mRNA_M-pyrifera_M_contig7977.18717.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7977.18717.1
Unique NamemRNA_M-pyrifera_M_contig7977.18717.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7977.18717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7977contigM-pyrifera_M_contig7977:3355..3787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.1951911-UTR-M-pyrifera_M_contig7977:3354..34661622816701.1951911-UTR-M-pyrifera_M_contig7977:3354..3466Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7977 3355..3466 +
1692278127.964081-UTR-M-pyrifera_M_contig7977:3354..34661692278127.964081-UTR-M-pyrifera_M_contig7977:3354..3466Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7977 3355..3466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.2093945-CDS-M-pyrifera_M_contig7977:3466..37871622816701.2093945-CDS-M-pyrifera_M_contig7977:3466..3787Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7977 3467..3787 +
1692278127.9779637-CDS-M-pyrifera_M_contig7977:3466..37871692278127.9779637-CDS-M-pyrifera_M_contig7977:3466..3787Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7977 3467..3787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7977.18717.1prot_M-pyrifera_M_contig7977.18717.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7977 3467..3787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7977.18717.1

>prot_M-pyrifera_M_contig7977.18717.1 ID=prot_M-pyrifera_M_contig7977.18717.1|Name=mRNA_M-pyrifera_M_contig7977.18717.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MIREIFQIIYNLLSSASPATSSSVSGVAVISRPPAAALGCGIGLCNCSVS
PAASKGFRSLSARIGLVPESSLTVPSVGPRRSGSSSSLADDSGSTTSSTS
GGECSGG
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mRNA from alignment at M-pyrifera_M_contig7977:3355..3787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7977.18717.1 ID=mRNA_M-pyrifera_M_contig7977.18717.1|Name=mRNA_M-pyrifera_M_contig7977.18717.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=433bp|location=Sequence derived from alignment at M-pyrifera_M_contig7977:3355..3787+ (Macrocystis pyrifera P11B4 male)
CATGAGAACGGGGGCACCCACCCAACCGTAGGTATACAGCAGGACACCGC
GCGTTAAAAAAACAACGCCCTGTGAATTTCGCGAGCATGAGTGGCCAACG
AAACTCGTGCGGATGATCAGGGAGATTTTTCAGATAATATACAACCTGCT
CTCATCGGCTTCGCCGGCAACATCGTCGTCGGTGTCGGGAGTGGCGGTGA
TATCGCGACCACCTGCAGCAGCGCTGGGGTGCGGTATTGGTCTCTGCAAC
TGCTCGGTCTCTCCAGCCGCCTCCAAGGGCTTCCGTTCCTTATCGGCGCG
CATCGGCTTGGTTCCCGAGTCGTCGCTTACGGTGCCGTCCGTTGGCCCGC
GGCGATCTGGGAGTAGTTCCTCCCTTGCCGACGACTCGGGCTCCACAACG
TCATCCACATCGGGCGGCGAGTGCAGTGGAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7977:3355..3787+

>mRNA_M-pyrifera_M_contig7977.18717.1 ID=mRNA_M-pyrifera_M_contig7977.18717.1|Name=mRNA_M-pyrifera_M_contig7977.18717.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig7977:3355..3787+ (Macrocystis pyrifera P11B4 male)
ATGATCAGGGAGATTTTTCAGATAATATACAACCTGCTCTCATCGGCTTC
GCCGGCAACATCGTCGTCGGTGTCGGGAGTGGCGGTGATATCGCGACCAC
CTGCAGCAGCGCTGGGGTGCGGTATTGGTCTCTGCAACTGCTCGGTCTCT
CCAGCCGCCTCCAAGGGCTTCCGTTCCTTATCGGCGCGCATCGGCTTGGT
TCCCGAGTCGTCGCTTACGGTGCCGTCCGTTGGCCCGCGGCGATCTGGGA
GTAGTTCCTCCCTTGCCGACGACTCGGGCTCCACAACGTCATCCACATCG
GGCGGCGAGTGCAGTGGAGGCATGATCAGGGAGATTTTTCAGATAATATA
CAACCTGCTCTCATCGGCTTCGCCGGCAACATCGTCGTCGGTGTCGGGAG
TGGCGGTGATATCGCGACCACCTGCAGCAGCGCTGGGGTGCGGTATTGGT
CTCTGCAACTGCTCGGTCTCTCCAGCCGCCTCCAAGGGCTTCCGTTCCTT
ATCGGCGCGCATCGGCTTGGTTCCCGAGTCGTCGCTTACGGTGCCGTCCG
TTGGCCCGCGGCGATCTGGGAGTAGTTCCTCCCTTGCCGACGACTCGGGC
TCCACAACGTCATCCACATCGGGCGGCGAGTGCAGTGGAGGC
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