mRNA_M-pyrifera_M_contig79503.18666.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79503.18666.1
Unique NamemRNA_M-pyrifera_M_contig79503.18666.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A2E7KDN8_9PLAN (HPt domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KDN8_9PLAN)

HSP 1 Score: 247 bits (630), Expect = 1.030e-82
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETLKTEVNQSL 387
            MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIR+AIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETLKTEVNQSL
Sbjct:    1 MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRRAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETLKTEVNQSL 129          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A517QCS1_9PLAN (HPt domain-containing protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QCS1_9PLAN)

HSP 1 Score: 192 bits (488), Expect = 4.580e-61
Identity = 96/129 (74.42%), Postives = 115/129 (89.15%), Query Frame = 1
Query:    1 MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETLKTEVNQSL 387
            MTNS S E+ GTWRLI+PE+VLDMA+NDV+FLTELIDLF ALAPEQ+Q+I+QAIDS+DA LL+ VAHA+KG VGNYTQ GPYPLLQSLENDGKSA+L+  + KF +LE+E+  LLTELETLKT+V+QSL
Sbjct:    1 MTNSISTENAGTWRLIEPEKVLDMAVNDVDFLTELIDLFSALAPEQIQEIQQAIDSHDAELLSGVAHAFKGMVGNYTQAGPYPLLQSLENDGKSAELEGCRVKFNSLEREVAELLTELETLKTQVSQSL 129          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A518II95_9PLAN (Hpt domain protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518II95_9PLAN)

HSP 1 Score: 144 bits (362), Expect = 6.960e-42
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    1 MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETL 363
            MT+   A + G WRLI  EQVLDMA+ DVEFL E+I+LF +  P+QM DI+QA+++ND+  LAE AHA KGTVGNYT+  PY LLQ+LENDGKS  L  SQ K+ +LE+EI+ L+ EL+TL
Sbjct:    1 MTSLDLASTDGQWRLINREQVLDMAVGDVEFLAEMIELFFSYVPQQMNDIKQAVENNDSQELAEAAHACKGTVGNYTKLEPYLLLQALENDGKSEQLDESQIKYNSLEKEISQLIAELKTL 121          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A517RLG3_9PLAN (Hpt domain protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RLG3_9PLAN)

HSP 1 Score: 144 bits (362), Expect = 6.960e-42
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETL 363
            MT+  +  +TG WRLI  EQVLDMA+ DVEFL E+I+LF +  P+QM DI+QA++ ND+  LAE AHA KGTVGNYT+  PY LLQSLENDGKS  L  S+ K+ +LE+EI  L+ EL+TL
Sbjct:    1 MTSLETTSTTGQWRLINREQVLDMAVGDVEFLAEMIELFFSYIPQQMNDIQQAVEKNDSQELAEAAHACKGTVGNYTKLEPYLLLQSLENDGKSEQLDESRIKYSSLEKEITQLIVELKTL 121          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A517WSG7_9PLAN (HPt domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WSG7_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 4.550e-37
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   37 WRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETL 363
            WRLI  EQVLDMA+ D EFL+ELI+LF+    +QMQ+I+QAI+ NDA  +AE AHA KGTVGNYT+  PY LLQSLENDGKS  ++ SQ K+  LE+EI  L+ E++ L
Sbjct:   13 WRLINREQVLDMAMGDTEFLSELIELFLGCVSKQMQEIKQAIEENDAQAIAEAAHACKGTVGNYTKLEPYLLLQSLENDGKSNHIEESQGKYCLLEKEITQLILEIKAL 121          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A2E2BYT5_9PLAN (HPt domain-containing protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BYT5_9PLAN)

