mRNA_M-pyrifera_M_contig79696.18699.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79696.18699.1
Unique NamemRNA_M-pyrifera_M_contig79696.18699.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: A0A7S4M3V5_9EUKA (DNA ligase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M3V5_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 4.730e-38
Identity = 75/141 (53.19%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   13 RDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHFLDQPQ---LGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            + D++L  K LLCK D+RVYN+++KQLVKL+SR+L  SH D+L DLEKGD + TCK +  ++    D P+   L L+ VD FLEQLTTAT+EDDQLDI+S+   + TP +V+Y+ K++ HDLKINIG K+ L ALH   ++
Sbjct:   46 KGDVYLLMKFLLCKYDQRVYNIREKQLVKLMSRYLQCSHQDLLEDLEKGDHSQTCKSFIMQYKR--DHPRRSSLTLKMVDQFLEQLTTATKEDDQLDIISNFFDLCTPEDVRYVTKIMDHDLKINIGPKFALNALHPKGYE 184          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: UPI001F04B2E9 (DNA ligase 3-like isoform X1 n=3 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04B2E9)

HSP 1 Score: 121 bits (303), Expect = 3.690e-29
Identity = 69/137 (50.36%), Postives = 96/137 (70.07%), Query Frame = 1
Query:   19 DLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAH--FLDQPQLGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAF 423
            D++L  KLLL    KRVYNL+ KQLVKL S+ L  S  +M  DL+KGDV+ T K +F+   +   L Q  L L++VD+FL++++T TRED+Q + LS +    T  ++KY+I+LI HDLKIN GAK+VL+ALH DA+
Sbjct:  219 DIYLVVKLLLPSAVKRVYNLQNKQLVKLFSQILDCSLEEMTSDLDKGDVSETIKNFFETSINKTLLKQSCLTLQEVDAFLDKMSTLTREDEQQNELSKMTRRCTSTDLKYIIRLIKHDLKINAGAKHVLDALHTDAY 355          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: A0A177BC63_9BILA (DNA ligase n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177BC63_9BILA)

HSP 1 Score: 121 bits (303), Expect = 3.760e-29
Identity = 60/143 (41.96%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    4 EGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHF--LDQPQLGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            +G + D++ F KLLL K+D R+Y L  KQ++K++S  LG +  DM  DL+ GDV++T +K+F  ++     ++  L ++++DSFL+++T  T E  Q  I ++IL   T ++V YLI+LI HDL+IN+G+KY LE+L++DA++
Sbjct:  417 DGYKGDVYTFMKLLLVKQDVRIYRLNSKQIIKVISLILGTNLEDMRQDLDNGDVSMTVEKFFDENSSIQPCEKSTLSIKEIDSFLDEMTVNTTEIKQKIIFTNILRRCTKMDVLYLIRLIKHDLRINLGSKYALESLYDDAYE 559          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: UPI0005CE888C (DNA ligase 3 n=1 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CE888C)

HSP 1 Score: 120 bits (302), Expect = 5.170e-29
Identity = 64/143 (44.76%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 QEGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHA--HFLDQPQLGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAF 423
            ++G   D+ L+C+LLL    KR+YNL+ K L+KL +R L      M+ DLE+GDVA T K +++R++   F  + +L L++VD FLE+L+T T+E++Q+    SIL   TP ++K +I+LI HDL+IN G K++LEA+H+DA+
Sbjct:  205 KDGFTGDIVLWCRLLLPGTAKRIYNLQSKALIKLFARILNEDEKLMIEDLEEGDVAQTIKTFYQRNSTIKFNMRSELTLQEVDEFLEKLSTLTKEEEQIYHFKSILRRCTPDDLKMIIRLIKHDLRINAGPKHILEAIHDDAY 347          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: UPI00109BE559 (DNA ligase 3-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE559)

HSP 1 Score: 120 bits (301), Expect = 6.720e-29
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 QEGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHF--LDQPQLGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            Q+    DL+L  KL L   +KRVYNL+ KQLVKL S+ LG  H DM+ DLEKGDVA T   YF  +     L +  L  ++VD FL+ LT  ++E++Q+  L+ I    TP ++KY+I+LI HDL++N GAK+VLEA+H  A++
Sbjct:  228 QDNYTGDLYLLAKLFLPAVNKRVYNLQSKQLVKLFSQILGCDHDDMITDLEKGDVAETISNYFXGNTKCKPLKKSILTNQEVDEFLDSLTMLSKEEEQIRELTKISRKCTPNDLKYIIRLIKHDLRMNTGAKHVLEAIHPSAYE 371          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: UPI001FB396C4 (DNA ligase 3 isoform X1 n=8 Tax=Vespa TaxID=7443 RepID=UPI001FB396C4)

