mRNA_M-pyrifera_M_contig79546.18671.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7X6SLI4_9ACTN (Pilus assembly protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6SLI4_9ACTN) HSP 1 Score: 106 bits (264), Expect = 1.290e-25 Identity = 65/172 (37.79%), Postives = 85/172 (49.42%), Query Frame = 1
Query: 4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMA-DDAITMIVIFRADGPSAPVPP----ACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFGDDQTLTSTTILRIEP 504
L++FG IE L FR + D+AR AA G D NAD ++ +S P+ +A+T I IFRA GP + AC TGS CN Y F C P DRFWCP+ +R V+ PPDY+G+YIE+E +TG G T T + R+EP
Sbjct: 28 LIVFGTIEFGLAFRSYLTTTAAARDSARYAATMGKDVNADFFIISDALNSLGPIGGSEAVTTISIFRATGPDSTTASGALAACRTGSVAGL--CNTYRGPDLTTDPYRFACRPTA-ADRFWCPT----SRKVNLSDPPDYVGIYIEVEHEGLTGVLGSSMTFTEEVVTRLEP 192
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A520Y1E1_9ACTN (Pilus assembly protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y1E1_9ACTN) HSP 1 Score: 77.8 bits (190), Expect = 1.280e-14 Identity = 59/170 (34.71%), Postives = 87/170 (51.18%), Query Frame = 1
Query: 1 FLMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPACLTGS---QDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFGDDQTLTSTTILRIE 501
F +IFG IEM+LMF+ +A+ V AAR A+I+ +D NAD +L+ I D+ S + I M++I+ AD +PVP C S Q S CN Y D G P+ ++R ++ IG+YIE + + +TGF D TL++TT+ IE
Sbjct: 41 FAIIFGGIEMTLMFQSNLAIQDVSRSAARVASIARDDANADQLILQEI-DARSGTVNGDIAMVIIYAADTLDSPVPSQCFNASGIAQTSPGNCNAYNAEWVDVAA---GSAPVVTPGTGITDAQRKQWQN---------IGIYIEYDYTFVTGFI-DTTTLSATTVEVIE 196
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7Y2N9H4_9ACTN (Pilus assembly protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9H4_9ACTN) HSP 1 Score: 77.0 bits (188), Expect = 4.800e-14 Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 1 FLMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPACLT-GSQ------------------DSTDQCNRYLPMQFDETL 306
FL++FGI+EM +FR+ + +A+RAA++ G+ ++AD+ ++ + M + + M+V+FRADGPSA VPP+C+T GSQ D T +CN YLP F TL
Sbjct: 28 FLILFGILEMGFLFRNYLTTANTAGEASRAASVFGSAEDADYQIMRSAEHGIAAMGLENLEMMVVFRADGPSAVVPPSCVTSGSQTRTTPAANNTDDETHPAADGTAECNVYLPGDFALTL 148
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A6A0QUP0_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A6A0QUP0_9BACT) HSP 1 Score: 66.2 bits (160), Expect = 3.190e-10 Identity = 55/176 (31.25%), Postives = 82/176 (46.59%), Query Frame = 1
Query: 4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMAD-DAITMIVIFRADGPSAPVPPACLTGSQDSTDQCNRYL--PMQFDETLDSFGCDPLKN-----LDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFF-GDDQTLTSTTILRIEP 504
+++FGI+E ++FR+R+ + AAR A G AD +L+ + D D + + IFRAD P+ TG++ S D N Y P+ F + DP W PS+RV T D GG D +G+ + S ITGF G D+ L ++R+EP
Sbjct: 27 ILVFGIVEYGMLFRERLTIAAATSSAARTGATMGKRDAADFRMLQALEAGLYDQVDSDVLISVDIFRAD-PN--------TGAKIS-DDVNTYAFDPINFPSCHWNPCPDPTSGSYYGFAGAGWIPSDRVTTLDAVGGGL-DVLGIEVTYHHSDITGFIPGVDRDLVERALIRLEP 191
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7Y2D836_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2D836_9ACTN) HSP 1 Score: 64.3 bits (155), Expect = 1.660e-9 Identity = 49/177 (27.68%), Postives = 80/177 (45.20%), Query Frame = 1
Query: 4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPAC--LTGSQDSTDQCNRY-----LPMQFDETLDSFGCDPLKN--LDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFG-DDQTLTSTTILRIEP 504
L++FG++E L +RD + AR + G + AD++VL I ++ + + I +VI+ A +P +C TG S CN Y L + + L + D KN L RFWCP R + GV++E+ +G F + ++ T ++RIEP
Sbjct: 29 LLVFGLLEFGLAWRDSQTVATAARSGARVGSNLGANPEADYNVLLSILAASEAVGVENINYVVIYNAADLDGEIPASCQNATGFIPSAGNCNVYTTADLLALSPSDFLLNVADDDCKNDSLHRFWCPLSRTSVSQYDL----KHFGVHVEITHEATSGVFPIANLEISDTAVMRIEP 201
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7C0WLQ4_9ACTN (Pilus assembly protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7C0WLQ4_9ACTN) HSP 1 Score: 60.8 bits (146), Expect = 3.300e-8 Identity = 49/153 (32.03%), Postives = 72/153 (47.06%), Query Frame = 1