HSP 1 Score: 119 bits (297), Expect = 4.890e-32
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETLKTEV 375
            M N+++  +TG WRLI  +++LDMA+ D EFL ELI+LF++  PEQM +I  AI+   A  LA  AH +KGTV NYT+  P+ LLQ+LE+DGKS  LQ +   +  LE E+  L++EL  L  +V
Sbjct:    1 MMNTNTTSNTGQWRLIDGDRILDMAMGDTEFLAELIELFMSTVPEQMCEIGLAIERKQAETLAITAHGFKGTVANYTREEPFRLLQTLEDDGKSNQLQDASISYAALENEMQELISELNMLMAQV 125          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A2E7DAZ2_9PLAN (HPt domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7DAZ2_9PLAN)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-10
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   64 LDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINAL 342
            L+ +I D++ L +L ++F+ L PEQ+ ++RQ+++S DAG L   AH  KG+V +   T     L  LE  G+  +L  ++  +Q LE EI  L
Sbjct:   78 LEPSIEDLDLLKDLAEMFLDLFPEQLAEVRQSVESGDAGELRRSAHRLKGSVSSLGSTVAAQTLVELEVMGRDDELNQAERVYQRLEAEIRRL 170          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A2D6A130_9PROT (Histidine kinase n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=A0A2D6A130_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 1.060e-9
Identity = 36/104 (34.62%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   61 VLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETLKTE 372
            +L+    + E L+E+    +   P+ MQ I  AI+ +DA  L + AHA KGTV N+         ++LEN G+S +L  + SK  TL+ +++ L+ E+E L T+
Sbjct:  477 ILEQVAGEEEILSEIAQECLNCIPQYMQAIEAAINCSDADALMKSAHALKGTVANFHIESVVDAAKTLENLGRSNELDDALSKLTTLQSQVDQLIPEIEKLITQ 580          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A3N5YWE3_9BACT (Response regulator (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5YWE3_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 4.520e-9
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   88 EFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELETLKTEVNQ 381
            + L E+IDLF+A  P  + + R+A+  +DA  LA  AHA KG++G + QTG Y   + LE+  ++ +       F  L+ E+  L  +L+ +   + Q
Sbjct:  190 KLLAEVIDLFLADTPRILDEARRALARHDAAALAASAHALKGSIGLFAQTGAYDAARRLESAARAGEQAGIDETFAELDGEVKQLSEDLQAVSRSLRQ 287          
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Match: A0A518E3R2_9BACT (Signal transduction histidine-protein kinase BarA n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518E3R2_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 4.660e-8
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 1
Query:   46 IQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDIRQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQASQSKFQTLEQEINALLTELET 360
            IQ +  L+    D   L ++ D ++   PEQ+  +RQAI++ DA LL   AH  KG++  Y     Y +   LE  GK+A+ + ++    TL QE+  +  E+E+
Sbjct:  954 IQWKDALNNVNGDDPLLKDVSDAYLQEYPEQLLQMRQAINNRDAKLLQRAAHTLKGSMRFYGVHRAYEIAYDLEKMGKAAEFEGAEEPLATLTQELAVIRREVES 1058          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79503.18666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A2E7KDN8_9PLAN1.030e-8299.22HPt domain-containing protein n=6 Tax=Gimesia TaxI... [more]
A0A517QCS1_9PLAN4.580e-6174.42HPt domain-containing protein n=3 Tax=Gimesia pana... [more]
A0A518II95_9PLAN6.960e-4259.50Hpt domain protein n=1 Tax=Gimesia fumaroli TaxID=... [more]
A0A517RLG3_9PLAN6.960e-4259.50Hpt domain protein n=1 Tax=Gimesia alba TaxID=2527... [more]
A0A517WSG7_9PLAN4.550e-3760.55HPt domain-containing protein n=2 Tax=Gimesia aqua... [more]
A0A2E2BYT5_9PLAN4.890e-3248.00HPt domain-containing protein n=3 Tax=Planctomycet... [more]
A0A2E7DAZ2_9PLAN1.490e-1036.56HPt domain-containing protein n=1 Tax=Planctomycet... [more]
A0A2D6A130_9PROT1.060e-934.62Histidine kinase n=1 Tax=Bdellovibrionaceae bacter... [more]
A0A3N5YWE3_9BACT4.520e-932.65Response regulator (Fragment) n=1 Tax=Acidobacteri... [more]
A0A518E3R2_9BACT4.660e-832.38Signal transduction histidine-protein kinase BarA ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79503contigM-pyrifera_M_contig79503:182..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score121.3
Seed ortholog evalue3.3e-25
Seed eggNOG ortholog344747.PM8797T_19131
KEGG koko:K20976
KEGG Pathwayko02020,ko02025,map02020,map02025
KEGG ModuleM00820
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase
EggNOG OGsCOG2198@1,COG2198@2
COG Functional cat.T
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02022
Exons1
Model size390
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.6529515-CDS-M-pyrifera_M_contig79503:181..5711622816698.6529515-CDS-M-pyrifera_M_contig79503:181..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79503 182..571 -
1692278126.4501224-CDS-M-pyrifera_M_contig79503:181..5711692278126.4501224-CDS-M-pyrifera_M_contig79503:181..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79503 182..571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79503.18666.1prot_M-pyrifera_M_contig79503.18666.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79503 182..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79503.18666.1

