mRNA_M-pyrifera_M_contig79706.18704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79706.18704.1
Unique NamemRNA_M-pyrifera_M_contig79706.18704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: A0A1A6FX63_NEOLE (Uncharacterized protein (Fragment) n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6FX63_NEOLE)

HSP 1 Score: 119 bits (299), Expect = 3.290e-34
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR H ESYHSYMWNNFFKHVDI+P+N +ILDGNA+DLQAECD +EEKI + GGI+LF+G
Sbjct:    1 MDEYVGLPRNHPESYHSYMWNNFFKHVDIDPSNAHILDGNAEDLQAECDAFEEKIKEAGGIDLFVG 66
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BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: A0A673AXA2_9TELE (Glucosamine-6-phosphate deaminase n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AXA2_9TELE)

HSP 1 Score: 120 bits (300), Expect = 9.820e-33
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR H +SYHSYMWNNFFKH+DINPAN +ILDGNADDL+ EC +YEEKI + GGI+LF+G
Sbjct:   71 MDEYVGLPRSHPQSYHSYMWNNFFKHIDINPANAHILDGNADDLEEECQKYEEKIQEAGGIQLFVG 136
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BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: A0A8C3RF06_9PASS (Glucosamine-6-phosphate deaminase n=1 Tax=Cyanoderma ruficeps TaxID=181631 RepID=A0A8C3RF06_9PASS)

HSP 1 Score: 118 bits (295), Expect = 1.530e-32
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR+H ESYHS+MWNNFFKH+DI+P NV+ILDGNA DLQAECD +EEKI   GGIELF+G
Sbjct:   71 MDEYVGLPRDHPESYHSFMWNNFFKHIDISPENVHILDGNAPDLQAECDAFEEKIKAAGGIELFVG 136
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BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: W5N3R5_LEPOC (Glucosamine-6-phosphate isomerase n=7 Tax=Actinopteri TaxID=186623 RepID=W5N3R5_LEPOC)

HSP 1 Score: 121 bits (303), Expect = 2.460e-32
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR+H ESYHSYMWNNFFKH+DINPAN +ILDGN+ DLQAECD +EEKI + GGI+LF+G
Sbjct:   71 MDEYVGLPRDHPESYHSYMWNNFFKHIDINPANAHILDGNSHDLQAECDAFEEKISKAGGIDLFVG 136
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BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: UPI000058B927 (glucosamine-6-phosphate isomerase 2 isoform X1 n=1 Tax=Mus musculus TaxID=10090 RepID=UPI000058B927)

HSP 1 Score: 116 bits (291), Expect = 4.510e-32
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR H ESYHSYMWNNFFKH+DI+P N +ILDGNA DLQAECD +EEKI + GGI+LF+G
Sbjct:   71 MDEYVGLPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDAFEEKIKEAGGIDLFVG 136
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BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: G3IL43_CRIGR (Glucosamine-6-phosphate isomerase n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3IL43_CRIGR)

HSP 1 Score: 118 bits (296), Expect = 4.630e-32
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR H ESYHSYMWNNFFKHVDI+P N +ILDGNA+DLQAECD +EEKI + GGI+LF+G
Sbjct:   71 MDEYVGLPRNHPESYHSYMWNNFFKHVDIDPNNAHILDGNAEDLQAECDAFEEKIKEAGGIDLFVG 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: A0A673AW26_9TELE (Glucosamine-6-phosphate isomerase n=3 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AW26_9TELE)

HSP 1 Score: 120 bits (300), Expect = 8.230e-32
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR H +SYHSYMWNNFFKH+DINPAN +ILDGNADDL+ EC +YEEKI + GGI+LF+G
Sbjct:   71 MDEYVGLPRSHPQSYHSYMWNNFFKHIDINPANAHILDGNADDLEEECQKYEEKIQEAGGIQLFVG 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: A0A8C2NQF2_CAPHI (Glucosamine-6-phosphate deaminase n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C2NQF2_CAPHI)

HSP 1 Score: 116 bits (290), Expect = 1.230e-31
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR+H ESYHS+MWNNFFKH+DI+P N +ILDGNA DLQAECD +EEKI   GGIELF+G
Sbjct:   71 MDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAADLQAECDAFEEKIKAAGGIELFVG 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: G3NB39_GASAC (Glucosamine-6-phosphate deaminase n=2 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3NB39_GASAC)

HSP 1 Score: 119 bits (299), Expect = 1.260e-31
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR H ESYHSYMWNNFFKH+DI+PANV+ILDGNA+DL+AEC  YE+KI + GGIE+F+G
Sbjct:   71 MDEYVGLPRAHPESYHSYMWNNFFKHIDIDPANVHILDGNAEDLEAECQAYEDKIAEAGGIEMFVG 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Match: A0A0S7L8U7_9TELE (Glucosamine-6-phosphate isomerase n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A0A0S7L8U7_9TELE)

