DLSWS N  LLS+ +D ++RLW  G   C+ +F  T   T     F+P  EN F +   DGKIR+W ++  +V   V +    T + + P G+ LA G + G  RF  +   H
Sbjct:  256 QDIKAHDGAILAMKFSPDGRYLATGGADGIVRVWHAMECERKDEFSIPDDD---------PSCLYFTVNHNAELTPVRADKEKKPKSKRTRRTADSACVVIPPHV----FRLSEKPVHEFRGHDADVLDLSWSMNQLLLSSSKDKTVRLWQVGSDRCLKVFSHTNYVTCVQ--FNPMNENYFVSGSIDGKIRIWDVSGCQVVDWVYIREIVTAIGYHPKGKRLAIGTLKGNCRFYDASDTH 481          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: J3M0H9_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3M0H9_ORYBR)

HSP 1 Score: 114 bits (284), Expect = 2.050e-24
Identity = 81/250 (32.40%), Postives = 118/250 (47.20%), Query Frame = 1
Query:  199 QYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGAPEEDSGAPPNRDRGRGASGSPPPRFIGLERCDSDVSLASVASVVSVANTACGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRF--LTSDSLHPLAQVRSGGR 942
            Q  +AH GA+   +FS  GQ LATGG DG+V++W +    +D   P +            P  + L +      LA V       +   G     + A   +P+    I        RGHSGDV+DLSWS +  LLSA  D ++R+W  G   C+ ++P +   T     F+P  EN F +   DGKIRVW I  + V   V +    T VR+ PDG+++  G + G  RF  L+ + L    Q+   G+
Sbjct:  220 QVIKAHDGAILTMKFSPDGQLLATGGEDGVVRVWSV-MQSKDCKIPLDD-----------PSCVYL-KARHKYELAPVNIENGKKSKINGLKKSAEPACIVIPTVVFQISEEPLHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEMGCANCIRVYPHSNFVTCVQ--FNPVDENFFISGSIDGKIRVWDIPGSSVVDWVDIRDIVTAVRYRPDGKLVVVGTITGNCRFYELSDNLLQLKTQIALNGK 454          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: UPI001929C1DE (LOW QUALITY PROTEIN: 2-deoxy-glucose resistant protein 2-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929C1DE)

HSP 1 Score: 113 bits (283), Expect = 2.750e-24
Identity = 82/238 (34.45%), Postives = 110/238 (46.22%), Query Frame = 1
Query:  199 QYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGAPEEDSGAPPNRDRGRGASGSPPPRFIGLERCDSDVSL-ASVASVVSVANTACGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRFL-TSDS 906
            Q  +AH GA+   +FS  GQ+LA+GG DG+V++W +   E         D      G P   +  + +    V L A              S   C V PP V      I        RGH GDV+DLSWS N +LLS+  D ++RLW  G  GCV +F  +   T     F+P  EN F +   DGKIR+W I+  +V     +    T V + PDG+    G M G  RF  TSD+
Sbjct:  217 QDIQAHEGAILTMKFSPDGQFLASGGEDGVVRVWRVMECERS-------DDDDLLEGDPSCVYFRVNQNSELVPLYADKEKKSKFKGVRRSSDSACVVVPPNV----FRISEEPIHEFRGHDGDVLDLSWSKNQYLLSSSDDKTVRLWRVGFNGCVKVFSHSNYVT--CIQFNPMDENYFISGSIDGKIRIWDISRCRVVDWTDVKEIVTAVCYRPDGKGGVVGTMTGDCRFYDTSDN 441          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: A0A0N4UBY5_DRAME (WD repeat-containing protein 44 n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UBY5_DRAME)

