mRNA_M-pyrifera_M_contig79429.18646.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79429.18646.1
Unique NamemRNA_M-pyrifera_M_contig79429.18646.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79429.18646.1 vs. uniprot
Match: A0A5M9NP68_9VIBR (GGDEF domain-containing protein n=6 Tax=Vibrio TaxID=662 RepID=A0A5M9NP68_9VIBR)

HSP 1 Score: 65.5 bits (158), Expect = 3.720e-8
Identity = 58/220 (26.36%), Postives = 103/220 (46.82%), Query Frame = 1 
Query:  181 HHLNRSQALALELSDTTYLVLSKKW------------LGSILRYRSDYAGALEVYKEALTL-AEIMNFDDEIPKITQNIAMIFLDQNQHDLAIEYYKKSIAKIKDL-YTKSVCMTNLGL--AYLRSQQYDLALSTFMNSLDVCQMSNNVSCEISPIILITQTYLYQDKN--NEALSYGLATLEKRQAFVSKEDLVNIYNQIGLIYLNLEDFEPAHEYFIQ 786
            HH       AL     TYL L K +            +G++L+    Y  + +  KEAL L A+  N      ++  ++A ++L+Q+Q DLAI +++K+   + +  +   + +T+LGL  AY ++Q YDLA S  + SL+      N    I+  + ++   +++DK    EAL+Y    L   +     +       Q+  I+  L D++ A  Y+ Q
Sbjct:  201 HHFRSDYHTALN----TYLTLIKVFPKGHDISGVYNDIGNLLKELKQYEKSAQYLKEALALRADASNLMKA--QVHHSLADLYLNQSQSDLAIHHFEKAHRLLSESSHNYGIALTSLGLGKAYTQTQDYDLARSYLIESLEAANGLTNDGIRINAYLAVSD--MFEDKKLMAEALNYAEQALRLAEQVSRHKYTAQALLQLSEIHKALNDYQQAFIYYQQ 412
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BLAST of mRNA_M-pyrifera_M_contig79429.18646.1 vs. uniprot
Match: UPI001CF1F710 (tetratricopeptide repeat protein n=1 Tax=Clostridium sp. CS001 TaxID=2880648 RepID=UPI001CF1F710)

HSP 1 Score: 58.2 bits (139), Expect = 7.250e-6
Identity = 49/193 (25.39%), Postives = 83/193 (43.01%), Query Frame = 1 
Query:  256 LGSILRYRSDYAGALEVYKEALTLAEIMNFDDEIPKITQNIAMIFLDQNQHDLAIEYY---KKSIAKIKDLYTKSVCMTNLGLAYLRSQQYDLALSTFMNSLDVCQMSNNVSCEISPIILITQTYLYQDKNNEALSYGLATLEKRQAFVSKEDLVNIYNQIGLIYLNLEDFEPAHEYFIQCLELKDHIPAQKL 825
            LG     + DY  A   Y  ++ + + +N  + IP +  NIA+      Q+  A+ ++   ++     KD   +     N+   Y++  + DLAL T    L +     +    I+  IL    Y  + + N A+    + L K     +   L  IYN +GL YLN +DF  + EYF +  +L+  I    L
Sbjct:  122 LGEYYFNKKDYDEAFFNYNNSIDIFKNINQSETIPYLYLNIALCKAMLLQYTEALSFFYLSERYSIMYKDKLIEKRAKYNIAKCYIKLNKIDLALETIRKFLTLFSKEEDFEKYININILKANCYEVKKEFNTAIDIYDSLLSKN-INCNNPILGYIYNNLGLAYLNKDDFNNSLEYFDKAEQLRIRIDPDNL 313
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BLAST of mRNA_M-pyrifera_M_contig79429.18646.1 vs. uniprot
Match: A0A1G6QAC8_NIADE (Signal transduction histidine kinase n=1 Tax=Niabella drilacis (strain DSM 25811 / CCM 8410 / LMG 26954 / E90) TaxID=1285928 RepID=A0A1G6QAC8_NIADE)

