mRNA_M-pyrifera_M_contig79630.18691.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig79630.18691.1
Unique Name	mRNA_M-pyrifera_M_contig79630.18691.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: D8LJ59_ECTSI (Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.630e-26
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1

Query:   10 QLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGGSGVVHKKHNFNVKK 186
            +LV+PLPEGV L+VVMDCCHSGSILDLPYSFDA DGALELV+ GGSGV+ KK NFNVKK
Sbjct:  287 ELVMPLPEGVVLSVVMDCCHSGSILDLPYSFDAKDGALELVEAGGSGVMQKKKNFNVKK 345

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: D8LTK1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.920e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 1

Query:   10 QLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGGSGVVHKKHNFNVKKV 189
            +LVLPLPEGV L+VVMDCCHSGSILDLPY+FDAD+GAL+LVD GGS VVHKK  FN+ K+
Sbjct:  267 ELVLPLPEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSAVVHKKAKFNMSKM 326

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: D7G061_ECTSI (Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G061_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.310e-23
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1

Query:   10 QLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGGSGVVHKKHNFNVKKV 189
            +LVLPLPEGV L+VV+DCCHSGSILDLPY+FDAD+GAL+LVD GGSGVV KK  FN+ K+
Sbjct:  272 ELVLPLPEGVVLSVVVDCCHSGSILDLPYTFDADEGALQLVDDGGSGVVLKKAKFNMTKI 331

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: A0A7S4R0W6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R0W6_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 9.230e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1

Query:   13 LVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGGSGVVHKKHNFNVKKV 189
            LV PLPEGVTLT V+DCCHSG+ILDLPY F ADDG+L  V  G    + +  NF+  K+
Sbjct:  418 LVGPLPEGVTLTCVLDCCHSGTILDLPYMFKADDGSLASVADGTFNEMQENPNFDFGKI 476

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: A0A6H5JY89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY89_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.630e-14
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1

Query:   10 QLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGG-SGVVHKKHNFNVKKV 189
            +LV+ LPEGVTLTVVMDCCHSGSILDLPY+  A++G +  V+ G  S  +    +F+  KV
Sbjct:  135 ELVMVLPEGVTLTVVMDCCHSGSILDLPYALKANEGTISAVEAGEVSSTISANPSFDFAKV 195

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: D7G0P1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.650e-13
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1

Query:   10 QLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGG 141
            +LV+ LPEGVTLTVVMDCCHSGSILDLPY+  AD+G +  V+ G
Sbjct:  278 ELVMVLPEGVTLTVVMDCCHSGSILDLPYALKADEGTISAVEAG 321

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: L1I610_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I610_GUITC)

HSP 1 Score: 66.2 bits (160), Expect = 3.340e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:   10 QLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGGSGVVHKKHNFNVKKV 189
            +LV PLP+GV LTV+MDCCHSG+ILDLP+SF A+D   +    G +  +    NFN KK+
Sbjct:  313 ELVAPLPQGVKLTVIMDCCHSGTILDLPFSFTANDQNTQNYTSGMT--LPMNGNFNWKKI 370

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: A0A7S1R4M6_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1R4M6_NEODS)

HSP 1 Score: 63.5 bits (153), Expect = 3.930e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1

Query:   13 LVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGAL-ELVDGGGS 147
            +V PL E V LT VMDCCHSG+ILDLPY F A+DG + EL  GGG+
Sbjct:   64 IVAPLRENVRLTCVMDCCHSGTILDLPYEFSANDGGVNELQSGGGA 109

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BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: A0A7S0MFT1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFT1_9CRYP)

HSP 1 Score: 65.9 bits (159), Expect = 4.170e-11
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1

Query:   10 QLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALE 126
            +LVLPLPEGV LTVVMDCCHSGSILDLPY F A +  ++
Sbjct:  261 ELVLPLPEGVLLTVVMDCCHSGSILDLPYEFTATEANMQ 299

[Close]

BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Match: B7G659_PHATC (Metacaspase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G659_PHATC)

HSP 1 Score: 65.5 bits (158), Expect = 6.020e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 LVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGGSGVVHKKHNFNVKKV 189
            LV P+ +GVT+TV+MDCCHSG++LDLPY F ADD  + +  G  + +  K  + +V +V
Sbjct:  295 LVKPMRQGVTVTVLMDCCHSGTVLDLPYRFSADDSKMRIDQGNANSLFGKLGDMDVAQV 353