HSP 1 Score: 112 bits (280), Expect = 8.100e-24
Identity = 77/244 (31.56%), Postives = 117/244 (47.95%), Query Frame = 1
Query:  214 HTGAVWCAEFSRKGQYLATGGADGLVKIWHIGAPEEDSGAPPNRDRGRGASGSPPPRFIGLERCDSDVSLASVASVVSVANTACGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEA--EVQMPTRTTHVRFSPDGRILAAGMMGGQVRFLTSDSL--HPLAQVRS 933
            HTGAVWC +FS  G+ LAT G D ++++W +     +  A  N+ R R  S       + L       ++  +      ++   G++ D     P   S   V+  +     RGH+ DV+D+SWS N F+LS+G D +++LWH  R  C+  F      T    AF P+ +  F +   DGK+R+W I   KV    EV+     T + F  +G+  A G   G+  F T+D L  H +  VRS
Sbjct:  563 HTGAVWCMKFSLCGRLLATAGQDNIIRVWVL----RNHLAYFNKMRDRYNSQLKSSN-VSLNETSLQKAMQEIEKDYHSSSNTLGNSVDSSDDDPNADSTFFVMAPKPLCSYRGHTADVLDISWSRNYFILSSGMDRTVKLWHLSRAECLCCFQHIDFVT--CIAFMPKDDRYFLSGSLDGKLRLWHIPDKKVALWNEVEQVKFITAIAFVKNGKFAAVGTYDGRCFFYTTDQLKYHTVIDVRS 799          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: I2G540_USTH4 (Uncharacterized protein n=3 Tax=Ustilago TaxID=5269 RepID=I2G540_USTH4)

HSP 1 Score: 111 bits (278), Expect = 1.340e-23
Identity = 79/233 (33.91%), Postives = 112/233 (48.07%), Query Frame = 1
Query:  229 WCAEFSRKGQYLATGGADGLVKIWHIGAP-----EEDSGAPPNRDRGRGASGSPPPRFIGLERCDSDVSLASVASVVSVANTACGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGM-MGGQVRFLTSDSL 909
            +  +FS  G+YLA  G+D L++++ + A      EE   A P R                 + C   +S A   S VS  +T   +  D +   P       V      RV   HSGDV+DLSWS N FLLS   D + +LWHP R  C+  F    +AT +S  FHP  +  F T G DGK+R+W IT+ +V++   +P   T V FS  G+++  G   G  + F  SD+L
Sbjct:  325 YALQFSLDGRYLAAAGSDHLIRVYEVIASHNERAEEIELAQPQRTE---------------DFCTRKLSAACPTSSVSSRST---TKSDIRTGTPDFAP---VFRSVPVRVFAAHSGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSECLCTFAT--AATVSSVDFHPTDDRFFVTGGLDGKLRLWNITARRVQSVHDIPGVITAVAFSSSGQVVCVGTHSGSMITFSCSDTL 534          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: UPI001F5CF657 (WD repeat-containing protein 44-like isoform X1 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CF657)

HSP 1 Score: 110 bits (275), Expect = 3.280e-23
Identity = 82/266 (30.83%), Postives = 110/266 (41.35%), Query Frame = 1
Query:  199 QYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGA------PEEDSGAPPNRDRGRGASGSPPPRFIGLERCDSDVS-LASVASVVSVANTACGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTG----------------------------SATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRF 891
