mRNA_M-pyrifera_M_contig7930.18620.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7930.18620.1
Unique NamemRNA_M-pyrifera_M_contig7930.18620.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7930.18620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7930contigM-pyrifera_M_contig7930:4528..5241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size715
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.2405972-UTR-M-pyrifera_M_contig7930:4527..48271622816696.2405972-UTR-M-pyrifera_M_contig7930:4527..4827Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7930 4528..4827 +
1692278125.042156-UTR-M-pyrifera_M_contig7930:4527..48271692278125.042156-UTR-M-pyrifera_M_contig7930:4527..4827Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7930 4528..4827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.2569456-CDS-M-pyrifera_M_contig7930:4827..52411622816696.2569456-CDS-M-pyrifera_M_contig7930:4827..5241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7930 4828..5241 +
1692278125.0559018-CDS-M-pyrifera_M_contig7930:4827..52411692278125.0559018-CDS-M-pyrifera_M_contig7930:4827..5241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7930 4828..5241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7930.18620.1prot_M-pyrifera_M_contig7930.18620.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7930 4828..5241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7930.18620.1

>prot_M-pyrifera_M_contig7930.18620.1 ID=prot_M-pyrifera_M_contig7930.18620.1|Name=mRNA_M-pyrifera_M_contig7930.18620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MSFDGAMYDTEQNIKGGKNGTIQPRPQHATCSSKIVIPVGIAVDVPRSDS
VDNASRYYMIHDTSPVLPAYKKPAKKCFDVFTIEKWRLCKIPILICYLIN
TKPPLSWKLLLYCTRRAWRRHLVLPEELFPPRNVSPNC
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mRNA from alignment at M-pyrifera_M_contig7930:4528..5241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7930.18620.1 ID=mRNA_M-pyrifera_M_contig7930.18620.1|Name=mRNA_M-pyrifera_M_contig7930.18620.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig7930:4528..5241+ (Macrocystis pyrifera P11B4 male)
GTAGACCCGTTTTGGGGAACCAAAACGACACCACTCTTACAATCGACGGA
AATATAAGGACCACTTACGATAGGCATTACTGTGAAGACTCAAGCGGGCC
CGCCTTATCCAACACTACCCCCAAGGCACACTTCCGGCCGCCCATGGTGA
ACCCACAGCAGGAGGTCCACGTCGTCGGTGTCGACTCACAATAATCCCCA
AAAAGCTTCAGGACATTCAACATCGTCATCATAGCGTCCTTCGGGCGCGC
AGGCATGGTGGGGTACGGCCTTTCCTTCGACCGCGTTTGGTTTACAAAAA
ATGAGTTTCGACGGTGCTATGTACGATACAGAGCAGAACATAAAAGGGGG
AAAAAATGGCACCATACAGCCGCGACCTCAACATGCAACATGTTCTTCCA
AGATTGTCATCCCGGTAGGCATTGCCGTCGATGTCCCGCGGAGTGACAGC
GTTGACAACGCGTCGAGGTACTATATGATACATGACACCTCTCCAGTACT
GCCGGCTTACAAAAAACCCGCAAAAAAATGTTTCGACGTTTTTACCATCG
AAAAGTGGCGTCTGTGCAAAATCCCGATCCTCATATGTTACCTGATAAAT
ACAAAACCCCCTCTCTCCTGGAAACTTCTATTGTACTGTACTAGACGGGC
ATGGCGGCGCCATCTCGTACTCCCAGAAGAGCTTTTCCCCCCCCGCAATG
TCTCCCCAAATTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7930:4528..5241+

>mRNA_M-pyrifera_M_contig7930.18620.1 ID=mRNA_M-pyrifera_M_contig7930.18620.1|Name=mRNA_M-pyrifera_M_contig7930.18620.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig7930:4528..5241+ (Macrocystis pyrifera P11B4 male)
ATGAGTTTCGACGGTGCTATGTACGATACAGAGCAGAACATAAAAGGGGG
AAAAAATGGCACCATACAGCCGCGACCTCAACATGCAACATGTTCTTCCA
AGATTGTCATCCCGGTAGGCATTGCCGTCGATGTCCCGCGGAGTGACAGC
GTTGACAACGCGTCGAGGTACTATATGATACATGACACCTCTCCAGTACT
GCCGGCTTACAAAAAACCCGCAAAAAAATGTTTCGACGTTTTTACCATCG
AAAAGTGGCGTCTGTGCAAAATCCCGATCCTCATATGTTACCTGATAAAT
ACAAAACCCCCTCTCTCCTGGAAACTTCTATTGTACTGTACTAGACGGGC
ATGGCGGCGCCATCTCGTACTCCCAGAAGAGCTTTTCCCCCCCCGCAATG
TCTCCCCAAATTGCATGAGTTTCGACGGTGCTATGTACGATACAGAGCAG
AACATAAAAGGGGGAAAAAATGGCACCATACAGCCGCGACCTCAACATGC
AACATGTTCTTCCAAGATTGTCATCCCGGTAGGCATTGCCGTCGATGTCC
CGCGGAGTGACAGCGTTGACAACGCGTCGAGGTACTATATGATACATGAC
ACCTCTCCAGTACTGCCGGCTTACAAAAAACCCGCAAAAAAATGTTTCGA
CGTTTTTACCATCGAAAAGTGGCGTCTGTGCAAAATCCCGATCCTCATAT
GTTACCTGATAAATACAAAACCCCCTCTCTCCTGGAAACTTCTATTGTAC
TGTACTAGACGGGCATGGCGGCGCCATCTCGTACTCCCAGAAGAGCTTTT
CCCCCCCCGCAATGTCTCCCCAAATTGC
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