mRNA_M-pyrifera_M_contig79379.18637.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79379.18637.1
Unique NamemRNA_M-pyrifera_M_contig79379.18637.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79379.18637.1 vs. uniprot
Match: A0A173MEP8_9BACT (Uncharacterized protein n=1 Tax=Filimonas lacunae TaxID=477680 RepID=A0A173MEP8_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 3.100e-7
Identity = 34/125 (27.20%), Postives = 63/125 (50.40%), Query Frame = 1 
Query:   52 IISSSGSQLKLLEYFLKSGTLPWWASKQPEIDLELIFGELLHTDQSQVRSFIKNGILSSSFRKRLASHFSEALLFSLTEVIVPNQAKTIQTIFKELQTKTNGHAKLKPEWSK-EASFWFNILSCL 423
            I ++    L+LL YFL++G+ PWWA      +LE +   L      ++R+ +     + S R+R+A  F+E+++  + EV+ P ++  I    K +  +   +A +K      + + W  ILS L
Sbjct:  109 ITTTEAGYLRLLVYFLQTGSFPWWAGVSTVYELEDVIERLYKNYSKELRAVLLREGKNESVRRRIAWQFNESVIQKIVEVLEPAESLFILAYHKSITRQQEQYALVKSGTEDFQRALWLFILSFL 233
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BLAST of mRNA_M-pyrifera_M_contig79379.18637.1 vs. uniprot
Match: A0A522R6K8_9BACT (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A522R6K8_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 4.240e-7
Identity = 40/136 (29.41%), Postives = 63/136 (46.32%), Query Frame = 1 
Query:   19 NQTSDLENGVEIISSSGSQLKLLEYFLKSGTLPWWASKQPEIDLELIFGELLHTDQSQVRSFIKNGILSSSFRKRLASHFSEALLFSLTEVIVPNQAKTIQTIFKELQTKTNGHAKLKPEWSK-EASFWFNILSCL 423
            N  +D      + S   S   LLEYFL +GTLPWWAS     D   +   LL  +   V++ I      +  R+RL   FSE ++ S+  ++ P++A  I    +E+    +    +K E S  +   W  I++ L
Sbjct:   97 NHYADSHENNHLSSLKSSYAGLLEYFLITGTLPWWASGNMMTDPAKVIKLLLEENAQAVKNLIHKAGQFADVRRRLIYQFSEEIIRSIVRILEPDEADFIFGYHREIVKIQHAQQIVKDEISVVKKEVWIFIVTYL 232
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BLAST of mRNA_M-pyrifera_M_contig79379.18637.1 vs. uniprot
Match: A0A7Y9HUZ9_9SPHI (Uncharacterized protein n=1 Tax=Mucilaginibacter sp. E4BP6 TaxID=2723089 RepID=A0A7Y9HUZ9_9SPHI)

HSP 1 Score: 52.0 bits (123), Expect = 5.900e-5
Identity = 28/96 (29.17%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:   31 DLENGVEIISSSGSQLKLLEYFLKSGTLPWWASKQPEIDLELIFGELLHTDQSQVRSFIKNGILSSSFRKRLASHFSEALLFSLTEVIVPNQAKTI 318
            D ++G ++         LLEYFL +G +PWWA+ +   D   I    +  D + ++  I N    +  R+RL   FSE ++ S+  ++ P Q+  I
Sbjct:  100 DEDSGQQLKKIESGYANLLEYFLLTGAIPWWATGELLNDPVTIMEHFIAKDVATIKQLIINVGQHNYVRQRLVYQFSEQVIRSIISILEPGQSSFI 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79379.18637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A173MEP8_9BACT3.100e-727.20Uncharacterized protein n=1 Tax=Filimonas lacunae ... [more]
A0A522R6K8_9BACT4.240e-729.41Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A7Y9HUZ9_9SPHI5.900e-529.17Uncharacterized protein n=1 Tax=Mucilaginibacter s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79379contigM-pyrifera_M_contig79379:540..962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog118161.KB235922_gene2576
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidase
EggNOG OGs1G8TE@1117,COG4942@1,COG4942@2
COG Functional cat.D
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.211687-CDS-M-pyrifera_M_contig79379:539..9621622816697.211687-CDS-M-pyrifera_M_contig79379:539..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79379 540..962 -
1692278125.5677152-CDS-M-pyrifera_M_contig79379:539..9621692278125.5677152-CDS-M-pyrifera_M_contig79379:539..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79379 540..962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79379.18637.1prot_M-pyrifera_M_contig79379.18637.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79379 540..962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79379.18637.1