            Q  +AH GA+   +FS  GQ+LATGG DG+V++W +        P +D      + R          R  GL     D   L  V S+    ++AC            +P+    I         GHSGDV+DLSWS N  LLSA  D ++RLW  G   C+ +FP +                              +  T   F P  +NSF T   DGK+RVW IT   V   V +    T V + PDG+    G + G  RF
Sbjct:  249 QVIKAHDGAILTMKFSPDGQFLATGGEDGVVRVWSVSQSDDCKIPTDDPSCVYLKSR----------RKHGLTPVSVDTEKLCKVKSMKKTGDSAC----------IVIPASVFHISEEPLHEFFGHSGDVLDLSWSNNKHLLSASTDKTVRLWEIGSANCISVFPHSNFGKLIVSYILCFKAYVFTYGLKLTVCFPCSAVTCVQFDPTNDNSFITGSIDGKVRVWDITRGSVADWVDVRDIVTAVCYRPDGKGAVVGTITGNCRF 494          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: A0A8J5VG55_ZIZPA (Uncharacterized protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VG55_ZIZPA)

HSP 1 Score: 110 bits (275), Expect = 3.330e-23
Identity = 80/238 (33.61%), Postives = 112/238 (47.06%), Query Frame = 1
Query:  199 QYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGAPEEDSGAPPNRD-----RGRGASGSPPPRFIGLERCDSDVSLASVASVVSVANTACG--STFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRF 891
            Q  +AH GA+   +FS  GQ+LA+GG DG+VK+W +    ED   P +       + R   G  P      ++         ++ +   A +AC    T   Q++  PV               RGHSGDV+DLSWS +  LLSA  D ++RLW  G   CV +FP +   T     F+P  EN F +   DGKIRVW I  + V   V +    T + + PDG+    G + G  RF
Sbjct:  306 QVIKAHDGAIVTMKFSPDGQFLASGGEDGIVKVWTV-MQSEDCKIPLDDPSCVYLKARHKYGLAPVNVENEKKM-------KISGLKKSAESACIVIPTMAFQISEEPV------------HEFRGHSGDVLDLSWSSDKHLLSASTDKTVRLWKIGSAKCVRVFPHSNFVTCVQ--FNPVDENFFISGSIDGKIRVWDILESSVVDWVDIRDILTAICYRPDGKGAVVGTITGNCRF 521          
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Match: A0A388JNN9_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JNN9_CHABU)

HSP 1 Score: 110 bits (275), Expect = 4.110e-23
Identity = 81/260 (31.15%), Postives = 115/260 (44.23%), Query Frame = 1
Query:  187 MKLLQYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGAPEEDSGAPPNRDRGRGASGSPPPRFIGLE-RCDSDV---------SLASVASVVSVANTACGSTFDCQVAPPPVP--------SGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKIRVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRFLTSDSLH 912
            +KL Q  RAH GA+W  +FSR G+Y+A+ G D +VK+W I         P +  RG GAS        G   R D +          S +S  S  S+ +   GS         P P         G   I     RV +GH+GDV+D+SWS + FLL++  D S+RLWH     C+ +FP +   T     F+P  +  F +   D K+R+W I    V     +    T   ++ DG+    G   G  RF +    H