HSP 1 Score: 58.2 bits (139), Expect = 9.080e-6
Identity = 44/180 (24.44%), Postives = 87/180 (48.33%), Query Frame = 1 
Query:   49 DTSLLIAKSALEHSLAIDNQKGILISHFSIGKASYHLSTMQEAAHHLNRSQALALELSDTTYLVLSKKWLGSILRYRSDYAGALEVYKEALTLAEIMNFDDEIPKITQNIAMIFLDQNQHDLAIEYYKKSIAKIKDLYTKSVCMTNL---GLAYLRSQQYDLALSTFMNSLDVCQMSNNV 579
            + S   A  ++  +  +  +KGI  +H   G+   + +    A      + A    +++   ++ + + +G++   +S++  AL  Y +AL +AE    +D I +I QNIA ++LDQ      ++Y KKS A   +       +T+L   GLAYL  +    A + F  +L++ + + N+
Sbjct:   59 EKSTQFANQSMAAAKTLGWKKGIAANHILSGELLLNGNKYDSALLQFKAAYATNTAINNIPGIISALQSIGNVYYGQSNHNQALPYYLKALEMAEKAEDNDRICRINQNIAGVYLDQENSTKMLQYAKKSYAAAINSKIPENTITSLESIGLAYLLGKDSISAGNYFSKALELNESTGNI 238
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BLAST of mRNA_M-pyrifera_M_contig79429.18646.1 vs. uniprot
Match: A0A084JB34_9CLOT (HTH cro/C1-type domain-containing protein n=1 Tax=Clostridium sulfidigenes TaxID=318464 RepID=A0A084JB34_9CLOT)

HSP 1 Score: 55.5 bits (132), Expect = 5.460e-5
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:  475 CMTNLGLAYLRSQQYDLALSTFMNSLDVCQMSNNVSCEISPIILITQTYLYQDKNNEALSYGLATLEKRQAFVSKEDLVNIYNQIGLIYLNLEDFEPAHEYFIQCLELK 801
            C+ N+ L+Y +S +YD AL      L++C  ++N    IS IIL    YL +   + AL+     L      +    L  IYN IGLIY  L + + + ++F + +  K
Sbjct:  198 CLYNIALSYKKSSEYDNALIYIDELLNLCNTNHNFDLYISTIILKCNCYLNKKDYSIALTIYFDILNNFSENIGVH-LGMIYNNIGLIYCELNEIDKSIDFFSRSINFK 305
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BLAST of mRNA_M-pyrifera_M_contig79429.18646.1 vs. uniprot
Match: UPI001C10E2AB (tetratricopeptide repeat protein n=1 Tax=Tissierella carlieri TaxID=689904 RepID=UPI001C10E2AB)

HSP 1 Score: 55.1 bits (131), Expect = 7.440e-5
Identity = 56/219 (25.57%), Postives = 98/219 (44.75%), Query Frame = 1 
Query:  226 TTYLVLSKKWLGSILRYRSDYAGALEVYKEALTLAEIMNFDDE-IPKITQNIAMIFLDQNQHDLAIEYYKKSIAKIK----DLYTKSVCMTNLGLAYLRSQQYDLALSTFMNSLDVCQMSNNVSCEISPIILITQTYLYQDKNNEALSYGLATLEKRQAF-VSKEDLVNIYNQIGLIYLNLEDFEPAHEYFIQCLEL-KDHIPAQKLPYVYANLALSSE 861
            + YL+  K  LG+   YR  Y  A+ +++   TL  I N  ++ +  I  N A+ +     +  +++     +  I+    DL+ ++  +   GL YL   +Y+ ALS++ N+L V   +     +      I +TY   +  N A  Y  A LE       S      I NQ+ + Y NL +F+ A +Y+ + L+  K++I      Y+  NL    E
Sbjct:  168 SNYLLTIK--LGTNYIYRGKYQDAVSIFQN--TLINIDNIPEKYLIYIYYNYALAYFRLKMYSSSLKVISDLLRYIERKDYDLWRRTYNLQ--GLCYLEKGEYESALSSYNNALQVLTFTGYSDLKYLIYGNIAETYTKVNDENRAYKYVEAVLEDIDKLDKSSYSYSQICNQLAISYENLGEFKKAEKYYKESLKYAKENIQQD---YILKNLTALME 377
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79429.18646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5M9NP68_9VIBR3.720e-826.36GGDEF domain-containing protein n=6 Tax=Vibrio Tax... [more]
UPI001CF1F7107.250e-625.39tetratricopeptide repeat protein n=1 Tax=Clostridi... [more]
A0A1G6QAC8_NIADE9.080e-624.44Signal transduction histidine kinase n=1 Tax=Niabe... [more]
A0A084JB34_9CLOT5.460e-531.19HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
UPI001C10E2AB7.440e-525.57tetratricopeptide repeat protein n=1 Tax=Tissierel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79429contigM-pyrifera_M_contig79429:13..942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue1e-08
Seed eggNOG ortholog575788.VS_1390
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs1NW5T@1224,1SPKH@1236,1XT8U@135623,COG0457@1,COG0457@2,COG2199@1,COG2199@2
COG Functional cat.T
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
Exons1
Model size930
Cds size930
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.8051996-CDS-M-pyrifera_M_contig79429:12..9421622816697.8051996-CDS-M-pyrifera_M_contig79429:12..942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79429 13..942 +
1692278125.9420502-CDS-M-pyrifera_M_contig79429:12..9421692278125.9420502-CDS-M-pyrifera_M_contig79429:12..942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79429 13..942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79429.18646.1prot_M-pyrifera_M_contig79429.18646.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79429 13..942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79429.18646.1

