mRNA_M-pyrifera_M_contig79710.18706.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79710.18706.1
Unique NamemRNA_M-pyrifera_M_contig79710.18706.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A5A8DFQ2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DFQ2_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 3.810e-28
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   10 PDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFVWLHYVSNRTVSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCILALRPALSDA 405
            PDLYGPLW++ATLVF++G  +N   + TF P   +S+++YDF +VT A    FGALV VP A +  L Y     V+ + L C++GYS+  ++P T+LCA+P  A++W   A A  G++ F I +L P L  A
Sbjct:  155 PDLYGPLWINATLVFLIGAMANFGAWATFDPAGGESLFKYDFSLVTQAFGLVFGALVLVPAAAWAVLRYHGAPPVALTTLVCLWGYSMVHYIPATMLCAVPSVALRWAAAAFAAAGAALFLIRSLVPLLRAA 286          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A482RF40_9ARCH (Yip1 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RF40_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 3.300e-23
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    7 HPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFVWLHYVSNRTVSPSVLACVYGYSLTPFLPT 291
             PDLYGP+W+ ATL FV+GV SN + + +F PE   SIW+YDF ++++A  T FG + A  +A ++ L Y+ +  +    L C+YGYSLTP+L T
Sbjct:   87 RPDLYGPVWIGATLSFVIGVGSNLSSWLSFVPEEARSIWQYDFTLLSLALCTVFGFVAAAAVAAWITLTYIGSAVIPLPQLVCIYGYSLTPYLVT 181          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A1I8IY90_9PLAT (Protein YIPF n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IY90_9PLAT)

HSP 1 Score: 99.8 bits (247), Expect = 1.730e-22
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 IRH-PDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFV--WLHYVSNRTVSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCILALRPALSDAARQ 414
            IRH PDLYGP WV  TLVFV  +A N A +F  S    + +W YDFR VT AA   +     VPL L+   W   V  +     +L C+YGYSL+ ++P ++LC I + A+QW L+ LA+  S     L+L P++S   R+
Sbjct:  116 IRHSPDLYGPFWVCTTLVFVTAIAGNLADYFQTSAAGGNYVWVYDFRKVTFAATAIYLYWWLVPLLLWAVTWWRQVPEKYAYLELL-CLYGYSLSIYIPVSVLCVIQLAAVQWALILLAMALSGTVLALSLWPSVSSGERR 255          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: UPI001069C9B4 (protein YIPF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069C9B4)

HSP 1 Score: 97.8 bits (242), Expect = 1.050e-21
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    7 HPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFVWLHYVSNRT-VSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCILALRPALSD 402
            +PDLYGP WV ATLV  + ++ N A +   S E Q   W YDF  +T+AA   FG    VP+A++  L +  N +  S   + CVYGYSL+ F+P ++L  IP+  ++W L+ L LC S A  +L   PA+ D
Sbjct:  115 NPDLYGPFWVCATLVVTIAISGNLANYLIHSGEIQ---WAYDFHKITLAAVAIFGYAWLVPVAVWGVLAWRGNTSGYSFLEIICVYGYSLSIFIPISILWVIPIELVRWVLVILGLCLSGAVLVLTFWPAVRD 244          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A8J5XVF0_DIALT (Protein YIPF n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVF0_DIALT)

HSP 1 Score: 97.8 bits (242), Expect = 1.270e-21
Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    7 HPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFVWLHYV-SNRTVSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCI 375
            +PDLYGP W+S TL+FV+GV+ N A + +F+P      W YDF  ++ A+   +      P+A++  L Y+ +N+ +   V  C+YGYSL  F+P +LLC +P P ++W L++L    S+AF +
Sbjct:  175 NPDLYGPFWISTTLIFVIGVSGNLAKWLSFTPTDAQPHWTYDFTKLSGASTAVYMYASGAPVAVWAALRYMQANKRLVDVV--CMYGYSLASFVPISLLCVLPSPLLRWILISLGCAASAAFLV 296          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A6P5A7X8_BRABE (Protein YIPF n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A7X8_BRABE)

HSP 1 Score: 94.7 bits (234), Expect = 1.170e-20
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    7 HPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLAL--FVWLHYVSNRTVSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCILALRPALSDAARQ 414
            +PD+YGP WV  TLVF   ++ N A +F+ +    +  W YDF  VT+AA   F     VP AL  F+W     +      ++ CVYGYSL+ ++P ++L AIPVPA+QW L  + +  S +  ++   PA+ D  R+
Sbjct:  119 NPDIYGPFWVCLTLVFTTAISGNLANYFSVASSGSEYHWVYDFHKVTLAAAAIFSYAWLVPTALWGFLWWRNSQSHFTFLEII-CVYGYSLSIYVPISVLWAIPVPAVQWALGLVGMLLSGSVLVMTFWPAVRDDERK 255          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A835VMW7_VANPL (Protein YIP n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835VMW7_VANPL)

