mRNA_M-pyrifera_M_contig79671.18697.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79671.18697.1
Unique NamemRNA_M-pyrifera_M_contig79671.18697.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79671.18697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79671contigM-pyrifera_M_contig79671:174..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.3252006-CDS-M-pyrifera_M_contig79671:173..4941622816700.3252006-CDS-M-pyrifera_M_contig79671:173..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79671 174..494 +
1692278127.5146654-CDS-M-pyrifera_M_contig79671:173..4941692278127.5146654-CDS-M-pyrifera_M_contig79671:173..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79671 174..494 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.3372808-UTR-M-pyrifera_M_contig79671:494..5231622816700.3372808-UTR-M-pyrifera_M_contig79671:494..523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79671 495..523 +
1692278127.5277572-UTR-M-pyrifera_M_contig79671:494..5231692278127.5277572-UTR-M-pyrifera_M_contig79671:494..523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79671 495..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79671.18697.1prot_M-pyrifera_M_contig79671.18697.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79671 174..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79671.18697.1

>prot_M-pyrifera_M_contig79671.18697.1 ID=prot_M-pyrifera_M_contig79671.18697.1|Name=mRNA_M-pyrifera_M_contig79671.18697.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
SSWRDTCLSTSRPSRNINTHLPTDSLQSFEICDINVWYLSSCSSGPAHIE
HGAHRSAVDVVFGSNISNQNTKIRLFNYQVGDGGVLITYIFRKKKSKQYF
RTYHLV*
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mRNA from alignment at M-pyrifera_M_contig79671:174..523+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79671.18697.1 ID=mRNA_M-pyrifera_M_contig79671.18697.1|Name=mRNA_M-pyrifera_M_contig79671.18697.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=350bp|location=Sequence derived from alignment at M-pyrifera_M_contig79671:174..523+ (Macrocystis pyrifera P11B4 male)
TCCAGCTGGCGAGATACCTGTTTGTCCACTTCACGACCTTCCCGCAACAT
AAATACACACTTGCCCACAGACTCCCTCCAAAGCTTTGAAATATGCGATA
TTAATGTATGGTATTTGTCCAGTTGCTCTTCTGGGCCTGCCCACATCGAA
CACGGAGCGCATCGAAGCGCAGTAGATGTCGTATTCGGCAGTAACATTTC
TAACCAAAACACGAAAATACGACTTTTCAACTACCAGGTGGGGGACGGGG
GAGTACTCATCACGTATATCTTCCGGAAAAAGAAGTCCAAACAATACTTC
CGTACGTATCATCTAGTATGAACGTCATTATCGCACATTTCATACGTACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79671:174..523+

>mRNA_M-pyrifera_M_contig79671.18697.1 ID=mRNA_M-pyrifera_M_contig79671.18697.1|Name=mRNA_M-pyrifera_M_contig79671.18697.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig79671:174..523+ (Macrocystis pyrifera P11B4 male)
TCCAGCTGGCGAGATACCTGTTTGTCCACTTCACGACCTTCCCGCAACAT
AAATACACACTTGCCCACAGACTCCCTCCAAAGCTTTGAAATATGCGATA
TTAATGTATGGTATTTGTCCAGTTGCTCTTCTGGGCCTGCCCACATCGAA
CACGGAGCGCATCGAAGCGCAGTAGATGTCGTATTCGGCAGTAACATTTC
TAACCAAAACACGAAAATACGACTTTTCAACTACCAGGTGGGGGACGGGG
GAGTACTCATCACGTATATCTTCCGGAAAAAGAAGTCCAAACAATACTTC
CGTACGTATCATCTAGTATGATCCAGCTGGCGAGATACCTGTTTGTCCAC
TTCACGACCTTCCCGCAACATAAATACACACTTGCCCACAGACTCCCTCC
AAAGCTTTGAAATATGCGATATTAATGTATGGTATTTGTCCAGTTGCTCT
TCTGGGCCTGCCCACATCGAACACGGAGCGCATCGAAGCGCAGTAGATGT
CGTATTCGGCAGTAACATTTCTAACCAAAACACGAAAATACGACTTTTCA
ACTACCAGGTGGGGGACGGGGGAGTACTCATCACGTATATCTTCCGGAAA
AAGAAGTCCAAACAATACTTCCGTACGTATCATCTAGTATGA
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