mRNA_M-pyrifera_M_contig79327.18625.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79327.18625.1
Unique NamemRNA_M-pyrifera_M_contig79327.18625.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A356KNJ7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KNJ7_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.810e-9
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 LLVQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEALTALNP 174
            L++  AP   P P E Y++YHFTKVG QT   +  +I+ G   D+PV ALE+L A  P
Sbjct:    4 LVISAAPSLLPLPFEDYMRYHFTKVGDQTRFMMGRYIERGRALDLPVRALESLLAKLP 61          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A418WGY5_9PROT (Ketopantoate reductase n=2 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WGY5_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-8
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 LLVQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEALTALNP 174
            LL+ VAP   PF +ET+L+YHF+K+G QT   ++ +ID   KH +P DAL AL    P
Sbjct:  306 LLLPVAPCLVPFNLETFLRYHFSKLGAQTQVVIDGYIDLSIKHSLPADALVALRRALP 363          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A2N1YMY1_9GAMM (ApbA domain-containing protein n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-14 TaxID=2013796 RepID=A0A2N1YMY1_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 2.170e-7
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    4 LVQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEAL 159
            L  +AP   PFP+ETYLKYHF+KVG+QT   +++ I  G    +PV AL  L
Sbjct:  227 LTALAPKVMPFPLETYLKYHFSKVGEQTRMMLDNWIREGTSRSLPVGALSEL 278          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A7Y5GXJ6_9DELT (Ketopantoate reductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GXJ6_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 2.330e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    7 VQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEAL 159
            +++ P +FPF IETYLKYHFTKVG QT  FV  +IDA  +  +  ++L  L
Sbjct:  261 LRLLPRFFPFDIETYLKYHFTKVGDQTRMFVRAYIDAAARWGLSNESLREL 311          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A1J5DWV5_9DELT (ApbA domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1J5DWV5_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 3.190e-7
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query:   31 PFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEAL 159
            PFP+E YL+YHFTK   QT A VN +++ GH+H + +  LEAL
Sbjct:  274 PFPLEAYLRYHFTKTLDQTHAMVNTYVEVGHQHGLEMRDLEAL 316          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: UPI00193AF883 (ketopantoate reductase n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00193AF883)

HSP 1 Score: 53.9 bits (128), Expect = 6.090e-7
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 LLVQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEAL 159
            LL+ +A    PF +ETYLK HFTKVG+QT   +  ++D G    +PVD L+A+
Sbjct:  267 LLLPLAARVTPFDLETYLKVHFTKVGEQTRLMMRTYVDLGRSAGLPVDGLQAV 319          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: UPI001DC84119 (hypothetical protein n=1 Tax=Alcanivorax sp. 1008 TaxID=2816853 RepID=UPI001DC84119)

HSP 1 Score: 51.2 bits (121), Expect = 5.390e-6
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 LLVQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEALTA 165
            ++ ++AP   PFP+ETYL+YHF+KVG QT   ++  I+ G+   +   AL+ L A
Sbjct:  254 MITRLAPKVMPFPLETYLQYHFSKVGVQTRQMLDHWIEEGNAGGLDASALQTLRA 308          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A2T4VRZ9_VITXG (Ketopantoate reductase n=1 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4VRZ9_VITXG)

HSP 1 Score: 50.4 bits (119), Expect = 1.020e-5
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 LLVQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEALT 162
            LL+ +A    P  +ETYL+ HFTKVG QT A +  ++D G    +PV+ L++L+
Sbjct:  266 LLLPIASRVAPIDLETYLRVHFTKVGDQTRAIMRTYVDLGRSAGLPVEHLQSLS 319          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A0G2ZDF9_9DELT (Ketopantoate reductase n=3 Tax=Archangium TaxID=47 RepID=A0A0G2ZDF9_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 2.630e-5
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    1 LLVQVAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDAL 150
            L++ +A    PF +ETYLK HFTKVG+QT   +  ++D G +  +PV+ L
Sbjct:  266 LMLPIAARLTPFDLETYLKVHFTKVGEQTRLMMKTYVDLGRRAGLPVEHL 315          
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Match: A0A849ZD53_9DELT (Ketopantoate reductase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A849ZD53_9DELT)