Sbjct:  960 LKLGQELRAHDGAIWTIKFSRDGKYMASAGQDKIVKVWLI-----LDRKPSSNTRGSGASXXXXXXXXGRTCRADDECEVGNSGRLSSSSSSGSCHSLGSNGNGSRLGGXXXSAPAPPGATAGSWGGSFYIQETPHRVFKGHTGDVLDMSWSKSQFLLTSSMDNSVRLWHISVDQCLRVFPHSDFVTCVD--FNPVDDKFFISGSFDDKLRIWNIPDFSVADWTDVREIVTTACYTRDGKGAIVGSHKGICRFYSITGNH 1212          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7978.18719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWS7_9PHAE4.200e-11564.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMN8_ECTSI4.380e-11562.91WD repeat protein (Partial) (Fragment) n=1 Tax=Ect... [more]
A0A804J7B4_MUSAM3.550e-2531.95(wild Malaysian banana) hypothetical protein n=3 T... [more]
J3M0H9_ORYBR2.050e-2432.40Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
UPI001929C1DE2.750e-2434.45LOW QUALITY PROTEIN: 2-deoxy-glucose resistant pro... [more]
A0A0N4UBY5_DRAME8.100e-2431.56WD repeat-containing protein 44 n=1 Tax=Dracunculu... [more]
I2G540_USTH41.340e-2333.91Uncharacterized protein n=3 Tax=Ustilago TaxID=526... [more]
UPI001F5CF6573.280e-2330.83WD repeat-containing protein 44-like isoform X1 n=... [more]
A0A8J5VG55_ZIZPA3.330e-2333.61Uncharacterized protein n=2 Tax=Zizania palustris ... [more]
A0A388JNN9_CHABU4.110e-2331.15Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7978contigM-pyrifera_M_contig7978:120..3290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.7
Seed ortholog evalue3.4e-100
Seed eggNOG ortholog2880.D8LMN8
Preferred nameWDR44
KEGG koko:K20241
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-02_002470.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons4
Model size948
Cds size936
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7978.18719.1prot_M-pyrifera_M_contig7978.18719.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7978 120..3278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.2767444-CDS-M-pyrifera_M_contig7978:119..3081622816701.2767444-CDS-M-pyrifera_M_contig7978:119..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 120..308 -
1692278128.005387-CDS-M-pyrifera_M_contig7978:119..3081692278128.005387-CDS-M-pyrifera_M_contig7978:119..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 120..308 -
1622816701.2888048-CDS-M-pyrifera_M_contig7978:906..11781622816701.2888048-CDS-M-pyrifera_M_contig7978:906..1178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 907..1178 -
1692278128.0201392-CDS-M-pyrifera_M_contig7978:906..11781692278128.0201392-CDS-M-pyrifera_M_contig7978:906..1178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 907..1178 -
1622816701.300268-CDS-M-pyrifera_M_contig7978:2221..24141622816701.300268-CDS-M-pyrifera_M_contig7978:2221..2414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 2222..2414 -
