mRNA_M-pyrifera_M_contig79277.18612.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79277.18612.1
Unique NamemRNA_M-pyrifera_M_contig79277.18612.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: A0A5A8ELV4_CAFRO (CNNM transmembrane domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELV4_CAFRO)

HSP 1 Score: 125 bits (313), Expect = 4.330e-31
Identity = 64/105 (60.95%), Postives = 86/105 (81.90%), Query Frame = 1
Query:   28 GVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            G+SV L++ AG M+GLTMG+VS+D T++EI+++ GT AQ+R+A+ +  FV+ HHLTLV LLL NA ANE LP+FLD L+  I AIV+SVTAVL+FGEILP+A+ T
Sbjct:   57 GISVALIITAGLMAGLTMGVVSMDATYVEILARTGTKAQKRQAKALAPFVKRHHLTLVTLLLANASANEMLPIFLDSLLDPIMAIVLSVTAVLIFGEILPSAVFT 161          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: F2U9P1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U9P1_SALR5)

HSP 1 Score: 121 bits (303), Expect = 3.340e-30
Identity = 61/105 (58.10%), Postives = 83/105 (79.05%), Query Frame = 1
Query:   28 GVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            G+S  LVL+AG  SGLT+G++SLD T ++++S+AG P +Q+ ARR++  V+ HHL LV LLL NA  NE+LPLFLD LV E  AI+ISVTAVL+FGE++P A+C+
Sbjct:   41 GISAALVLLAGVFSGLTLGLLSLDSTQLQVLSEAGKPEEQKYARRIKPLVKRHHLLLVTLLLANAAVNESLPLFLDDLVPEYIAIIISVTAVLMFGEVIPQALCS 145          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: H2Y1N6_CIOIN (CNNM transmembrane domain-containing protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=H2Y1N6_CIOIN)

HSP 1 Score: 113 bits (282), Expect = 1.080e-28
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   22 FAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            + G+ V LVL+AG MSGLTMG++SLD   + ++S  G P +Q+ A+R+   V+ HHL LV LLL NA A E++PLFLD +   ITAIV+SVTAVL+FGE++P A+CT
Sbjct:   38 YLGIYVALVLIAGLMSGLTMGLLSLDLMSLTVLSTDGKPNEQKHAKRILPLVKRHHLLLVTLLLSNAAAVESMPLFLDKISNPITAIVVSVTAVLIFGEVVPQALCT 144          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: UPI0014582F5D (LOW QUALITY PROTEIN: DUF21 domain-containing protein At1g47330-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014582F5D)

HSP 1 Score: 115 bits (289), Expect = 5.030e-28
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   22 FAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            + G+ VGLVLMAG  SGLTMG++SLD   +++M   GTP +++ A+++   V  HHL LV LLLGNA A E++P+FLD +   + AIV+SVTAVL+FGE++P AICT
Sbjct:   37 YLGIYVGLVLMAGMXSGLTMGLLSLDLMSLKVMKDGGTPKERKHAKKILPLVSRHHLLLVTLLLGNAAAVESMPIFLDKISNPVAAIVVSVTAVLIFGEVIPQAICT 143          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: UPI0006B0AD8B (DUF21 domain-containing protein At4g33700-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0AD8B)

HSP 1 Score: 109 bits (273), Expect = 5.680e-28
Identity = 56/107 (52.34%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   22 FAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            + GV V LVL+AG MSGLTMG++S+D T + ++ + G P +++ A  +   VE HHL LV L+ GNA A EA+PLFLD +   ITA+V+SVTAVL+ GE++P A+CT
Sbjct:   38 YIGVYVALVLVAGLMSGLTMGLLSMDITSLRVLEREGKPQEKKNAHTIIPLVEKHHLLLVTLIFGNAAAVEAMPLFLDRVSNPITAVVVSVTAVLLVGEVIPQALCT 144          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: A0A7S0WQE1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WQE1_9CHLO)