>prot_M-pyrifera_M_contig79429.18646.1 ID=prot_M-pyrifera_M_contig79429.18646.1|Name=mRNA_M-pyrifera_M_contig79429.18646.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=310bp
LDSLFLRFQDHVNSSPDTSLLIAKSALEHSLAIDNQKGILISHFSIGKAS
YHLSTMQEAAHHLNRSQALALELSDTTYLVLSKKWLGSILRYRSDYAGAL
EVYKEALTLAEIMNFDDEIPKITQNIAMIFLDQNQHDLAIEYYKKSIAKI
KDLYTKSVCMTNLGLAYLRSQQYDLALSTFMNSLDVCQMSNNVSCEISPI
ILITQTYLYQDKNNEALSYGLATLEKRQAFVSKEDLVNIYNQIGLIYLNL
EDFEPAHEYFIQCLELKDHIPAQKLPYVYANLALSSEGLGKNKDALGHVW
NFINLKDSLE
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mRNA from alignment at M-pyrifera_M_contig79429:13..942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79429.18646.1 ID=mRNA_M-pyrifera_M_contig79429.18646.1|Name=mRNA_M-pyrifera_M_contig79429.18646.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig79429:13..942+ (Macrocystis pyrifera P11B4 male)
TTAGACTCTTTATTTTTGAGATTTCAAGACCATGTCAATTCTAGCCCCGA
TACCTCGCTCCTAATTGCGAAATCGGCGCTTGAACATTCCCTGGCTATTG
ACAACCAGAAGGGGATATTAATTAGTCATTTTAGCATTGGCAAAGCCTCG
TATCACTTATCAACAATGCAGGAAGCCGCCCATCACTTGAATCGAAGTCA
AGCTTTGGCATTGGAGTTGTCAGATACCACATATCTAGTTTTAAGTAAAA
AATGGTTGGGCAGTATTCTAAGATACCGATCTGACTACGCGGGCGCACTT
GAAGTATATAAAGAAGCATTGACCCTGGCCGAAATTATGAACTTTGATGA
TGAAATTCCAAAGATTACCCAAAATATTGCCATGATCTTTTTAGATCAAA
ACCAGCATGATCTTGCCATTGAATACTACAAAAAAAGTATTGCAAAAATC
AAAGACTTATATACTAAGTCTGTTTGTATGACCAACCTGGGGCTAGCGTA
TCTAAGAAGTCAACAGTATGATCTTGCATTATCTACTTTCATGAATAGTC
TGGATGTTTGTCAAATGAGTAACAACGTGTCGTGCGAAATTTCGCCTATA
ATATTGATTACTCAAACTTATCTGTATCAAGACAAAAACAACGAGGCTCT
GAGTTACGGTTTGGCTACTTTAGAAAAAAGACAAGCATTCGTCTCTAAGG
AGGATCTTGTCAATATTTACAACCAAATAGGTCTCATCTATTTAAACCTC
GAAGATTTCGAACCGGCACATGAATACTTCATACAGTGTTTGGAGCTTAA
AGATCACATTCCTGCCCAAAAATTACCGTATGTTTATGCCAACCTGGCCT
TGTCGTCAGAAGGTCTGGGTAAAAATAAAGATGCACTGGGTCATGTTTGG
AATTTCATCAATTTGAAAGATAGCCTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79429:13..942+