HSP 1 Score: 93.2 bits (230), Expect = 2.030e-20
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    7 HPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFVWLHYVSNRTVSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCIL 378
            +PDLYGP+W+S TLVF+L    N A +F  +    D  W +D   V  AA   +G ++AVP A+++ L Y          L C++GYSL  F+PT+LL  IPV  ++W ++ L    S+ F  L
Sbjct:  102 NPDLYGPIWISTTLVFMLSAWGNCAAYFMRNQSKTDIAWNFDVNYVNWAACVIYGYMLAVPTAIYLVLRYFETNAALVH-LWCIWGYSLFIFIPTSLLMVIPVEILRWIIILLTGAASAYFIAL 224          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A7S3EVM5_9EUKA (Protein YIPF n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVM5_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 2.450e-20
Identity = 39/110 (35.45%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    7 HPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFVWLHYVSNRTVSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTL 336
            +PDLYGP W+S TL+F + +  N A +F F P + + +W+Y+F  +T+A    +  +  +PL  ++ L Y         VL C+YGYSL+ F+P +++C +P   ++W L
Sbjct:  142 NPDLYGPFWISTTLIFAMAITGNLASYFAFHPTAANPVWKYNFNQLTLAGSVVYSYVTVLPLIFWLLLRYFDASKKLVDVL-CIYGYSLSVFIPISVICVLPSNLLRWLL 250          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: A0A835S7D6_VANPL (Protein YIP n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S7D6_VANPL)

HSP 1 Score: 93.2 bits (230), Expect = 3.900e-20
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    7 HPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTMAAFTFFGALVAVPLALFVWLHYVSNRTVSPSVLACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCIL 378
            +PDLYGP+W+S TLVF+L    N A +F  +    D  W +D   V  AA   +G ++AVP A+++ L Y          L C++GYSL  F+PT+LL  IPV  ++W ++ L    S+ F  L
Sbjct:  102 NPDLYGPIWISTTLVFMLSAWGNCAAYFMRNQSKTDIAWNFDVNYVNWAACVIYGYMLAVPTAIYLVLRYFETNAALVH-LWCIWGYSLFIFIPTSLLMVIPVEILRWIIILLTGAASAYFIAL 224          
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Match: W5U7A3_ICTPU (Protein YIPF n=2 Tax=Ictaluridae TaxID=7996 RepID=W5U7A3_ICTPU)

HSP 1 Score: 92.4 bits (228), Expect = 7.950e-20
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    4 RHPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRY--DFRMVTMAAFTFFGALVAVPLALFVWLHYVSNR---TVSPSVL--ACVYGYSLTPFLPTTLLCAIPVPAIQWTLLALALCGSSAFCILALRPALSD 402
             +PDLYGP W+ ATLVF +GV+ N + F     ES    ++Y  +FR VTMAA   +     VPLAL+ +L + S +   T+S S L   CVYGYSL+ ++P  +L  +P  A++W+ + +ALC S +  +L   P + D
Sbjct:  111 NNPDLYGPFWICATLVFAIGVSGNMSSFLVHRGESH---YKYVPEFRKVTMAATAIYSYAWLVPLALWGFLTWRSRKICSTLSYSFLEIVCVYGYSLSVYIPAVVLWVVPNEALRWSSIVVALCLSGSVLVLTFWPVMRD 247          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79710.18706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DFQ2_CAFRO3.810e-2843.94Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A482RF40_9ARCH3.300e-2346.32Yip1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1I8IY90_9PLAT1.730e-2241.84Protein YIPF n=3 Tax=Macrostomum lignano TaxID=282... [more]
UPI001069C9B41.050e-2141.35protein YIPF1-like n=1 Tax=Dendronephthya gigantea... [more]
A0A8J5XVF0_DIALT1.270e-2138.71Protein YIPF n=1 Tax=Diacronema lutheri TaxID=2081... [more]
A0A6P5A7X8_BRABE1.170e-2037.68Protein YIPF n=4 Tax=Branchiostoma TaxID=7737 RepI... [more]
A0A835VMW7_VANPL2.030e-2038.71Protein YIP n=1 Tax=Vanilla planifolia TaxID=51239... [more]
A0A7S3EVM5_9EUKA2.450e-2035.45Protein YIPF n=2 Tax=Haptolina ericina TaxID=15617... [more]
A0A835S7D6_VANPL3.900e-2038.71Protein YIP n=1 Tax=Vanilla planifolia TaxID=51239... [more]
W5U7A3_ICTPU7.950e-2040.00Protein YIPF n=2 Tax=Ictaluridae TaxID=7996 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79710contigM-pyrifera_M_contig79710:57..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score93.2
Seed ortholog evalue1e-16
Seed eggNOG ortholog7739.XP_002611052.1
Preferred nameYIPF1
Hectar predicted targeting categorysignal peptide
GOsGO:0000138,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005802,GO:0012505,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051020,GO:0097708,GO:0098791
EggNOG free text desc.Rab GTPase binding
EggNOG OGs38XN2@33154,3BJQP@33208,3CWJH@33213,48AJX@7711,KOG3114@1,KOG3114@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.7420561-CDS-M-pyrifera_M_contig79710:56..4761622816700.7420561-CDS-M-pyrifera_M_contig79710:56..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79710 57..476 +
1692278127.7385147-CDS-M-pyrifera_M_contig79710:56..4761692278127.7385147-CDS-M-pyrifera_M_contig79710:56..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79710 57..476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79710.18706.1prot_M-pyrifera_M_contig79710.18706.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79710 57..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79710.18706.1

