mRNA_M-pyrifera_M_contig79494.18660.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79494.18660.1
Unique NamemRNA_M-pyrifera_M_contig79494.18660.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79494.18660.1 vs. uniprot
Match: A0A367JB58_RHIAZ (MICOS complex subunit MIC60 n=3 Tax=Rhizopus TaxID=4842 RepID=A0A367JB58_RHIAZ)

HSP 1 Score: 52.4 bits (124), Expect = 4.930e-5
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:   52 GVATRRQLALRFEVVAREVERAALVPAGSGAVGELLASAVSALLWSESG-AQGAEGAAVSPKARKVLRTVHEARTAVAADDLHQAVQSLQAIQGYAAEPVKSWCQDATDRILVEQAIRVAK 411
            GV T  +LA+RFE VA+E+ R ALVP   G    +++S +S L++ +SG  +G +  ++  +A   L+           D+L  A + L  + G+  +  + W Q A   + V+QA+ VA+
Sbjct:  456 GVNTVSELAVRFEEVAQEIRRVALVPEDGGFGSHIISSLMSYLMFKKSGLVEGDDVESILARAEYYLKR----------DNLEYATRELNQLGGWPKKLARDWIQSARRHLEVKQALEVAE 566
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79494.18660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A367JB58_RHIAZ4.930e-531.40MICOS complex subunit MIC60 n=3 Tax=Rhizopus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79494contigM-pyrifera_M_contig79494:410..856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog42099.EPrPV00000018597
Preferred nameMIC60
KEGG koko:K17785
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0030061,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044284,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0061617,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1990542
EggNOG free text desc.Source PGD
EggNOG OGs1MB5T@121069,KOG1854@1,KOG1854@2759
COG Functional cat.M
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.432044-CDS-M-pyrifera_M_contig79494:409..8561622816698.432044-CDS-M-pyrifera_M_contig79494:409..856Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79494 410..856 -
1692278126.341981-CDS-M-pyrifera_M_contig79494:409..8561692278126.341981-CDS-M-pyrifera_M_contig79494:409..856Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79494 410..856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79494.18660.1prot_M-pyrifera_M_contig79494.18660.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79494 410..856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79494.18660.1

>prot_M-pyrifera_M_contig79494.18660.1 ID=prot_M-pyrifera_M_contig79494.18660.1|Name=mRNA_M-pyrifera_M_contig79494.18660.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
VIASAVESLPDRVHMAGGVATRRQLALRFEVVAREVERAALVPAGSGAVG
ELLASAVSALLWSESGAQGAEGAAVSPKARKVLRTVHEARTAVAADDLHQ
AVQSLQAIQGYAAEPVKSWCQDATDRILVEQAIRVAKAATALETAALY*
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mRNA from alignment at M-pyrifera_M_contig79494:410..856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79494.18660.1 ID=mRNA_M-pyrifera_M_contig79494.18660.1|Name=mRNA_M-pyrifera_M_contig79494.18660.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig79494:410..856- (Macrocystis pyrifera P11B4 male)
GTGATCGCGAGTGCGGTGGAGTCTTTGCCGGATCGCGTGCATATGGCAGG
GGGTGTGGCGACGAGGCGCCAGTTGGCGCTGCGGTTCGAGGTGGTGGCGA
GGGAGGTGGAGCGTGCGGCGCTGGTGCCAGCTGGGAGCGGGGCCGTAGGG
GAATTGTTGGCGAGCGCAGTGTCGGCTTTGCTGTGGAGCGAGAGCGGGGC
ACAAGGCGCAGAGGGAGCGGCAGTGTCCCCAAAGGCCAGGAAAGTGCTCC
GGACCGTCCACGAGGCCAGGACTGCGGTCGCAGCTGACGACCTCCACCAG
GCCGTGCAGAGCCTGCAGGCCATCCAAGGGTACGCAGCGGAGCCAGTCAA
GTCCTGGTGCCAGGATGCCACCGACAGGATCCTCGTCGAACAGGCAATCA
GAGTCGCCAAAGCCGCAACCGCTCTTGAAACCGCGGCGCTCTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79494:410..856-

>mRNA_M-pyrifera_M_contig79494.18660.1 ID=mRNA_M-pyrifera_M_contig79494.18660.1|Name=mRNA_M-pyrifera_M_contig79494.18660.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig79494:410..856- (Macrocystis pyrifera P11B4 male)
GTGATCGCGAGTGCGGTGGAGTCTTTGCCGGATCGCGTGCATATGGCAGG
GGGTGTGGCGACGAGGCGCCAGTTGGCGCTGCGGTTCGAGGTGGTGGCGA
GGGAGGTGGAGCGTGCGGCGCTGGTGCCAGCTGGGAGCGGGGCCGTAGGG
GAATTGTTGGCGAGCGCAGTGTCGGCTTTGCTGTGGAGCGAGAGCGGGGC
ACAAGGCGCAGAGGGAGCGGCAGTGTCCCCAAAGGCCAGGAAAGTGCTCC
GGACCGTCCACGAGGCCAGGACTGCGGTCGCAGCTGACGACCTCCACCAG
GCCGTGCAGAGCCTGCAGGCCATCCAAGGGTACGCAGCGGAGCCAGTCAA
GTCCTGGTGCCAGGATGCCACCGACAGGATCCTCGTCGAACAGGCAATCA
GAGTCGCCAAAGCCGCAACCGCTCTTGAAACCGCGGCGCTCTACTGAGTG
ATCGCGAGTGCGGTGGAGTCTTTGCCGGATCGCGTGCATATGGCAGGGGG
TGTGGCGACGAGGCGCCAGTTGGCGCTGCGGTTCGAGGTGGTGGCGAGGG
AGGTGGAGCGTGCGGCGCTGGTGCCAGCTGGGAGCGGGGCCGTAGGGGAA
TTGTTGGCGAGCGCAGTGTCGGCTTTGCTGTGGAGCGAGAGCGGGGCACA
AGGCGCAGAGGGAGCGGCAGTGTCCCCAAAGGCCAGGAAAGTGCTCCGGA
CCGTCCACGAGGCCAGGACTGCGGTCGCAGCTGACGACCTCCACCAGGCC
GTGCAGAGCCTGCAGGCCATCCAAGGGTACGCAGCGGAGCCAGTCAAGTC
CTGGTGCCAGGATGCCACCGACAGGATCCTCGTCGAACAGGCAATCAGAG
TCGCCAAAGCCGCAACCGCTCTTGAAACCGCGGCGCTCTACTGA
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