mRNA_M-pyrifera_M_contig79493.18659.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79493.18659.1
Unique NamemRNA_M-pyrifera_M_contig79493.18659.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79493.18659.1 vs. uniprot
Match: A0A7C2AKU8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2AKU8_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 3.720e-19
Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 1 
Query:   43 LLTPSCSEAPPPPATALPALPEFELRDVVAARIAALEAELAAE-PVPT-DPAPDDLAEQVAGLVTFLTSAKGSLVDAAFEDVQRLGPAAVEPLVALYREELARAAEASETERRRSILRLLGDLDTPASAAFLAEVTSTERSALLRSTASWKLAGLGQDFVVPELLKQLTYEKDPDAVVWLVRALAAHGNYSGLSALNVLVA 639
            LL  SC    P PA   P  P    RDVVAARIA L+A+LA + PV   DP      E++ GL++   S+   +  A  E+   LG  A++ L A+  +    AAE      R   +  LG L +P SA  L  +  +      R+ A+W+LA   QD+VVP +L +L YE D D V+WL + LA +GN +GL AL+V+ A
Sbjct:   16 LLFGSCGGDAPHPA---PPAPPPPTRDVVAARIAELDADLAEDSPVEAIDP------ERIRGLISIALSSDRGMRLAGREEAAGLGDGAIDELEAILADSTVAAAE------REVAIEFLGLLASPRSAESLLTLLESSDEPWQRAHAAWRLASSDQDWVVPRMLLRLKYETDFDTVIWLAKTLAHYGNDAGLGALSVIAA 201
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79493.18659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C2AKU8_9BACT3.720e-1938.31Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79493contigM-pyrifera_M_contig79493:19..660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size642
Cds size642
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.4022217-CDS-M-pyrifera_M_contig79493:18..6601622816698.4022217-CDS-M-pyrifera_M_contig79493:18..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79493 19..660 -
1692278126.3253844-CDS-M-pyrifera_M_contig79493:18..6601692278126.3253844-CDS-M-pyrifera_M_contig79493:18..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79493 19..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79493.18659.1prot_M-pyrifera_M_contig79493.18659.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79493 19..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79493.18659.1

>prot_M-pyrifera_M_contig79493.18659.1 ID=prot_M-pyrifera_M_contig79493.18659.1|Name=mRNA_M-pyrifera_M_contig79493.18659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=214bp
MKACSTLALTLALGLLTPSCSEAPPPPATALPALPEFELRDVVAARIAAL
EAELAAEPVPTDPAPDDLAEQVAGLVTFLTSAKGSLVDAAFEDVQRLGPA
AVEPLVALYREELARAAEASETERRRSILRLLGDLDTPASAAFLAEVTST
ERSALLRSTASWKLAGLGQDFVVPELLKQLTYEKDPDAVVWLVRALAAHG
NYSGLSALNVLVAR