Query: 1 FLMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIV---IFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITG 450
F+++FGI+E L FRDR+ + +AR + G+D AD+ +L + S + A+ ++ ++ ADG PV +C TG D +CNRYL T D C N W S TRDV+ G D I V + +TG
Sbjct: 29 FMLLFGIVEFGLAFRDRLTVTNATQGSARVVSAMGDDPMADYEMLLSLEQSLGILPGQAVGIVRYVDVYLADGNGDPVG-SCSTGGGD---RCNRYLWAPSGGTCDWVPCPDADNGYGSWPWSP--TTRDVALPGL-DVIAVRVTYAHEWVTG 174
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A3E0P7X6_9ACTN (Pilus assembly protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3E0P7X6_9ACTN) HSP 1 Score: 57.0 bits (136), Expect = 6.590e-7 Identity = 51/172 (29.65%), Postives = 80/172 (46.51%), Query Frame = 1
Query: 4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNL---DRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGF--FGDDQTLTSTTILRIEP 504
L++ GI+E+ L F+D + + + + AR A++GND +AD +L+ + + I + I++AD TG+Q +T+ Y D TL + P + P R VS+ P D IGV I L+RS +T F F + TTI R+EP
Sbjct: 26 LVVIGILELGLAFKDYLTVSYLSREGARLGALAGNDADADCTILKGLGAIVTSGDLARINRVEIYKADNS---------TGAQGATNTA--YYQTGQDPTLCNVPALPSDGWTVNSSAYPPLNR--NTSVSATQPLDIIGVRIILDRSWVTNFPPFSGSFQVNETTITRMEP 184
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A6G6WAX4_9ACTN (Pilus assembly protein n=1 Tax=Nocardioides anomalus TaxID=2712223 RepID=A0A6G6WAX4_9ACTN) HSP 1 Score: 55.5 bits (132), Expect = 3.320e-6 Identity = 55/187 (29.41%), Postives = 86/187 (45.99%), Query Frame = 1
Query: 4 LMIFGIIEMSLMFRDRVALD--------------GVGHDAARAAAISGNDQNADHHVLEVIADS----ASPMADDAITMIVIFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFGDDQTLTSTTILRIEPRD 510
+++FGIIEMSL+ RD +A G G +A + Q A V +V AD+ S M D+I I+++RA+ P+P + + + STD C +Y+ +D+ LD F + L W R + V+ +GV + ITGFFG+ L T+++ EP D
Sbjct: 29 ILVFGIIEMSLLMRDVMATSSAVRVGARMASTAAGAGPGTCKAGDTTCTPQKAPR-VAQVAADAIQRAGSAMPKDSIDWILVYRANTSGYPLPDSNKSLTTCSTD-CVKYV---WDKDLDKF-----RYLSGQW--DSRSINACVNDASLMA-VGVAMRSHHDWITGFFGNGVDLEERTVMQFEPLD 202
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7V5C2I4_9ACTN (Pilus assembly protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V5C2I4_9ACTN) HSP 1 Score: 54.7 bits (130), Expect = 5.680e-6 Identity = 54/186 (29.03%), Postives = 76/186 (40.86%), Query Frame = 1
Query: 10 IFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIV---IFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRF-----WCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFF----------GDDQT--LTSTTILRIEPR 507
+FGIIE+ + FRDR+ + AAR G +AD +L+ S S + + + +I IF AD PV C G+ CNRY D T P + D W P+ER + G D +GV + S ITG F G T T ++R+EP+
Sbjct: 25 LFGIIELGIAFRDRLTIGNATQTAARVGTAMGQQPDADLRILQSFEQSLSALPNSGVGIIKYVDIFEADAYGNPVG-GCPGGN------CNRYFYTYVDGTGPLCDWTPCPDPDAGYSGWNWAPNERSILV-----GDLDVMGVRMTYGHSWITGGFLPLPDVACDSGSPPTNCWADTALMRMEPQ 198 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig79546.18671.1 >prot_M-pyrifera_M_contig79546.18671.1 ID=prot_M-pyrifera_M_contig79546.18671.1|Name=mRNA_M-pyrifera_M_contig79546.18671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp MIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSAback to top mRNA from alignment at M-pyrifera_M_contig79546:449..964- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig79546.18671.1 ID=mRNA_M-pyrifera_M_contig79546.18671.1|Name=mRNA_M-pyrifera_M_contig79546.18671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig79546:449..964- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig79546:449..964- >mRNA_M-pyrifera_M_contig79546.18671.1 ID=mRNA_M-pyrifera_M_contig79546.18671.1|Name=mRNA_M-pyrifera_M_contig79546.18671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig79546:449..964- (Macrocystis pyrifera P11B4 male)back to top |