HSP 1 Score: 113 bits (282), Expect = 7.670e-28
Identity = 60/105 (57.14%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   28 GVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            G SV L LMAG MSGLT+G++SLD T +E++ ++GT  ++R AR++   +E+ H  LV LLL NALA EALPLFLD L   +TAI+++VTAVL FGEI+P A+CT
Sbjct:   36 GTSVMLTLMAGLMSGLTLGLMSLDMTQMEVLRRSGTDKEKRYARKILPLIENSHFLLVTLLLCNALAMEALPLFLDRLANPVTAIILAVTAVLFFGEIIPQAVCT 140          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: A0A2P6N8I7_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N8I7_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 7.770e-28
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   22 FAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAIC 339
            F G+S+GLVL+AG MSGLT+G++SLD   ++I+ ++GTP Q++ A R+   +++HH  LV LLL N+ A EALP+FLD LV E  AI ISVTAVL+FGEI+P AIC
Sbjct:   62 FIGISIGLVLVAGLMSGLTLGLMSLDRMNLQILIQSGTPHQKKHAGRILPLLDYHHWLLVTLLLCNSAAMEALPIFLDKLVSEYIAIAISVTAVLLFGEIIPQAIC 167          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: A0A7D9LXL5_PARCT (DUF21 domain-containing At4g33700 isoform X2 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LXL5_PARCT)

HSP 1 Score: 108 bits (270), Expect = 1.200e-27
Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   22 FAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            + GV VGLVL AG MSGLTMG++SLD   ++++++ G P +Q+ A ++   V  HHL LV LLL NA+A E++PL LD +   + AIV+SVTAVL+FGE++P A+CT
Sbjct:   55 YLGVYVGLVLFAGLMSGLTMGLLSLDILSLKVLARGGKPDEQKHAAKIIPLVSQHHLLLVTLLLANAVAVESMPLCLDRVSNPVVAIVVSVTAVLLFGEVVPQALCT 161          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: A0A8J1TCH5_OWEFU (Ofus.G021764 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TCH5_OWEFU)

HSP 1 Score: 113 bits (283), Expect = 3.570e-27
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   22 FAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            + G+   LVL AG MSGLTMG++SLDPT I ++  +GTP +++ A R+   V+ HHL LV LLL NA A E++PLFLD +   +TAIV+SV+AVL+FGE+ P A+CT
Sbjct:   71 YLGIYTALVLFAGLMSGLTMGLLSLDPTNIRVLMGSGTPQERKYAARILPLVQRHHLLLVTLLLANAAAVESMPLFLDKISNPVTAIVVSVSAVLLFGEVFPQALCT 177          
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Match: K1QWS8_CRAGI (Metal transporter CNNM2 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1QWS8_CRAGI)

HSP 1 Score: 112 bits (281), Expect = 4.580e-27
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   22 FAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQREARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTAVLVFGEILPAAICT 342
            + G+ VGLVL+AG     TMG++SLD   ++IM + GTP QQR+AR++   V+ HHL LV LLL NA A EA+P+FLD +   + AIV+SVTAVL+FGE++P AICT
Sbjct:   37 YLGIYVGLVLVAGXXXXXTMGLLSLDLMTLQIMKEGGTPKQQRQARKILPIVKRHHLLLVTLLLANAGAVEAMPIFLDRISSPVIAIVVSVTAVLIFGEVVPQAICT 143          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79277.18612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ELV4_CAFRO4.330e-3160.95CNNM transmembrane domain-containing protein n=4 T... [more]
F2U9P1_SALR53.340e-3058.10Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
H2Y1N6_CIOIN1.080e-2855.14CNNM transmembrane domain-containing protein n=3 T... [more]
UPI0014582F5D5.030e-2854.21LOW QUALITY PROTEIN: DUF21 domain-containing prote... [more]
UPI0006B0AD8B5.680e-2852.34DUF21 domain-containing protein At4g33700-like n=1... [more]
A0A7S0WQE1_9CHLO7.670e-2857.14Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A2P6N8I7_9EUKA7.770e-2857.55Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A7D9LXL5_PARCT1.200e-2752.34DUF21 domain-containing At4g33700 isoform X2 n=1 T... [more]
A0A8J1TCH5_OWEFU3.570e-2754.21Ofus.G021764 protein n=1 Tax=Owenia fusiformis Tax... [more]
K1QWS8_CRAGI4.580e-2755.14Metal transporter CNNM2 n=3 Tax=Crassostrea gigas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79277contigM-pyrifera_M_contig79277:13..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score120.9
Seed ortholog evalue3.8e-25
Seed eggNOG ortholog946362.XP_004994099.1
Preferred nameMAM3
KEGG koko:K10335,ko:K16302
KEGG TC9.A.40.3
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006873,GO:0006875,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071840,GO:0098588,GO:0098771,GO:0098805,GO:0098852
EggNOG free text desc.Cyclin and CBS domain divalent metal cation transport mediator
EggNOG OGs38BRM@33154,COG1253@1,KOG2118@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04121
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.9042847-CDS-M-pyrifera_M_contig79277:12..3541622816695.9042847-CDS-M-pyrifera_M_contig79277:12..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79277 13..354 -
1692278124.8680851-CDS-M-pyrifera_M_contig79277:12..3541692278124.8680851-CDS-M-pyrifera_M_contig79277:12..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79277 13..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79277.18612.1prot_M-pyrifera_M_contig79277.18612.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79277 13..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79277.18612.1