1692278128.0338752-CDS-M-pyrifera_M_contig7978:2221..24141692278128.0338752-CDS-M-pyrifera_M_contig7978:2221..2414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 2222..2414 -
1622816701.3132536-CDS-M-pyrifera_M_contig7978:2996..32781622816701.3132536-CDS-M-pyrifera_M_contig7978:2996..3278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 2997..3278 -
1692278128.0488694-CDS-M-pyrifera_M_contig7978:2996..32781692278128.0488694-CDS-M-pyrifera_M_contig7978:2996..3278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7978 2997..3278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.3276222-UTR-M-pyrifera_M_contig7978:3278..32901622816701.3276222-UTR-M-pyrifera_M_contig7978:3278..3290Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7978 3279..3290 -
1692278128.0629473-UTR-M-pyrifera_M_contig7978:3278..32901692278128.0629473-UTR-M-pyrifera_M_contig7978:3278..3290Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7978 3279..3290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7978.18719.1

>prot_M-pyrifera_M_contig7978.18719.1 ID=prot_M-pyrifera_M_contig7978.18719.1|Name=mRNA_M-pyrifera_M_contig7978.18719.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=312bp
MSPGFHALAAAAVGDGLAMGTSGGGGGLGASSASRMLSPTSGAAAVAATA
EAMGAVKGMKLLQYFRAHTGAVWCAEFSRKGQYLATGGADGLVKIWHIGA
PEEDSGAPPNRDRGRGASGSPPPRFIGLERCDSDVSLASVASVVSVANTA
CGSTFDCQVAPPPVPSGELVIGGRASRVMRGHSGDVVDLSWSPNAFLLSA
GRDGSLRLWHPGRLGCVHLFPQTGSATPTSCAFHPRLENSFATAGEDGKI
RVWKITSAKVEAEVQMPTRTTHVRFSPDGRILAAGMMGGQVRFLTSDSLH
PLAQVRSGGRGR
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mRNA from alignment at M-pyrifera_M_contig7978:120..3290-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7978.18719.1 ID=mRNA_M-pyrifera_M_contig7978.18719.1|Name=mRNA_M-pyrifera_M_contig7978.18719.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3171bp|location=Sequence derived from alignment at M-pyrifera_M_contig7978:120..3290- (Macrocystis pyrifera P11B4 male)
GGCGCCGTGCAGATGTCTCCGGGTTTCCATGCGCTTGCTGCGGCGGCGGT CGGGGACGGGCTGGCGATGGGAACCAGCGGCGGCGGCGGCGGCCTCGGGG CTTCGTCGGCGAGCAGGATGCTGTCTCCGACTTCCGGGGCGGCCGCGGTG GCGGCGACAGCTGAGGCGATGGGGGCGGTGAAGGGAATGAAGCTTCTCCA GTACTTCCGGGCGCACACAGGGGCGGTGTGGTGCGCGGAGTTCAGCCGCA AGGGTCAGTATCTGGCGACGGGAGGCGCTGACGGATTGGTGAAGGTGAGG AGAGGAGAGAAGAGGAGAGGGAAGCGTTTTTCTCCCGTATTTTTGCCGTA TTTTTCCGTCTTTTGTTTCTCTCGTGTTTTTCATAGTCTTTGACCATGCA TGATATGTATATAAGTGTATGTTCGTATTTTTGCGTAGGTTTTGTTATTT TTGCTCTTTCTGTTTTGTTGTTTTGTTTACTGTTTTCGCGTTATTGGTGT GTACGTTTTTTGTGTTTTTTCGTGGGATGGGAGGAGGGGGGATTTCCTCT