HSP 1 Score: 120 bits (301), Expect = 7.060e-29
Identity = 65/143 (45.45%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    4 EGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHFLDQPQ--LGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            +G + D+ L+CKLLL +  KR+YNL+ KQL+KL SR L      ML DLE+GD+A T + +F+        P+  L +++VD FLE L++ T+ED+Q+    SI+   T  ++K +I+LI HDL+IN G K++L A+HEDAFK
Sbjct:  238 DGFKSDIVLWCKLLLPQAAKRIYNLQSKQLIKLFSRILLQDEESMLEDLEQGDIAETIRLFFESSTAVKASPKSLLTIQEVDQFLEFLSSLTKEDEQIHHFKSIIDKCTGNDLKMIIRLIKHDLRINAGPKHILSAVHEDAFK 380          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: A0A1B6DWL9_9HEMI (DNA ligase n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DWL9_9HEMI)

HSP 1 Score: 119 bits (297), Expect = 9.300e-29
Identity = 65/144 (45.14%), Postives = 99/144 (68.75%), Query Frame = 1
Query:    1 QEGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHFLDQPQ--LGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            ++G + DL L+C+LLL    KR+YNL+ KQLVKL SR    +   ML DLE+GDVA T   +F+++   L   +  L L+QVD+FLE+L+T T+E++Q+   + I +  T  ++K +I+LI HDL+IN G K++LEA+H DA++
Sbjct:  178 KDGFKGDLLLWCRLLLPGAVKRIYNLQSKQLVKLFSRIFNENQEKMLEDLEQGDVAETVGVFFEKNKKLLPAKKSLLTLQQVDNFLEELSTMTKEEEQMQHFTEIANKCTVNDLKIVIRLIKHDLRINAGPKHILEAVHPDAYQ 321          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: UPI001FB4392B (DNA ligase 3 isoform X6 n=1 Tax=Vespa velutina TaxID=202808 RepID=UPI001FB4392B)

HSP 1 Score: 119 bits (299), Expect = 1.280e-28
Identity = 65/142 (45.77%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    7 GCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHFLDQPQ--LGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            G + D+ L+CKLLL +  KR+YNL+ KQL+KL SR L      ML DLE+GD+A T + +F+        P+  L +++VD FLE L++ T+ED+Q+    SI+   T  ++K +I+LI HDL+IN G K++L A+HEDAFK
Sbjct:    3 GFKSDIVLWCKLLLPQAAKRIYNLQSKQLIKLFSRILLQDEESMLEDLEQGDIAETIRLFFESSTAVKASPKSLLTIQEVDQFLEFLSSLTKEDEQIHHFKSIIDKCTGNDLKMIIRLIKHDLRINAGPKHILSAVHEDAFK 144          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: A0A482X3Q5_LAOST (DNA ligase n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482X3Q5_LAOST)

HSP 1 Score: 119 bits (299), Expect = 1.290e-28
Identity = 65/143 (45.45%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    4 EGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHFLDQPQ--LGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            +  + D+ L+C+LLL    KRVYNL+ KQLVKL S+       +ML DLEKGDVA T + +F++ + F+   +  L L++VD FLEQLT  T+ED+QL    SI    T  ++K +++L+ HDL+IN GAK++LE +H DA++
Sbjct:  203 DSFKGDIILWCRLLLPGFIKRVYNLQSKQLVKLFSKLFKQDQDEMLEDLEKGDVAETTRIFFEKSSVFIPSKKSLLTLQEVDEFLEQLTKLTKEDEQLSHFKSIAGRCTSNDLKMIVRLVKHDLRINAGAKHILEGVHPDAYQ 345          
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Match: A0A6P8HI92_ACTTE (DNA ligase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HI92_ACTTE)

