mRNA_M-pyrifera_M_contig79266.18607.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A3D1GQY3_9GAMM (HTH gntR-type domain-containing protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A3D1GQY3_9GAMM) HSP 1 Score: 269 bits (687), Expect = 1.760e-90 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTSSEPSGQIAA 414 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTSSEPSGQIAA Sbjct: 44 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTSSEPSGQIAA 181
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A6C0U5F5_9GAMM (FadR family transcriptional regulator n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U5F5_9GAMM) HSP 1 Score: 133 bits (334), Expect = 4.000e-36 Identity = 66/129 (51.16%), Postives = 93/129 (72.09%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387 VSR+V REAFK L+A+ II++ GRRARV + DG+ +A HG+R Q ++QQ+WD RR+IE+RAV LAC+HR+E+ A L LA M++ G++ T DIEFH +IA+ +RNPL+ V++SS TS Sbjct: 49 NVSRTVVREAFKALAAMNIIEVSSGRRARVHAFDGSVMALTLSHGLRTQQVTVQQIWDIRRSIEMRAVALACMHRSERTARRLEELAGLMRETHGDIATMTEHDIEFHLTIAEATRNPLYPVLISSLTS 177
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A2E7GML6_9ALTE (GntR family transcriptional regulator n=3 Tax=Alteromonadaceae TaxID=72275 RepID=A0A2E7GML6_9ALTE) HSP 1 Score: 128 bits (321), Expect = 3.590e-34 Identity = 63/129 (48.84%), Postives = 90/129 (69.77%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387 GVSR+V REAFK+L+A+ II++G GRRARV ++G+ +A V Q S QQVWDARR +E R+VELA +HRT+++AD L+ L M+ + T+ D+ FH++IA SRNPL+ +++SS TS Sbjct: 49 GVSRTVVREAFKVLAAMHIIEVGAGRRARVRKMEGSVIALMMSQAVHTEQMSTQQVWDARRTVEARSVELAAIHRTQQDADKLLQLVNTMRDSEDDPILMTQTDLAFHSTIAQASRNPLYPILVSSLTS 177
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: UPI001BDC9540 (FadR family transcriptional regulator n=1 Tax=Denitromonas sp. (strain IR12) TaxID=2795389 RepID=UPI001BDC9540) HSP 1 Score: 125 bits (315), Expect = 3.650e-33 Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387 GVSR+V REAFK LSA++II++ GRRARVG DG+ +A H +R Q S QQ+WDARRA+E R V LA R++ EA HL++L +QM+ ++ T DI FH +IA+ +RNPLF V+++S TS Sbjct: 59 GVSRTVIREAFKSLSAIRIIEMRAGRRARVGGFDGSVIALSLTHALRTEQISPQQMWDARRAVERRTVALAASRRSDAEAAHLLALVEQMRDARHDLARMTEHDIAFHVAIANATRNPLFPVLVASLTS 187
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A6N6L9U9_9PROT (FadR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6N6L9U9_9PROT) HSP 1 Score: 122 bits (305), Expect = 9.930e-32 Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387 GVSR+V REAFK L+A++II++ GRRARVG D + +A H +R Q + Q+WDARRA+E+R+V LA + RT+ EA L+ QM+ ++ T +DI FH +IAD SRNPLFSV++ S +S Sbjct: 53 GVSRTVVREAFKSLAAMRIIEMHAGRRARVGGFDASVMALSLTHALRTEQINAPQMWDARRAVEMRSVALAAMRRTDAEAAALLEQVAQMRDCVDDLARMTELDIAFHVAIADASRNPLFSVLVGSLSS 181
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A7X9WKL5_9SPHN (FadR family transcriptional regulator n=1 Tax=Sphingomonas sp. G-3-2-10 TaxID=2728838 RepID=A0A7X9WKL5_9SPHN) HSP 1 Score: 121 bits (304), Expect = 1.180e-31 Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSS 378 GVSR+V REAF L+AL+++D+ GRRARVG++DG+ +AT H V Q S +VWD RR +ELR LA RT+ EA ++ LA M N+ E TRID+ FH +IAD S N LF M+ S Sbjct: 45 GVSRAVMREAFGALAALRVLDVANGRRARVGAIDGSVMATSLDHAVSTAQISFNEVWDVRRTVELRIAALAAERRTDAEAKRIVELADAMTAAAENLPELTRIDVAFHQAIADASHNQLFRQMVRS 170