>prot_M-pyrifera_M_contig79503.18666.1 ID=prot_M-pyrifera_M_contig79503.18666.1|Name=mRNA_M-pyrifera_M_contig79503.18666.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MTNSSSAESTGTWRLIQPEQVLDMAINDVEFLTELIDLFVALAPEQMQDI
RQAIDSNDAGLLAEVAHAYKGTVGNYTQTGPYPLLQSLENDGKSADLQAS
QSKFQTLEQEINALLTELETLKTEVNQSL*
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mRNA from alignment at M-pyrifera_M_contig79503:182..571-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79503.18666.1 ID=mRNA_M-pyrifera_M_contig79503.18666.1|Name=mRNA_M-pyrifera_M_contig79503.18666.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig79503:182..571- (Macrocystis pyrifera P11B4 male)
ATGACGAATTCAAGTTCAGCTGAATCTACAGGTACCTGGCGATTAATCCA ACCAGAACAGGTTCTGGATATGGCAATCAACGATGTTGAATTCCTGACCG AACTGATTGATCTGTTTGTGGCCCTGGCTCCGGAACAAATGCAGGACATC CGTCAGGCAATCGACAGTAATGATGCAGGTCTGCTCGCGGAAGTCGCCCA CGCCTACAAGGGAACCGTCGGAAACTACACTCAGACCGGTCCTTATCCAC TGCTGCAGTCGCTGGAAAATGACGGCAAATCGGCAGACCTCCAGGCGAGC CAGAGCAAGTTTCAAACACTAGAACAAGAGATCAATGCCCTGCTGACCGA ATTAGAGACCTTAAAAACTGAGGTCAATCAGTCCCTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79503:182..571-

>mRNA_M-pyrifera_M_contig79503.18666.1 ID=mRNA_M-pyrifera_M_contig79503.18666.1|Name=mRNA_M-pyrifera_M_contig79503.18666.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig79503:182..571- (Macrocystis pyrifera P11B4 male)
ATGACGAATTCAAGTTCAGCTGAATCTACAGGTACCTGGCGATTAATCCA
ACCAGAACAGGTTCTGGATATGGCAATCAACGATGTTGAATTCCTGACCG
AACTGATTGATCTGTTTGTGGCCCTGGCTCCGGAACAAATGCAGGACATC
CGTCAGGCAATCGACAGTAATGATGCAGGTCTGCTCGCGGAAGTCGCCCA
CGCCTACAAGGGAACCGTCGGAAACTACACTCAGACCGGTCCTTATCCAC
TGCTGCAGTCGCTGGAAAATGACGGCAAATCGGCAGACCTCCAGGCGAGC
CAGAGCAAGTTTCAAACACTAGAACAAGAGATCAATGCCCTGCTGACCGA
ATTAGAGACCTTAAAAACTGAGGTCAATCAGTCCCTGTAAATGACGAATT
CAAGTTCAGCTGAATCTACAGGTACCTGGCGATTAATCCAACCAGAACAG
GTTCTGGATATGGCAATCAACGATGTTGAATTCCTGACCGAACTGATTGA
TCTGTTTGTGGCCCTGGCTCCGGAACAAATGCAGGACATCCGTCAGGCAA
TCGACAGTAATGATGCAGGTCTGCTCGCGGAAGTCGCCCACGCCTACAAG
GGAACCGTCGGAAACTACACTCAGACCGGTCCTTATCCACTGCTGCAGTC
GCTGGAAAATGACGGCAAATCGGCAGACCTCCAGGCGAGCCAGAGCAAGT
TTCAAACACTAGAACAAGAGATCAATGCCCTGCTGACCGAATTAGAGACC
TTAAAAACTGAGGTCAATCAGTCCCTGTAA
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