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mRNA from alignment at M-pyrifera_M_contig79493:19..660-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79493.18659.1 ID=mRNA_M-pyrifera_M_contig79493.18659.1|Name=mRNA_M-pyrifera_M_contig79493.18659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig79493:19..660- (Macrocystis pyrifera P11B4 male)
ATGAAGGCCTGCTCCACCTTGGCGCTCACGCTCGCCCTCGGCCTCCTCAC
GCCGAGCTGCTCCGAAGCGCCGCCGCCGCCCGCCACCGCGCTGCCGGCGC
TGCCCGAGTTCGAGCTGCGTGACGTCGTCGCGGCGCGCATCGCCGCGCTC
GAGGCCGAGCTCGCCGCCGAGCCGGTCCCGACCGACCCTGCGCCGGACGA
CCTCGCGGAACAGGTCGCCGGCCTCGTGACCTTCCTCACCAGCGCCAAGG
GCAGCTTGGTCGATGCCGCCTTCGAAGACGTCCAGCGCCTCGGGCCGGCC
GCGGTCGAGCCCTTGGTCGCGCTCTACCGCGAAGAGCTCGCGCGCGCGGC
CGAGGCCTCCGAGACCGAGCGGCGGCGCTCGATCCTGCGGCTCCTCGGCG
ACCTCGACACGCCCGCGTCCGCCGCCTTCCTCGCCGAGGTCACGAGCACC
GAGCGCAGCGCGCTGCTGCGCTCGACCGCTTCGTGGAAGCTGGCCGGGCT
CGGGCAGGACTTCGTCGTGCCCGAGCTGCTCAAGCAGCTGACCTACGAGA
AGGACCCCGATGCGGTCGTCTGGCTCGTGCGCGCGCTCGCCGCCCACGGC
AACTACTCCGGGCTCAGCGCCCTGAACGTGCTGGTCGCGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79493:19..660-

>mRNA_M-pyrifera_M_contig79493.18659.1 ID=mRNA_M-pyrifera_M_contig79493.18659.1|Name=mRNA_M-pyrifera_M_contig79493.18659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1284bp|location=Sequence derived from alignment at M-pyrifera_M_contig79493:19..660- (Macrocystis pyrifera P11B4 male)
ATGAAGGCCTGCTCCACCTTGGCGCTCACGCTCGCCCTCGGCCTCCTCAC
GCCGAGCTGCTCCGAAGCGCCGCCGCCGCCCGCCACCGCGCTGCCGGCGC
TGCCCGAGTTCGAGCTGCGTGACGTCGTCGCGGCGCGCATCGCCGCGCTC
GAGGCCGAGCTCGCCGCCGAGCCGGTCCCGACCGACCCTGCGCCGGACGA
CCTCGCGGAACAGGTCGCCGGCCTCGTGACCTTCCTCACCAGCGCCAAGG
GCAGCTTGGTCGATGCCGCCTTCGAAGACGTCCAGCGCCTCGGGCCGGCC
GCGGTCGAGCCCTTGGTCGCGCTCTACCGCGAAGAGCTCGCGCGCGCGGC
CGAGGCCTCCGAGACCGAGCGGCGGCGCTCGATCCTGCGGCTCCTCGGCG
ACCTCGACACGCCCGCGTCCGCCGCCTTCCTCGCCGAGGTCACGAGCACC
GAGCGCAGCGCGCTGCTGCGCTCGACCGCTTCGTGGAAGCTGGCCGGGCT
CGGGCAGGACTTCGTCGTGCCCGAGCTGCTCAAGCAGCTGACCTACGAGA
AGGACCCCGATGCGGTCGTCTGGCTCGTGCGCGCGCTCGCCGCCCACGGC
AACTACTCCGGGCTCAGCGCCCTGAACGTGCTGGTCGCGCGCATGAAGGC
CTGCTCCACCTTGGCGCTCACGCTCGCCCTCGGCCTCCTCACGCCGAGCT
GCTCCGAAGCGCCGCCGCCGCCCGCCACCGCGCTGCCGGCGCTGCCCGAG
TTCGAGCTGCGTGACGTCGTCGCGGCGCGCATCGCCGCGCTCGAGGCCGA
GCTCGCCGCCGAGCCGGTCCCGACCGACCCTGCGCCGGACGACCTCGCGG
AACAGGTCGCCGGCCTCGTGACCTTCCTCACCAGCGCCAAGGGCAGCTTG
GTCGATGCCGCCTTCGAAGACGTCCAGCGCCTCGGGCCGGCCGCGGTCGA
GCCCTTGGTCGCGCTCTACCGCGAAGAGCTCGCGCGCGCGGCCGAGGCCT
CCGAGACCGAGCGGCGGCGCTCGATCCTGCGGCTCCTCGGCGACCTCGAC
ACGCCCGCGTCCGCCGCCTTCCTCGCCGAGGTCACGAGCACCGAGCGCAG
CGCGCTGCTGCGCTCGACCGCTTCGTGGAAGCTGGCCGGGCTCGGGCAGG
ACTTCGTCGTGCCCGAGCTGCTCAAGCAGCTGACCTACGAGAAGGACCCC
GATGCGGTCGTCTGGCTCGTGCGCGCGCTCGCCGCCCACGGCAACTACTC
CGGGCTCAGCGCCCTGAACGTGCTGGTCGCGCGC
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