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: UPI001C5BA31F (FadR family transcriptional regulator n=1 Tax=Stakelama flava TaxID=2860338 RepID=UPI001C5BA31F) HSP 1 Score: 117 bits (293), Expect = 4.870e-30 Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLF 360 GVSR+VTREAF L+AL++ID+G GRRARVG++DG+ + H V Q S+ Q+WD RR +ELR VELA LHR++++A ++ LA M + ++E T+ DI FH +IA S N LF Sbjct: 45 GVSRAVTREAFGALAALRLIDVGNGRRARVGAIDGSVMGASLDHAVVTAQVSMAQIWDVRRTLELRTVELAALHRSDQDAKLILQLADCMAEQHADLEALTQHDIAFHQAIARASGNALF 164
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: UPI000289268C (FCD domain-containing protein n=1 Tax=Halomonas TaxID=2745 RepID=UPI000289268C) HSP 1 Score: 117 bits (293), Expect = 5.500e-30 Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCT 384 GVSR+V REAFK L+A++I+++ GRR RV + D +A H +R Q + QQ+ DARRAIELR VELA R+E EA L+SL ++M+ VE T DI FH ++A +RNPLF V++SS T Sbjct: 48 GVSRTVVREAFKSLAAMRILEMSAGRRTRVAAFDDTAIALTLSHALRTEQLNPQQLLDARRAIELRTVELAAGRRSEAEARELLSLVERMRTSYNEVEAMTEADIAFHVAVAQATRNPLFPVLVSSLT 175
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A371XEB0_9HYPH (FadR family transcriptional regulator n=1 Tax=Mesorhizobium denitrificans TaxID=2294114 RepID=A0A371XEB0_9HYPH) HSP 1 Score: 115 bits (289), Expect = 2.130e-29 Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSS 378 GVSR+V REAF+ LSAL++ID+G GRRARV DG+ + H V +Q SIQQ++D RR IELR LA RT EAD + +A M+ + +DI FH ++A SRNPLF++++SS Sbjct: 47 GVSRAVAREAFRSLSALRLIDVGNGRRARVAPADGSAIGRMIDHCVYTNQLSIQQIFDVRRTIELRTAALAAFRRTPAEADEISDIANNMRTSYAGTGDVMELDIAFHAAVARASRNPLFALLVSS 172
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A1V1PNT8_9PROT (Lactate-responsive regulator LldR in Firmicutes of GntR family n=1 Tax=alpha proteobacterium U9-1i TaxID=1605283 RepID=A0A1V1PNT8_9PROT) HSP 1 Score: 115 bits (289), Expect = 2.510e-29 Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLF 360 GVSR+V REAF L+AL++ID+G GR+ RVG++DGA +A H V Q ++ ++WD RR IE+R LA + RTE+EA +++LA+ M K G ++ + DI FHN+IA S N LF Sbjct: 50 GVSRAVMREAFGALAALRLIDVGNGRKPRVGAIDGAVIAASLDHAVSTAQITVPEIWDVRRTIEMRTAALAAVSRTEEEAAEIVALAEAMAKDGDDLTSRIQHDIAFHNAIARASHNALF 169 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig79266.18607.1 >prot_M-pyrifera_M_contig79266.18607.1 ID=prot_M-pyrifera_M_contig79266.18607.1|Name=mRNA_M-pyrifera_M_contig79266.18607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQback to top mRNA from alignment at M-pyrifera_M_contig79266:552..968- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig79266.18607.1 ID=mRNA_M-pyrifera_M_contig79266.18607.1|Name=mRNA_M-pyrifera_M_contig79266.18607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig79266:552..968- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig79266:552..968- >mRNA_M-pyrifera_M_contig79266.18607.1 ID=mRNA_M-pyrifera_M_contig79266.18607.1|Name=mRNA_M-pyrifera_M_contig79266.18607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig79266:552..968- (Macrocystis pyrifera P11B4 male)back to top |