HSP 1 Score: 119 bits (298), Expect = 1.290e-31
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDRYEEKIGQMGGIELFLG 198
            MDEYVGLPR H ESYHSYMWNNFFKH+DI+PAN +ILDGNA+DL+AEC+ YEEKI   GGIELF+G
Sbjct:   71 MDEYVGLPRAHPESYHSYMWNNFFKHIDIDPANAHILDGNAEDLEAECNAYEEKIAAAGGIELFVG 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79706.18704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1A6FX63_NEOLE3.290e-3478.79Uncharacterized protein (Fragment) n=1 Tax=Neotoma... [more]
A0A673AXA2_9TELE9.820e-3377.27Glucosamine-6-phosphate deaminase n=1 Tax=Sphaeram... [more]
A0A8C3RF06_9PASS1.530e-3278.79Glucosamine-6-phosphate deaminase n=1 Tax=Cyanoder... [more]
W5N3R5_LEPOC2.460e-3278.79Glucosamine-6-phosphate isomerase n=7 Tax=Actinopt... [more]
UPI000058B9274.510e-3277.27glucosamine-6-phosphate isomerase 2 isoform X1 n=1... [more]
G3IL43_CRIGR4.630e-3278.79Glucosamine-6-phosphate isomerase n=1 Tax=Cricetul... [more]
A0A673AW26_9TELE8.230e-3277.27Glucosamine-6-phosphate isomerase n=3 Tax=Sphaeram... [more]
A0A8C2NQF2_CAPHI1.230e-3177.27Glucosamine-6-phosphate deaminase n=2 Tax=Boreoeut... [more]
G3NB39_GASAC1.260e-3177.27Glucosamine-6-phosphate deaminase n=2 Tax=Gasteros... [more]
A0A0S7L8U7_9TELE1.290e-3178.79Glucosamine-6-phosphate isomerase n=3 Tax=Percomor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79706contigM-pyrifera_M_contig79706:434..887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score121.7
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog7918.ENSLOCP00000015274
Preferred nameGNPDA2
KEGG rclassRC00163
KEGG koko:K02564
KEGG ReactionR00765
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006040,GO:0006041,GO:0006043,GO:0006044,GO:0006091,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016787,GO:0016853,GO:0016860,GO:0016861,GO:0019239,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046348,GO:0071704,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901575
EggNOG free text desc.Glucosamine-6-phosphate
EggNOG OGs38G53@33154,3BAK1@33208,3CXAB@33213,480AM@7711,490Y0@7742,49S9J@7898,COG0363@1,KOG3148@2759
EC3.5.99.6
COG Functional cat.G
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.6455638-CDS-M-pyrifera_M_contig79706:433..5831622816700.6455638-CDS-M-pyrifera_M_contig79706:433..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79706 434..583 +
1692278127.6783743-CDS-M-pyrifera_M_contig79706:433..5831692278127.6783743-CDS-M-pyrifera_M_contig79706:433..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79706 434..583 +
1622816700.6566157-CDS-M-pyrifera_M_contig79706:839..8871622816700.6566157-CDS-M-pyrifera_M_contig79706:839..887Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79706 840..887 +
1692278127.6919024-CDS-M-pyrifera_M_contig79706:839..8871692278127.6919024-CDS-M-pyrifera_M_contig79706:839..887Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79706 840..887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79706.18704.1prot_M-pyrifera_M_contig79706.18704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79706 434..887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79706.18704.1

>prot_M-pyrifera_M_contig79706.18704.1 ID=prot_M-pyrifera_M_contig79706.18704.1|Name=mRNA_M-pyrifera_M_contig79706.18704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MDEYVGLPREHKESYHSYMWNNFFKHVDINPANVNILDGNADDLQAECDR
YEEKIGQMGGIELFLG
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mRNA from alignment at M-pyrifera_M_contig79706:434..887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79706.18704.1 ID=mRNA_M-pyrifera_M_contig79706.18704.1|Name=mRNA_M-pyrifera_M_contig79706.18704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=454bp|location=Sequence derived from alignment at M-pyrifera_M_contig79706:434..887+ (Macrocystis pyrifera P11B4 male)
ATGGATGAGTATGTGGGGTTGCCACGGGAGCACAAAGAGTCGTACCACTC
GTATATGTGGAACAACTTCTTCAAGCACGTGGACATCAACCCAGCCAATG
TGAACATCCTCGATGGCAACGCTGACGACCTCCAGGCGGAGTGCGACCGC
GTAAGGAAGCAGGAGGGGGGGAATGGGGGGAGGAGGGGAGGTGGTTGGGG
TTGGAAGGGTGTTTTGGGTGTGTGTTTTTGGTGTTTTGGAAGGGGTGCTG
TGTGTTGTGTGTTGTGTGTTGTGTGCTTTGTGTTGTGTGCTTTGTTTTGT
GTGTGGTGTGTTGTATGTAGTATGTAGAATAGTTTTTTATAATTTTCTCA
ACTCTTCTTCTTTGCTTCTTCTATTCTTCTCCTCCTCTTTTCTTTTCTTT
TTCCAGTATGAGGAGAAGATTGGTCAGATGGGTGGGATTGAGTTGTTTTT
GGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79706:434..887+

>mRNA_M-pyrifera_M_contig79706.18704.1 ID=mRNA_M-pyrifera_M_contig79706.18704.1|Name=mRNA_M-pyrifera_M_contig79706.18704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig79706:434..887+ (Macrocystis pyrifera P11B4 male)
ATGGATGAGTATGTGGGGTTGCCACGGGAGCACAAAGAGTCGTACCACTC
GTATATGTGGAACAACTTCTTCAAGCACGTGGACATCAACCCAGCCAATG
TGAACATCCTCGATGGCAACGCTGACGACCTCCAGGCGGAGTGCGACCGC
ATGGATGAGTATGTGGGGTTGCCACGGGAGCACAAAGAGTCGTACCACTC
GTATATGTGGAACAACTTCTTCAAGCACGTGGACATCAACCCAGCCAATG
TGAACATCCTCGATGGCAACGCTGACGACCTCCAGGCGGAGTGCGACCGC
TATGAGGAGAAGATTGGTCAGATGGGTGGGATTGAGTTGTTTTTGGGTTA
TGAGGAGAAGATTGGTCAGATGGGTGGGATTGAGTTGTTTTTGGGT
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