mRNA_M-pyrifera_M_contig79212.18594.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79212.18594.1
Unique NamemRNA_M-pyrifera_M_contig79212.18594.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79212.18594.1 vs. uniprot
Match: D7G6J3_ECTSI (Similar to ring finger protein 167 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J3_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.460e-20
Identity = 60/110 (54.55%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:    1 VSGSFLFNSTLILLGFVWCGVTFARLVCVHRARDSAAAASASFQLEHGAAPGGGGPFAAXXXXXXXXXXXXXXAGLTPAQIRRLELTNTLPVRRSFGGSKRAAVGGGAEV 330
            +S SFLFNSTLILLGFVWCGVTFARLVCVHRAR+SA + +       G     G  F                AGLTPAQIR LE TN LP  R FG SK A  GG  +V
Sbjct:   21 ISTSFLFNSTLILLGFVWCGVTFARLVCVHRARESALSGAHFSDRRGGRGDQTGAGFTGTGLGAATSAGP---AGLTPAQIRSLEQTNVLPKHRRFG-SKLAGGGGDMDV 126
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BLAST of mRNA_M-pyrifera_M_contig79212.18594.1 vs. uniprot
Match: A0A6H5JXB7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.890e-19
Identity = 57/110 (51.82%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 VSGSFLFNSTLILLGFVWCGVTFARLVCVHRARDSAAAASASFQLEHGAAPGGGGPFAAXXXXXXXXXXXXXXAGLTPAQIRRLELTNTLPVRRSFGGSKRAAVGGGAEV 330
            +S SFLFNSTL+LLGFVWCGVTFARLVCVHRAR+SA + +       G     G   A               AGLTPAQIR LE TN LP  R FG      VGGG ++
Sbjct:  223 ISSSFLFNSTLVLLGFVWCGVTFARLVCVHRARESALSGAHLSDRRGGRGDQTG---AGLTLTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSK---LVGGGGDM 326
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79212.18594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6J3_ECTSI9.460e-2054.55Similar to ring finger protein 167 isoform 1 n=1 T... [more]
A0A6H5JXB7_9PHAE4.890e-1951.82RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79212contigM-pyrifera_M_contig79212:252..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog2880.D7G6J3
KEGG koko:K13148,ko:K19041
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0031090,GO:0032182,GO:0032183,GO:0032184,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Ec32 ortholog descriptiondelta-1-pyrroline-5-carboxylate reductase
Ec32 orthologEc-05_006410.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko04121
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.0083833-CDS-M-pyrifera_M_contig79212:251..5811622816695.0083833-CDS-M-pyrifera_M_contig79212:251..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79212 252..581 -
1692278124.342053-CDS-M-pyrifera_M_contig79212:251..5811692278124.342053-CDS-M-pyrifera_M_contig79212:251..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79212 252..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79212.18594.1prot_M-pyrifera_M_contig79212.18594.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79212 252..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79212.18594.1

>prot_M-pyrifera_M_contig79212.18594.1 ID=prot_M-pyrifera_M_contig79212.18594.1|Name=mRNA_M-pyrifera_M_contig79212.18594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
VSGSFLFNSTLILLGFVWCGVTFARLVCVHRARDSAAAASASFQLEHGAA
PGGGGPFAAGAGGLGAATSGGAPAGLTPAQIRRLELTNTLPVRRSFGGSK
RAAVGGGAEV
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mRNA from alignment at M-pyrifera_M_contig79212:252..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79212.18594.1 ID=mRNA_M-pyrifera_M_contig79212.18594.1|Name=mRNA_M-pyrifera_M_contig79212.18594.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig79212:252..581- (Macrocystis pyrifera P11B4 male)
GTAAGCGGGAGCTTCCTCTTCAACTCCACACTTATCCTGCTGGGGTTCGT
CTGGTGCGGCGTAACCTTCGCTCGCCTCGTCTGCGTCCACCGAGCTCGAG
ACAGCGCCGCCGCCGCCTCCGCTAGCTTCCAGCTGGAGCACGGCGCAGCG
CCGGGGGGCGGGGGGCCCTTCGCGGCGGGAGCTGGAGGTCTAGGTGCTGC
CACGTCGGGCGGGGCACCGGCCGGGCTTACCCCGGCTCAAATAAGACGCC
TGGAACTGACGAATACCTTACCAGTTCGGCGGAGCTTTGGTGGTTCCAAG
CGGGCCGCAGTCGGTGGAGGTGCAGAAGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79212:252..581-

>mRNA_M-pyrifera_M_contig79212.18594.1 ID=mRNA_M-pyrifera_M_contig79212.18594.1|Name=mRNA_M-pyrifera_M_contig79212.18594.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig79212:252..581- (Macrocystis pyrifera P11B4 male)
GTAAGCGGGAGCTTCCTCTTCAACTCCACACTTATCCTGCTGGGGTTCGT
CTGGTGCGGCGTAACCTTCGCTCGCCTCGTCTGCGTCCACCGAGCTCGAG
ACAGCGCCGCCGCCGCCTCCGCTAGCTTCCAGCTGGAGCACGGCGCAGCG
CCGGGGGGCGGGGGGCCCTTCGCGGCGGGAGCTGGAGGTCTAGGTGCTGC
CACGTCGGGCGGGGCACCGGCCGGGCTTACCCCGGCTCAAATAAGACGCC
TGGAACTGACGAATACCTTACCAGTTCGGCGGAGCTTTGGTGGTTCCAAG
CGGGCCGCAGTCGGTGGAGGTGCAGAAGTTGTAAGCGGGAGCTTCCTCTT
CAACTCCACACTTATCCTGCTGGGGTTCGTCTGGTGCGGCGTAACCTTCG
CTCGCCTCGTCTGCGTCCACCGAGCTCGAGACAGCGCCGCCGCCGCCTCC
GCTAGCTTCCAGCTGGAGCACGGCGCAGCGCCGGGGGGCGGGGGGCCCTT
CGCGGCGGGAGCTGGAGGTCTAGGTGCTGCCACGTCGGGCGGGGCACCGG
CCGGGCTTACCCCGGCTCAAATAAGACGCCTGGAACTGACGAATACCTTA
CCAGTTCGGCGGAGCTTTGGTGGTTCCAAGCGGGCCGCAGTCGGTGGAGG
TGCAGAAGTT
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