>prot_M-pyrifera_M_contig79710.18706.1 ID=prot_M-pyrifera_M_contig79710.18706.1|Name=mRNA_M-pyrifera_M_contig79710.18706.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
IRHPDLYGPLWVSATLVFVLGVASNAAGFFTFSPESQDSIWRYDFRMVTM
AAFTFFGALVAVPLALFVWLHYVSNRTVSPSVLACVYGYSLTPFLPTTLL
CAIPVPAIQWTLLALALCGSSAFCILALRPALSDAARQAR
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mRNA from alignment at M-pyrifera_M_contig79710:57..476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79710.18706.1 ID=mRNA_M-pyrifera_M_contig79710.18706.1|Name=mRNA_M-pyrifera_M_contig79710.18706.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig79710:57..476+ (Macrocystis pyrifera P11B4 male)
ATTCGACACCCTGATTTGTACGGACCGTTGTGGGTGAGTGCTACGTTGGT GTTTGTGCTGGGGGTGGCTTCAAACGCTGCTGGCTTTTTCACATTCTCGC CAGAATCTCAGGATTCCATCTGGCGGTACGATTTCCGAATGGTCACCATG GCAGCGTTTACGTTTTTTGGGGCCTTGGTCGCTGTGCCGCTGGCTCTCTT CGTGTGGCTGCACTACGTCTCCAACCGCACCGTTTCCCCTTCTGTGCTCG CTTGCGTCTACGGTTACTCCCTCACCCCATTCCTCCCCACCACCCTCCTC TGCGCCATCCCCGTCCCGGCGATCCAGTGGACACTTCTCGCGCTGGCTCT CTGCGGAAGTTCCGCGTTTTGCATCCTTGCTCTCCGACCGGCTCTCTCTG ACGCTGCCCGCCAAGCGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79710:57..476+

>mRNA_M-pyrifera_M_contig79710.18706.1 ID=mRNA_M-pyrifera_M_contig79710.18706.1|Name=mRNA_M-pyrifera_M_contig79710.18706.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig79710:57..476+ (Macrocystis pyrifera P11B4 male)
ATTCGACACCCTGATTTGTACGGACCGTTGTGGGTGAGTGCTACGTTGGT
GTTTGTGCTGGGGGTGGCTTCAAACGCTGCTGGCTTTTTCACATTCTCGC
CAGAATCTCAGGATTCCATCTGGCGGTACGATTTCCGAATGGTCACCATG
GCAGCGTTTACGTTTTTTGGGGCCTTGGTCGCTGTGCCGCTGGCTCTCTT
CGTGTGGCTGCACTACGTCTCCAACCGCACCGTTTCCCCTTCTGTGCTCG
CTTGCGTCTACGGTTACTCCCTCACCCCATTCCTCCCCACCACCCTCCTC
TGCGCCATCCCCGTCCCGGCGATCCAGTGGACACTTCTCGCGCTGGCTCT
CTGCGGAAGTTCCGCGTTTTGCATCCTTGCTCTCCGACCGGCTCTCTCTG
ACGCTGCCCGCCAAGCGAGGATTCGACACCCTGATTTGTACGGACCGTTG
TGGGTGAGTGCTACGTTGGTGTTTGTGCTGGGGGTGGCTTCAAACGCTGC
TGGCTTTTTCACATTCTCGCCAGAATCTCAGGATTCCATCTGGCGGTACG
ATTTCCGAATGGTCACCATGGCAGCGTTTACGTTTTTTGGGGCCTTGGTC
GCTGTGCCGCTGGCTCTCTTCGTGTGGCTGCACTACGTCTCCAACCGCAC
CGTTTCCCCTTCTGTGCTCGCTTGCGTCTACGGTTACTCCCTCACCCCAT
TCCTCCCCACCACCCTCCTCTGCGCCATCCCCGTCCCGGCGATCCAGTGG
ACACTTCTCGCGCTGGCTCTCTGCGGAAGTTCCGCGTTTTGCATCCTTGC
TCTCCGACCGGCTCTCTCTGACGCTGCCCGCCAAGCGAGG
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