>prot_M-pyrifera_M_contig79277.18612.1 ID=prot_M-pyrifera_M_contig79277.18612.1|Name=mRNA_M-pyrifera_M_contig79277.18612.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
NILLVVSFAGVSVGLVLMAGAMSGLTMGMVSLDPTFIEIMSKAGTPAQQR
EARRVRWFVEHHHLTLVALLLGNALANEALPLFLDHLVGEITAIVISVTA
VLVFGEILPAAICT
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mRNA from alignment at M-pyrifera_M_contig79277:13..354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79277.18612.1 ID=mRNA_M-pyrifera_M_contig79277.18612.1|Name=mRNA_M-pyrifera_M_contig79277.18612.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig79277:13..354- (Macrocystis pyrifera P11B4 male)
AATATCCTCCTTGTGGTGTCGTTTGCAGGAGTGAGTGTGGGTTTGGTGTT GATGGCGGGTGCGATGAGCGGGTTGACGATGGGTATGGTGAGCTTGGACC CTACTTTCATCGAGATCATGTCCAAGGCCGGCACTCCAGCGCAACAACGG GAGGCGCGTCGGGTGCGTTGGTTCGTGGAGCACCATCATCTGACTCTGGT AGCACTGTTGCTGGGGAATGCGTTGGCGAATGAAGCGCTTCCGTTGTTTC TGGACCACTTAGTGGGTGAAATTACTGCGATTGTGATTTCCGTGACTGCT GTGCTTGTGTTTGGTGAAATTCTCCCAGCGGCCATTTGCACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79277:13..354-

>mRNA_M-pyrifera_M_contig79277.18612.1 ID=mRNA_M-pyrifera_M_contig79277.18612.1|Name=mRNA_M-pyrifera_M_contig79277.18612.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig79277:13..354- (Macrocystis pyrifera P11B4 male)
AATATCCTCCTTGTGGTGTCGTTTGCAGGAGTGAGTGTGGGTTTGGTGTT
GATGGCGGGTGCGATGAGCGGGTTGACGATGGGTATGGTGAGCTTGGACC
CTACTTTCATCGAGATCATGTCCAAGGCCGGCACTCCAGCGCAACAACGG
GAGGCGCGTCGGGTGCGTTGGTTCGTGGAGCACCATCATCTGACTCTGGT
AGCACTGTTGCTGGGGAATGCGTTGGCGAATGAAGCGCTTCCGTTGTTTC
TGGACCACTTAGTGGGTGAAATTACTGCGATTGTGATTTCCGTGACTGCT
GTGCTTGTGTTTGGTGAAATTCTCCCAGCGGCCATTTGCACGAATATCCT
CCTTGTGGTGTCGTTTGCAGGAGTGAGTGTGGGTTTGGTGTTGATGGCGG
GTGCGATGAGCGGGTTGACGATGGGTATGGTGAGCTTGGACCCTACTTTC
ATCGAGATCATGTCCAAGGCCGGCACTCCAGCGCAACAACGGGAGGCGCG
TCGGGTGCGTTGGTTCGTGGAGCACCATCATCTGACTCTGGTAGCACTGT
TGCTGGGGAATGCGTTGGCGAATGAAGCGCTTCCGTTGTTTCTGGACCAC
TTAGTGGGTGAAATTACTGCGATTGTGATTTCCGTGACTGCTGTGCTTGT
GTTTGGTGAAATTCTCCCAGCGGCCATTTGCACG
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