>prot_M-pyrifera_M_contig79379.18637.1 ID=prot_M-pyrifera_M_contig79379.18637.1|Name=mRNA_M-pyrifera_M_contig79379.18637.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
LTEALSNQTSDLENGVEIISSSGSQLKLLEYFLKSGTLPWWASKQPEIDL
ELIFGELLHTDQSQVRSFIKNGILSSSFRKRLASHFSEALLFSLTEVIVP
NQAKTIQTIFKELQTKTNGHAKLKPEWSKEASFWFNILSCL
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mRNA from alignment at M-pyrifera_M_contig79379:540..962-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79379.18637.1 ID=mRNA_M-pyrifera_M_contig79379.18637.1|Name=mRNA_M-pyrifera_M_contig79379.18637.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig79379:540..962- (Macrocystis pyrifera P11B4 male)
CTAACAGAGGCACTTTCAAATCAAACATCTGACCTAGAGAATGGTGTTGA
GATCATTTCTTCTTCAGGGTCGCAACTAAAACTTCTGGAGTATTTTCTCA
AGAGCGGAACACTACCTTGGTGGGCCTCAAAACAACCTGAAATTGACCTT
GAACTCATCTTCGGGGAGCTATTGCATACCGATCAGTCTCAGGTGAGGTC
TTTCATAAAAAATGGCATACTTTCTTCCAGCTTTCGCAAAAGATTGGCCA
GTCATTTTTCCGAAGCACTACTCTTCTCCCTGACTGAAGTGATAGTGCCG
AACCAAGCCAAAACCATACAGACAATCTTCAAAGAACTCCAAACAAAAAC
TAATGGTCACGCCAAACTAAAACCTGAATGGAGTAAAGAAGCTAGCTTTT
GGTTCAATATACTTTCATGCCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79379:540..962-

>mRNA_M-pyrifera_M_contig79379.18637.1 ID=mRNA_M-pyrifera_M_contig79379.18637.1|Name=mRNA_M-pyrifera_M_contig79379.18637.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig79379:540..962- (Macrocystis pyrifera P11B4 male)
CTAACAGAGGCACTTTCAAATCAAACATCTGACCTAGAGAATGGTGTTGA
GATCATTTCTTCTTCAGGGTCGCAACTAAAACTTCTGGAGTATTTTCTCA
AGAGCGGAACACTACCTTGGTGGGCCTCAAAACAACCTGAAATTGACCTT
GAACTCATCTTCGGGGAGCTATTGCATACCGATCAGTCTCAGGTGAGGTC
TTTCATAAAAAATGGCATACTTTCTTCCAGCTTTCGCAAAAGATTGGCCA
GTCATTTTTCCGAAGCACTACTCTTCTCCCTGACTGAAGTGATAGTGCCG
AACCAAGCCAAAACCATACAGACAATCTTCAAAGAACTCCAAACAAAAAC
TAATGGTCACGCCAAACTAAAACCTGAATGGAGTAAAGAAGCTAGCTTTT
GGTTCAATATACTTTCATGCCTTCTAACAGAGGCACTTTCAAATCAAACA
TCTGACCTAGAGAATGGTGTTGAGATCATTTCTTCTTCAGGGTCGCAACT
AAAACTTCTGGAGTATTTTCTCAAGAGCGGAACACTACCTTGGTGGGCCT
CAAAACAACCTGAAATTGACCTTGAACTCATCTTCGGGGAGCTATTGCAT
ACCGATCAGTCTCAGGTGAGGTCTTTCATAAAAAATGGCATACTTTCTTC
CAGCTTTCGCAAAAGATTGGCCAGTCATTTTTCCGAAGCACTACTCTTCT
CCCTGACTGAAGTGATAGTGCCGAACCAAGCCAAAACCATACAGACAATC
TTCAAAGAACTCCAAACAAAAACTAATGGTCACGCCAAACTAAAACCTGA
ATGGAGTAAAGAAGCTAGCTTTTGGTTCAATATACTTTCATGCCTT
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