>mRNA_M-pyrifera_M_contig79429.18646.1 ID=mRNA_M-pyrifera_M_contig79429.18646.1|Name=mRNA_M-pyrifera_M_contig79429.18646.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1860bp|location=Sequence derived from alignment at M-pyrifera_M_contig79429:13..942+ (Macrocystis pyrifera P11B4 male)
TTAGACTCTTTATTTTTGAGATTTCAAGACCATGTCAATTCTAGCCCCGA
TACCTCGCTCCTAATTGCGAAATCGGCGCTTGAACATTCCCTGGCTATTG
ACAACCAGAAGGGGATATTAATTAGTCATTTTAGCATTGGCAAAGCCTCG
TATCACTTATCAACAATGCAGGAAGCCGCCCATCACTTGAATCGAAGTCA
AGCTTTGGCATTGGAGTTGTCAGATACCACATATCTAGTTTTAAGTAAAA
AATGGTTGGGCAGTATTCTAAGATACCGATCTGACTACGCGGGCGCACTT
GAAGTATATAAAGAAGCATTGACCCTGGCCGAAATTATGAACTTTGATGA
TGAAATTCCAAAGATTACCCAAAATATTGCCATGATCTTTTTAGATCAAA
ACCAGCATGATCTTGCCATTGAATACTACAAAAAAAGTATTGCAAAAATC
AAAGACTTATATACTAAGTCTGTTTGTATGACCAACCTGGGGCTAGCGTA
TCTAAGAAGTCAACAGTATGATCTTGCATTATCTACTTTCATGAATAGTC
TGGATGTTTGTCAAATGAGTAACAACGTGTCGTGCGAAATTTCGCCTATA
ATATTGATTACTCAAACTTATCTGTATCAAGACAAAAACAACGAGGCTCT
GAGTTACGGTTTGGCTACTTTAGAAAAAAGACAAGCATTCGTCTCTAAGG
AGGATCTTGTCAATATTTACAACCAAATAGGTCTCATCTATTTAAACCTC
GAAGATTTCGAACCGGCACATGAATACTTCATACAGTGTTTGGAGCTTAA
AGATCACATTCCTGCCCAAAAATTACCGTATGTTTATGCCAACCTGGCCT
TGTCGTCAGAAGGTCTGGGTAAAAATAAAGATGCACTGGGTCATGTTTGG
AATTTCATCAATTTGAAAGATAGCCTCGAGTTAGACTCTTTATTTTTGAG
ATTTCAAGACCATGTCAATTCTAGCCCCGATACCTCGCTCCTAATTGCGA
AATCGGCGCTTGAACATTCCCTGGCTATTGACAACCAGAAGGGGATATTA
ATTAGTCATTTTAGCATTGGCAAAGCCTCGTATCACTTATCAACAATGCA
GGAAGCCGCCCATCACTTGAATCGAAGTCAAGCTTTGGCATTGGAGTTGT
CAGATACCACATATCTAGTTTTAAGTAAAAAATGGTTGGGCAGTATTCTA
AGATACCGATCTGACTACGCGGGCGCACTTGAAGTATATAAAGAAGCATT
GACCCTGGCCGAAATTATGAACTTTGATGATGAAATTCCAAAGATTACCC
AAAATATTGCCATGATCTTTTTAGATCAAAACCAGCATGATCTTGCCATT
GAATACTACAAAAAAAGTATTGCAAAAATCAAAGACTTATATACTAAGTC
TGTTTGTATGACCAACCTGGGGCTAGCGTATCTAAGAAGTCAACAGTATG
ATCTTGCATTATCTACTTTCATGAATAGTCTGGATGTTTGTCAAATGAGT
AACAACGTGTCGTGCGAAATTTCGCCTATAATATTGATTACTCAAACTTA
TCTGTATCAAGACAAAAACAACGAGGCTCTGAGTTACGGTTTGGCTACTT
TAGAAAAAAGACAAGCATTCGTCTCTAAGGAGGATCTTGTCAATATTTAC
AACCAAATAGGTCTCATCTATTTAAACCTCGAAGATTTCGAACCGGCACA
TGAATACTTCATACAGTGTTTGGAGCTTAAAGATCACATTCCTGCCCAAA
AATTACCGTATGTTTATGCCAACCTGGCCTTGTCGTCAGAAGGTCTGGGT
AAAAATAAAGATGCACTGGGTCATGTTTGGAATTTCATCAATTTGAAAGA
TAGCCTCGAG
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