HSP 1 Score: 47.8 bits (112), Expect = 9.290e-5
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   13 VAPMYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEALT 162
            V P   P  +ETYL+ HFTKVG+QT   +  + +   +H +P DA+E++T
Sbjct:  275 VMPKVAPIDVETYLRVHFTKVGEQTRMLLAGYSERAARHGLPNDAIESMT 324          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79327.18625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A356KNJ7_9BACT1.810e-946.55Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A418WGY5_9PROT1.040e-848.28Ketopantoate reductase n=2 Tax=Oleomonas cavernae ... [more]
A0A2N1YMY1_9GAMM2.170e-750.00ApbA domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A7Y5GXJ6_9DELT2.330e-750.98Ketopantoate reductase n=1 Tax=Myxococcales bacter... [more]
A0A1J5DWV5_9DELT3.190e-753.49ApbA domain-containing protein n=2 Tax=unclassifie... [more]
UPI00193AF8836.090e-747.17ketopantoate reductase n=1 Tax=Archangium violaceu... [more]
UPI001DC841195.390e-641.82hypothetical protein n=1 Tax=Alcanivorax sp. 1008 ... [more]
A0A2T4VRZ9_VITXG1.020e-542.59Ketopantoate reductase n=1 Tax=Vitiosangium sp. (s... [more]
A0A0G2ZDF9_9DELT2.630e-544.00Ketopantoate reductase n=3 Tax=Archangium TaxID=47... [more]
A0A849ZD53_9DELT9.290e-542.00Ketopantoate reductase n=1 Tax=Polyangiaceae bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79327contigM-pyrifera_M_contig79327:68..241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size153
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.6727753-UTR-M-pyrifera_M_contig79327:67..881622816696.6727753-UTR-M-pyrifera_M_contig79327:67..88Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79327 68..88 +
1692278125.29714-UTR-M-pyrifera_M_contig79327:67..881692278125.29714-UTR-M-pyrifera_M_contig79327:67..88Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79327 68..88 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.6858552-CDS-M-pyrifera_M_contig79327:88..2411622816696.6858552-CDS-M-pyrifera_M_contig79327:88..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79327 89..241 +
1692278125.308684-CDS-M-pyrifera_M_contig79327:88..2411692278125.308684-CDS-M-pyrifera_M_contig79327:88..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79327 89..241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79327.18625.1prot_M-pyrifera_M_contig79327.18625.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79327 89..241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79327.18625.1

>prot_M-pyrifera_M_contig79327.18625.1 ID=prot_M-pyrifera_M_contig79327.18625.1|Name=mRNA_M-pyrifera_M_contig79327.18625.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
MYFPFPIETYLKYHFTKVGQQTFAFVNDHIDAGHKHDIPVDALEALTALN
P
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mRNA from alignment at M-pyrifera_M_contig79327:68..241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79327.18625.1 ID=mRNA_M-pyrifera_M_contig79327.18625.1|Name=mRNA_M-pyrifera_M_contig79327.18625.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig79327:68..241+ (Macrocystis pyrifera P11B4 male)
CTCCTGGTGCAGGTCGCGCCAATGTACTTCCCGTTCCCCATCGAGACATA CCTCAAGTACCACTTCACAAAGGTGGGCCAGCAAACCTTCGCCTTCGTCA ACGACCACATTGACGCAGGACACAAGCACGACATCCCCGTAGACGCGCTA GAGGCACTCACGGCACTCAACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79327:68..241+

>mRNA_M-pyrifera_M_contig79327.18625.1 ID=mRNA_M-pyrifera_M_contig79327.18625.1|Name=mRNA_M-pyrifera_M_contig79327.18625.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig79327:68..241+ (Macrocystis pyrifera P11B4 male)
ATGTACTTCCCGTTCCCCATCGAGACATACCTCAAGTACCACTTCACAAA
GGTGGGCCAGCAAACCTTCGCCTTCGTCAACGACCACATTGACGCAGGAC
ACAAGCACGACATCCCCGTAGACGCGCTAGAGGCACTCACGGCACTCAAC
CCCATGTACTTCCCGTTCCCCATCGAGACATACCTCAAGTACCACTTCAC
AAAGGTGGGCCAGCAAACCTTCGCCTTCGTCAACGACCACATTGACGCAG
GACACAAGCACGACATCCCCGTAGACGCGCTAGAGGCACTCACGGCACTC
AACCCC
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