mRNA_M-pyrifera_M_contig79709.18705.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79709.18705.1
Unique NamemRNA_M-pyrifera_M_contig79709.18705.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79709.18705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79709contigM-pyrifera_M_contig79709:160..654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog296587.XP_002506363.1
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categorysignal peptide
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070478,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.Tetratricopeptide repeats
EggNOG OGs34IXR@3041,37HQQ@33090,KOG1127@1,KOG1127@2759
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size495
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.694564-CDS-M-pyrifera_M_contig79709:159..6241622816700.694564-CDS-M-pyrifera_M_contig79709:159..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79709 160..624 -
1692278127.7044847-CDS-M-pyrifera_M_contig79709:159..6241692278127.7044847-CDS-M-pyrifera_M_contig79709:159..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79709 160..624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.7065403-UTR-M-pyrifera_M_contig79709:624..6541622816700.7065403-UTR-M-pyrifera_M_contig79709:624..654Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79709 625..654 -
1692278127.7241292-UTR-M-pyrifera_M_contig79709:624..6541692278127.7241292-UTR-M-pyrifera_M_contig79709:624..654Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79709 625..654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79709.18705.1prot_M-pyrifera_M_contig79709.18705.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79709 160..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79709.18705.1

>prot_M-pyrifera_M_contig79709.18705.1 ID=prot_M-pyrifera_M_contig79709.18705.1|Name=mRNA_M-pyrifera_M_contig79709.18705.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MASCCPSSPAIFVIIARILAADGRPVRARQCYARALALAPSHPVAGPRLV
SMVVEAGGGDGLVVGLRVCSRATQSDPQCIWALWRRAELAFRAARAAEAA
EDREASHLVAVQSVQKLTRVLPLESAVWTLFARIARDAGRGGTASRAAMR
AIAIE
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mRNA from alignment at M-pyrifera_M_contig79709:160..654-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79709.18705.1 ID=mRNA_M-pyrifera_M_contig79709.18705.1|Name=mRNA_M-pyrifera_M_contig79709.18705.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig79709:160..654- (Macrocystis pyrifera P11B4 male)
GGTGCTTCTGAGCAAGGATCATTGTTGGAGATGGCATCTTGTTGTCCATC
TTCTCCTGCAATTTTTGTTATCATTGCAAGAATCTTGGCTGCAGATGGAA
GACCTGTTCGAGCAAGGCAATGCTATGCAAGGGCATTAGCACTTGCACCA
TCTCATCCAGTTGCAGGTCCTCGACTTGTGTCCATGGTGGTGGAAGCGGG
AGGAGGAGATGGATTAGTTGTTGGATTGCGAGTATGTTCTCGAGCAACAC
AATCCGATCCTCAGTGTATTTGGGCATTATGGCGTCGTGCAGAACTTGCA
TTTCGAGCTGCAAGAGCAGCTGAAGCTGCAGAAGACCGAGAGGCATCACA
TTTGGTTGCTGTACAATCTGTACAAAAGTTAACCCGTGTCCTTCCTCTTG
AATCAGCAGTTTGGACGTTGTTTGCACGAATTGCGCGCGATGCTGGGAGG
GGAGGAACAGCTTCACGTGCTGCCATGCGTGCAATTGCTATTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79709:160..654-

>mRNA_M-pyrifera_M_contig79709.18705.1 ID=mRNA_M-pyrifera_M_contig79709.18705.1|Name=mRNA_M-pyrifera_M_contig79709.18705.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig79709:160..654- (Macrocystis pyrifera P11B4 male)
ATGGCATCTTGTTGTCCATCTTCTCCTGCAATTTTTGTTATCATTGCAAG
AATCTTGGCTGCAGATGGAAGACCTGTTCGAGCAAGGCAATGCTATGCAA
GGGCATTAGCACTTGCACCATCTCATCCAGTTGCAGGTCCTCGACTTGTG
TCCATGGTGGTGGAAGCGGGAGGAGGAGATGGATTAGTTGTTGGATTGCG
AGTATGTTCTCGAGCAACACAATCCGATCCTCAGTGTATTTGGGCATTAT
GGCGTCGTGCAGAACTTGCATTTCGAGCTGCAAGAGCAGCTGAAGCTGCA
GAAGACCGAGAGGCATCACATTTGGTTGCTGTACAATCTGTACAAAAGTT
AACCCGTGTCCTTCCTCTTGAATCAGCAGTTTGGACGTTGTTTGCACGAA
TTGCGCGCGATGCTGGGAGGGGAGGAACAGCTTCACGTGCTGCCATGCGT
GCAATTGCTATTGAGATGGCATCTTGTTGTCCATCTTCTCCTGCAATTTT
TGTTATCATTGCAAGAATCTTGGCTGCAGATGGAAGACCTGTTCGAGCAA
GGCAATGCTATGCAAGGGCATTAGCACTTGCACCATCTCATCCAGTTGCA
GGTCCTCGACTTGTGTCCATGGTGGTGGAAGCGGGAGGAGGAGATGGATT
AGTTGTTGGATTGCGAGTATGTTCTCGAGCAACACAATCCGATCCTCAGT
GTATTTGGGCATTATGGCGTCGTGCAGAACTTGCATTTCGAGCTGCAAGA
GCAGCTGAAGCTGCAGAAGACCGAGAGGCATCACATTTGGTTGCTGTACA
ATCTGTACAAAAGTTAACCCGTGTCCTTCCTCTTGAATCAGCAGTTTGGA
CGTTGTTTGCACGAATTGCGCGCGATGCTGGGAGGGGAGGAACAGCTTCA
CGTGCTGCCATGCGTGCAATTGCTATTGAG
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