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig79630.18691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LJ59_ECTSI	3.630e-26	83.05	Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
D8LTK1_ECTSI	1.920e-24	78.33	Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
D7G061_ECTSI	2.310e-23	76.67	Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
A0A7S4R0W6_9DINO	9.230e-14	59.32	Hypothetical protein n=1 Tax=Alexandrium monilatum...	[more]
A0A6H5JY89_9PHAE	9.630e-14	55.74	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
D7G0P1_ECTSI	3.650e-13	70.45	Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
L1I610_GUITC	3.340e-11	53.33	Uncharacterized protein n=2 Tax=Guillardia theta T...	[more]
A0A7S1R4M6_NEODS	3.930e-11	65.22	Hypothetical protein n=1 Tax=Neobodo designis TaxI...	[more]
A0A7S0MFT1_9CRYP	4.170e-11	74.36	Hypothetical protein n=1 Tax=Cryptomonas curvata T...	[more]
B7G659_PHATC	6.020e-11	47.46	Metacaspase n=2 Tax=Phaeodactylum tricornutum TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig79630	contig	M-pyrifera_M_contig79630:54..242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	105.9
Seed ortholog evalue	6.7e-21
Seed eggNOG ortholog	2880.D8LJ59
Preferred name	MCA5
Hectar predicted targeting category	other localisation
EggNOG free text desc.	cysteine-type peptidase activity
EggNOG OGs	KOG1546@1,KOG1546@2759
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	189
Cds size	183
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816700.0663075-UTR-M-pyrifera_M_contig79630:53..59	1622816700.0663075-UTR-M-pyrifera_M_contig79630:53..59	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig79630 54..59 +
1692278127.368104-UTR-M-pyrifera_M_contig79630:53..59	1692278127.368104-UTR-M-pyrifera_M_contig79630:53..59	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig79630 54..59 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816700.0783708-CDS-M-pyrifera_M_contig79630:59..242	1622816700.0783708-CDS-M-pyrifera_M_contig79630:59..242	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig79630 60..242 +
1692278127.3848495-CDS-M-pyrifera_M_contig79630:59..242	1692278127.3848495-CDS-M-pyrifera_M_contig79630:59..242	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig79630 60..242 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig79630.18691.1	prot_M-pyrifera_M_contig79630.18691.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig79630 60..242 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig79630:54..242+
coding sequence from alignment at M-pyrifera_M_contig79630:54..242+

protein sequence of mRNA_M-pyrifera_M_contig79630.18691.1

>prot_M-pyrifera_M_contig79630.18691.1 ID=prot_M-pyrifera_M_contig79630.18691.1|Name=mRNA_M-pyrifera_M_contig79630.18691.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MQLVLPLPEGVTLTVVMDCCHSGSILDLPYSFDADDGALELVDGGGSGVV
HKKHNFNVKKV

mRNA from alignment at M-pyrifera_M_contig79630:54..242+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig79630.18691.1 ID=mRNA_M-pyrifera_M_contig79630.18691.1|Name=mRNA_M-pyrifera_M_contig79630.18691.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig79630:54..242+ (Macrocystis pyrifera P11B4 male)
TTGTGCATGCAGCTGGTGTTGCCGCTGCCCGAGGGCGTGACTCTGACGGT
GGTCATGGACTGCTGCCACAGCGGGTCGATCCTGGACTTGCCGTACTCGT
TCGACGCGGACGACGGCGCCTTGGAGTTGGTAGACGGCGGAGGCTCCGGA
GTCGTGCACAAGAAGCACAACTTCAACGTGAAAAAGGTC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig79630:54..242+

>mRNA_M-pyrifera_M_contig79630.18691.1 ID=mRNA_M-pyrifera_M_contig79630.18691.1|Name=mRNA_M-pyrifera_M_contig79630.18691.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig79630:54..242+ (Macrocystis pyrifera P11B4 male)
ATGCAGCTGGTGTTGCCGCTGCCCGAGGGCGTGACTCTGACGGTGGTCAT
GGACTGCTGCCACAGCGGGTCGATCCTGGACTTGCCGTACTCGTTCGACG
CGGACGACGGCGCCTTGGAGTTGGTAGACGGCGGAGGCTCCGGAGTCGTG
CACAAGAAGCACAACTTCAACGTGAAAAAGGTCATGCAGCTGGTGTTGCC
GCTGCCCGAGGGCGTGACTCTGACGGTGGTCATGGACTGCTGCCACAGCG
GGTCGATCCTGGACTTGCCGTACTCGTTCGACGCGGACGACGGCGCCTTG
GAGTTGGTAGACGGCGGAGGCTCCGGAGTCGTGCACAAGAAGCACAACTT
CAACGTGAAAAAGGTC