mRNA_M-pyrifera_M_contig79342.18630.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79342.18630.1
Unique NamemRNA_M-pyrifera_M_contig79342.18630.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79342.18630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79342contigM-pyrifera_M_contig79342:561..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue7.7e-07
Seed eggNOG ortholog886293.Sinac_3409
KEGG rclassRC02795
KEGG koko:K02341,ko:K12132
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ModuleM00260
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfatase-modifying factor enzyme 1
EggNOG OGs2IY3E@203682,COG0470@1,COG0470@2,COG0515@1,COG0515@2,COG1262@1,COG1262@2
EC2.7.11.1,2.7.7.7
COG Functional cat.KLT
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03032,ko03400
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.937759-CDS-M-pyrifera_M_contig79342:560..8931622816696.937759-CDS-M-pyrifera_M_contig79342:560..893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79342 561..893 +
1692278125.4441204-CDS-M-pyrifera_M_contig79342:560..8931692278125.4441204-CDS-M-pyrifera_M_contig79342:560..893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79342 561..893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79342.18630.1prot_M-pyrifera_M_contig79342.18630.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79342 561..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79342.18630.1

>prot_M-pyrifera_M_contig79342.18630.1 ID=prot_M-pyrifera_M_contig79342.18630.1|Name=mRNA_M-pyrifera_M_contig79342.18630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
RALAALAALDSEVPDWNHVSGDLVAQMLTMSTVRLTPWLVAFRPVRNELE
QPLKEQFLSGSDQFLQQRAATVLAELFDDSLETLMSLVPEAKPEQLTPLL
EELKPREKEVA
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mRNA from alignment at M-pyrifera_M_contig79342:561..893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79342.18630.1 ID=mRNA_M-pyrifera_M_contig79342.18630.1|Name=mRNA_M-pyrifera_M_contig79342.18630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig79342:561..893+ (Macrocystis pyrifera P11B4 male)
CGGGCGCTGGCAGCCTTGGCAGCATTGGACTCCGAAGTGCCAGACTGGAA
TCACGTGAGTGGCGACCTTGTCGCCCAGATGCTGACGATGAGTACGGTCA
GGCTGACCCCCTGGCTTGTTGCCTTTCGACCGGTCCGTAACGAGCTGGAG
CAACCGCTCAAAGAGCAGTTCCTCTCTGGCTCTGACCAGTTTCTGCAGCA
GAGGGCAGCAACGGTTCTCGCAGAACTCTTCGATGATTCTCTCGAAACTC
TGATGTCGCTTGTGCCCGAGGCAAAGCCCGAGCAACTGACTCCTCTGCTG
GAAGAACTCAAGCCTCGCGAGAAAGAGGTCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79342:561..893+

>mRNA_M-pyrifera_M_contig79342.18630.1 ID=mRNA_M-pyrifera_M_contig79342.18630.1|Name=mRNA_M-pyrifera_M_contig79342.18630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig79342:561..893+ (Macrocystis pyrifera P11B4 male)
CGGGCGCTGGCAGCCTTGGCAGCATTGGACTCCGAAGTGCCAGACTGGAA
TCACGTGAGTGGCGACCTTGTCGCCCAGATGCTGACGATGAGTACGGTCA
GGCTGACCCCCTGGCTTGTTGCCTTTCGACCGGTCCGTAACGAGCTGGAG
CAACCGCTCAAAGAGCAGTTCCTCTCTGGCTCTGACCAGTTTCTGCAGCA
GAGGGCAGCAACGGTTCTCGCAGAACTCTTCGATGATTCTCTCGAAACTC
TGATGTCGCTTGTGCCCGAGGCAAAGCCCGAGCAACTGACTCCTCTGCTG
GAAGAACTCAAGCCTCGCGAGAAAGAGGTCGCCCGGGCGCTGGCAGCCTT
GGCAGCATTGGACTCCGAAGTGCCAGACTGGAATCACGTGAGTGGCGACC
TTGTCGCCCAGATGCTGACGATGAGTACGGTCAGGCTGACCCCCTGGCTT
GTTGCCTTTCGACCGGTCCGTAACGAGCTGGAGCAACCGCTCAAAGAGCA
GTTCCTCTCTGGCTCTGACCAGTTTCTGCAGCAGAGGGCAGCAACGGTTC
TCGCAGAACTCTTCGATGATTCTCTCGAAACTCTGATGTCGCTTGTGCCC
GAGGCAAAGCCCGAGCAACTGACTCCTCTGCTGGAAGAACTCAAGCCTCG
CGAGAAAGAGGTCGCC
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