TCTTTCCTTTTGTTGCTTGGATGGATGGAGGGAGGGAGGGAGAGAGGAAT GTTTTTTTTGTTCTTCTTCGTTACATTTGAGGGAGGAAAGTGGTAGCAGC AGCAGCAGCAGCAGGAGCATCACGACCATGACCGATAGAATCTCGGTCAT TTTTATAACCCCCCACCACCGCTCCCGCCCTCGCGCCACCTTCTCCTTCC GGCAACGCCGCTCCTCCCCCCCTTTTCCTCTTCCTCCTCATCCTCCTTTT CCCCCCCTTCCCCCCCTTCCCCTGCCTCCTCCTCCTCCTCCTCCTCCTCC TCTCCTATCGATCGCCGCGAAAATAGATCTGGCACATTGGCGCTCCTGAA GAGGACTCAGGGGCCCCGCCGAACCGAGATAGGGGCAGGGGGGCCAGCGG CTCGCCGCCCCCCCGCTTTATCGGCTTGGAGCGTTGCGACAGCGATGTGT CCTTAGCCTCCGTGGCATCTGTTGTGTCGGTGGCTAATACCGCGTGCGGG AGCACGTTCGACTGTCAAGGTGAGGTAACAAACAGGAGGTGGTTTTCCAG GGGAACATGTTTTATGCGCGGGAGGAGGGGTGGGGCGGGGTACTCATCTG TTGCTTGCCTTGGTCATTTTTATCCTGACCACGCATCCCTTCCGAGACGG AGCAGTTCCTACTCCTAATACAGACGCCTCCGACACTTGAGCACTCATTT CGTTTCTTCCATATATTACACATTTGAAATATATGTACATATATATAAAC TTTCCTATTATACCTGGTACATTTTACGTACCTGTTTTGCCTTTTGAGGC AGCCGTCTCTCTCCTAGGATGTCCATCGTTTTTTCGGTTAGGGGGAGTGG GGGGTGAGGGAGCTACACTAGCTCTGTCCGTTTTCGTGGAGCGGGTCGAC AGCGATGTGTCCTTAGCCTCCGTGGCGTCTGTTGTTCCTGTCGCGGGCAT CGGTTGTGGAAGCACGTTGGAATGTCATCGTAAGAGAAGAGCGGCCGTGA GTCCGATGTTAGCGTTCCAGTAGTCGCGGAGATGGTTCGCCGACTTACGC GCGTGGGTGGCGTGTTTTTTTTACGTGCGGGAATGGGGGGGGGGGAGAGG GGAAGGGAGCTGTTAATAGCTTCGTTCGGTATCGCTGAGGGAACTGTTTG CTTGTCCAGCGTTCGGGGAGGGCACGATTCATCCTCCCCCCCCCCCCTAA AAAACAACCAACCAACCAACCAGCCAGCCAGCCAATCAATCAATGAGCCT ACCAAATCATGGAGCTCCCCTAACCAAACCATACCACACCACACCAACGT CCCAACCCAACCCAACTCAGCTCAACTCAACCCACCCCAACACAACTTAA CCCTATCCTACCCTATCCTACCCTACCCTACCCAACCCAACCCTACCCTA ACCTACCCAACCCAACCCAACCAAACCCAACCCAACCCAACCCAACCCAA CCTCACTCATCCCAACCCAACCCAAAACCCAGCCCAACGCAGCCCGACCC AACCCAACCCAAAACCCAGCCTAACTCAGGCCTACCCCACCCGCCCTTCA TTTTTCGAACAGTCGCGCCCCCCCCAGTCCCTTCGGGGGAGCTGGTGATC GGCGGCCGCGCGTCGCGAGTGATGAGAGGCCATTCCGGCGACGTCGTCGA CCTGTCTTGGTCGCCAAACGCCTTCCTCCTGTCTGCGGGGCGGGATGGCA GCCTGAGGCTGTGGCACCCGGGGCGGCTGGGTTGCGTCCACTTGTTTCCT CAGACCGGCTCTGCGACGCCGACGTCCTGCGCGTTCCACCCCCGACTGGA GAACTCCTTCGCTACGGCCGGGGAGGACGGCAAGGTGAGGGAAGGAGGGA GGGAGGGAGGGGACGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGG GCGGGAGGGGGGACGGAGGGAAGGAGGAAAGGAGGAAAGGAGGGAGGGAA GGAGGGAGGGAAGGGAGAGAGGGAGGGAAGGGAGGGAGGGAGGGAGGGAG GGTGGGTGGGAGGGAGGGCGAGAGGGCGCGAAGGCGGGAGGTGTTTTTTT TTCGTTGTTTTAGGGGGGTGTTTCGTGTTTTGTGCTTGTGTTTGTACCCA CGAAATGTACCCATACTGTAATTGTACTGTTGTACCTGGTATGAGGTTTT CATCATTCGCACGATTTGTTGCACGATTTGTGTAATTTGTATGGTAGGCT TGGTTTCGGATTGTGTGATCTTTGTATGATTTGTATGATGCTGTTCGGTT TGTATGCGCGAGGGTGGCGCCCTCGCCCTCAACGACCGGACGTCGGATAG AAGTGGGCGTTGTTCTTCATGCAGACCGCCGCTCTTCTTCCCCCCCTTCG CTGCTCCTCCCTCTCCCCGTCCCCCCTCCCTATCCTCTAAAGCCTCCTCC CCACCCCTCCCCCTTTGCCCCCCACTGGCCAGATTCGCGTGTGGAAGATA ACCTCAGCGAAGGTGGAGGCGGAGGTTCAGATGCCCACGCGCACGACGCA CGTCAGGTTTTCACCTGACGGAAGGATACTTGCCGCCGGCATGATGGGGG GGCAGGTCAGGTTCTTGACGTCAGATTCTCTCCACCCCTTGGCGCAGGTG AGAAGTGGAGGAAGAGGACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7978:120..3290-