HSP 1 Score: 119 bits (299), Expect = 1.300e-28
Identity = 69/143 (48.25%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    4 EGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDLEKGDVALTCKKYFKRHAHF--LDQPQLGLRQVDSFLEQLTTATREDDQLDILSSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK 426
            +G   DLFL  KLLL   +KRVYNL+ KQL+KL S+ LG    +ML DLEKGDVA T   +F++      +++  L  ++VD FL+ LTT ++EDDQ+  L  I    T  ++KY+I+LI HDL++N GAK+VLEA+  DA+K
Sbjct:  225 DGYTGDLFLLAKLLLPGVNKRVYNLQSKQLIKLFSQILGSDQDEMLTDLEKGDVAETISDFFEQSLACKPVNKSTLSNQEVDEFLDNLTTFSKEDDQMRELRKITRKCTVNDLKYIIRLIKHDLRMNTGAKHVLEAIDPDAYK 367          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79696.18699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4M3V5_9EUKA4.730e-3853.19DNA ligase (Fragment) n=1 Tax=Vannella sp. CB-2014... [more]
UPI001F04B2E93.690e-2950.36DNA ligase 3-like isoform X1 n=3 Tax=Xenia sp. Car... [more]
A0A177BC63_9BILA3.760e-2941.96DNA ligase n=1 Tax=Intoshia linei TaxID=1819745 Re... [more]
UPI0005CE888C5.170e-2944.76DNA ligase 3 n=1 Tax=Ceratosolen solmsi marchali T... [more]
UPI00109BE5596.720e-2947.22DNA ligase 3-like n=1 Tax=Exaiptasia diaphana TaxI... [more]
UPI001FB396C47.060e-2945.45DNA ligase 3 isoform X1 n=8 Tax=Vespa TaxID=7443 R... [more]
A0A1B6DWL9_9HEMI9.300e-2945.14DNA ligase n=1 Tax=Clastoptera arizonana TaxID=381... [more]
UPI001FB4392B1.280e-2845.77DNA ligase 3 isoform X6 n=1 Tax=Vespa velutina Tax... [more]
A0A482X3Q5_LAOST1.290e-2845.45DNA ligase n=1 Tax=Laodelphax striatellus TaxID=19... [more]
A0A6P8HI92_ACTTE1.300e-2848.25DNA ligase n=1 Tax=Actinia tenebrosa TaxID=6105 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79696contigM-pyrifera_M_contig79696:233..906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score117.9
Seed ortholog evalue4e-24
Seed eggNOG ortholog121225.PHUM186980-PA
Preferred namelig3
KEGG rclassRC00005
KEGG koko:K10776
KEGG ReactionR00381
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP dependent DNA ligase C terminal region
EggNOG OGs398WS@33154,3BH62@33208,3CZ7J@33213,3E7CC@33342,3SKW6@50557,41WKY@6656,COG1793@1,KOG4437@2759
EC6.5.1.1
COG Functional cat.L
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons3
Model size426
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79696.18699.1prot_M-pyrifera_M_contig79696.18699.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79696 233..906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.416004-CDS-M-pyrifera_M_contig79696:232..4151622816700.416004-CDS-M-pyrifera_M_contig79696:232..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79696 233..415 +
1692278127.5555863-CDS-M-pyrifera_M_contig79696:232..4151692278127.5555863-CDS-M-pyrifera_M_contig79696:232..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79696 233..415 +
1622816700.4266737-CDS-M-pyrifera_M_contig79696:462..6071622816700.4266737-CDS-M-pyrifera_M_contig79696:462..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79696 463..607 +
1692278127.5706747-CDS-M-pyrifera_M_contig79696:462..6071692278127.5706747-CDS-M-pyrifera_M_contig79696:462..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79696 463..607 +
1622816700.43725-CDS-M-pyrifera_M_contig79696:808..9061622816700.43725-CDS-M-pyrifera_M_contig79696:808..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79696 809..906 +
1692278127.5821497-CDS-M-pyrifera_M_contig79696:808..9061692278127.5821497-CDS-M-pyrifera_M_contig79696:808..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79696 809..906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79696.18699.1