>mRNA_M-pyrifera_M_contig7978.18719.1 ID=mRNA_M-pyrifera_M_contig7978.18719.1|Name=mRNA_M-pyrifera_M_contig7978.18719.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1872bp|location=Sequence derived from alignment at M-pyrifera_M_contig7978:120..3290- (Macrocystis pyrifera P11B4 male)
ATGTCTCCGGGTTTCCATGCGCTTGCTGCGGCGGCGGTCGGGGACGGGCT
GGCGATGGGAACCAGCGGCGGCGGCGGCGGCCTCGGGGCTTCGTCGGCGA
GCAGGATGCTGTCTCCGACTTCCGGGGCGGCCGCGGTGGCGGCGACAGCT
GAGGCGATGGGGGCGGTGAAGGGAATGAAGCTTCTCCAGTACTTCCGGGC
GCACACAGGGGCGGTGTGGTGCGCGGAGTTCAGCCGCAAGGGTCAGTATC
TGGCGACGGGAGGCGCTGACGGATTGGTGAAGATGTCTCCGGGTTTCCAT
GCGCTTGCTGCGGCGGCGGTCGGGGACGGGCTGGCGATGGGAACCAGCGG
CGGCGGCGGCGGCCTCGGGGCTTCGTCGGCGAGCAGGATGCTGTCTCCGA
CTTCCGGGGCGGCCGCGGTGGCGGCGACAGCTGAGGCGATGGGGGCGGTG
AAGGGAATGAAGCTTCTCCAGTACTTCCGGGCGCACACAGGGGCGGTGTG
GTGCGCGGAGTTCAGCCGCAAGGGTCAGTATCTGGCGACGGGAGGCGCTG
ACGGATTGGTGAAGATCTGGCACATTGGCGCTCCTGAAGAGGACTCAGGG
GCCCCGCCGAACCGAGATAGGGGCAGGGGGGCCAGCGGCTCGCCGCCCCC
CCGCTTTATCGGCTTGGAGCGTTGCGACAGCGATGTGTCCTTAGCCTCCG
TGGCATCTGTTGTGTCGGTGGCTAATACCGCGTGCGGGAGCACGTTCGAC
TGTCAAGATCTGGCACATTGGCGCTCCTGAAGAGGACTCAGGGGCCCCGC
CGAACCGAGATAGGGGCAGGGGGGCCAGCGGCTCGCCGCCCCCCCGCTTT
ATCGGCTTGGAGCGTTGCGACAGCGATGTGTCCTTAGCCTCCGTGGCATC
TGTTGTGTCGGTGGCTAATACCGCGTGCGGGAGCACGTTCGACTGTCAAG
TCGCGCCCCCCCCAGTCCCTTCGGGGGAGCTGGTGATCGGCGGCCGCGCG
TCGCGAGTGATGAGAGGCCATTCCGGCGACGTCGTCGACCTGTCTTGGTC
GCCAAACGCCTTCCTCCTGTCTGCGGGGCGGGATGGCAGCCTGAGGCTGT
GGCACCCGGGGCGGCTGGGTTGCGTCCACTTGTTTCCTCAGACCGGCTCT
GCGACGCCGACGTCCTGCGCGTTCCACCCCCGACTGGAGAACTCCTTCGC
TACGGCCGGGGAGGACGGCAAGTCGCGCCCCCCCCAGTCCCTTCGGGGGA
GCTGGTGATCGGCGGCCGCGCGTCGCGAGTGATGAGAGGCCATTCCGGCG
ACGTCGTCGACCTGTCTTGGTCGCCAAACGCCTTCCTCCTGTCTGCGGGG
CGGGATGGCAGCCTGAGGCTGTGGCACCCGGGGCGGCTGGGTTGCGTCCA
CTTGTTTCCTCAGACCGGCTCTGCGACGCCGACGTCCTGCGCGTTCCACC
CCCGACTGGAGAACTCCTTCGCTACGGCCGGGGAGGACGGCAAGATTCGC
GTGTGGAAGATAACCTCAGCGAAGGTGGAGGCGGAGGTTCAGATGCCCAC
GCGCACGACGCACGTCAGGTTTTCACCTGACGGAAGGATACTTGCCGCCG
GCATGATGGGGGGGCAGGTCAGGTTCTTGACGTCAGATTCTCTCCACCCC
TTGGCGCAGGTGAGAAGTGGAGGAAGAGGACGTATTCGCGTGTGGAAGAT
AACCTCAGCGAAGGTGGAGGCGGAGGTTCAGATGCCCACGCGCACGACGC
ACGTCAGGTTTTCACCTGACGGAAGGATACTTGCCGCCGGCATGATGGGG
GGGCAGGTCAGGTTCTTGACGTCAGATTCTCTCCACCCCTTGGCGCAGGT
GAGAAGTGGAGGAAGAGGACGT
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