>prot_M-pyrifera_M_contig79696.18699.1 ID=prot_M-pyrifera_M_contig79696.18699.1|Name=mRNA_M-pyrifera_M_contig79696.18699.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
QEGCRDDLFLFCKLLLCKEDKRVYNLKKKQLVKLVSRHLGVSHADMLHDL
EKGDVALTCKKYFKRHAHFLDQPQLGLRQVDSFLEQLTTATREDDQLDIL
SSILSMATPIEVKYLIKLIIHDLKINIGAKYVLEALHEDAFK
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mRNA from alignment at M-pyrifera_M_contig79696:233..906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79696.18699.1 ID=mRNA_M-pyrifera_M_contig79696.18699.1|Name=mRNA_M-pyrifera_M_contig79696.18699.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=674bp|location=Sequence derived from alignment at M-pyrifera_M_contig79696:233..906+ (Macrocystis pyrifera P11B4 male)
CAAGAGGGCTGTAGGGATGACCTCTTCTTGTTCTGCAAGCTGCTGCTCTG CAAGGAGGACAAGCGCGTGTACAACCTCAAGAAGAAGCAGCTCGTCAAGC TGGTCAGCAGGCACCTGGGCGTCTCTCATGCCGACATGCTGCACGACCTC GAGAAGGGTGACGTGGCGCTCACCTGCAAGAAGGTAGGCAATCCTCGTCA TCATCCTTGCCGCAGCGCTGACGGATGCAGTACTTTAAGCGGCATGCGCA TTTCCTGGACCAGCCTCAGCTGGGCCTCAGGCAGGTGGACAGTTTCCTCG AGCAGCTAACCACCGCCACCAGGGAGGACGACCAACTCGACATTCTCTCC TCCATTCTCTCTATGGCAACTCCCAGTAAGCGCCTTCCCACTGCATGGAG AGATTTCTCTCAATCCAAACCCCACTGAAGTGGCGAGCGACCCTCTTCTC CCTCTTCTCTCGTCTCTCATTAGGACCCTTCTCTCTCACCTTCCCTTCTC GCTCTCATCCCTGTCGCTTTCTTACGAAGCTCGTGCACGCAATCTCTTGC AACCCTCGAGACTTACAAGCCTACAGTTGAGGTGAAGTACCTCATCAAGC TCATCATCCACGACCTTAAGATTAACATTGGTGCCAAGTACGTGCTCGAG GCTCTGCACGAAGATGCCTTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79696:233..906+

>mRNA_M-pyrifera_M_contig79696.18699.1 ID=mRNA_M-pyrifera_M_contig79696.18699.1|Name=mRNA_M-pyrifera_M_contig79696.18699.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig79696:233..906+ (Macrocystis pyrifera P11B4 male)
CAAGAGGGCTGTAGGGATGACCTCTTCTTGTTCTGCAAGCTGCTGCTCTG
CAAGGAGGACAAGCGCGTGTACAACCTCAAGAAGAAGCAGCTCGTCAAGC
TGGTCAGCAGGCACCTGGGCGTCTCTCATGCCGACATGCTGCACGACCTC
GAGAAGGGTGACGTGGCGCTCACCTGCAAGAAGCAAGAGGGCTGTAGGGA
TGACCTCTTCTTGTTCTGCAAGCTGCTGCTCTGCAAGGAGGACAAGCGCG
TGTACAACCTCAAGAAGAAGCAGCTCGTCAAGCTGGTCAGCAGGCACCTG
GGCGTCTCTCATGCCGACATGCTGCACGACCTCGAGAAGGGTGACGTGGC
GCTCACCTGCAAGAAGTACTTTAAGCGGCATGCGCATTTCCTGGACCAGC
CTCAGCTGGGCCTCAGGCAGGTGGACAGTTTCCTCGAGCAGCTAACCACC
GCCACCAGGGAGGACGACCAACTCGACATTCTCTCCTCCATTCTCTCTAT
GGCAACTCCCATACTTTAAGCGGCATGCGCATTTCCTGGACCAGCCTCAG
CTGGGCCTCAGGCAGGTGGACAGTTTCCTCGAGCAGCTAACCACCGCCAC
CAGGGAGGACGACCAACTCGACATTCTCTCCTCCATTCTCTCTATGGCAA
CTCCCATTGAGGTGAAGTACCTCATCAAGCTCATCATCCACGACCTTAAG
ATTAACATTGGTGCCAAGTACGTGCTCGAGGCTCTGCACGAAGATGCCTT
CAAGTTGAGGTGAAGTACCTCATCAAGCTCATCATCCACGACCTTAAGAT
TAACATTGGTGCCAAGTACGTGCTCGAGGCTCTGCACGAAGATGCCTTCA
AG
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