mRNA_M-pyrifera_M_contig7917.18585.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7917.18585.1
Unique NamemRNA_M-pyrifera_M_contig7917.18585.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: D8LMI7_ECTSI (Glycolipid 2-alpha-mannosyltransferase, C-terminal, family GT15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI7_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.450e-47
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 1 
Query:    1 IHTVPCENRHFQAVPAFYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKILQVQGCRH 237
            IH VPC +RHFQAVPAFYTNFE ARIQM RSSWYQDWFNAVDKTGSIFY+RWGDAP+RFLGLAMHLP++KIL+VQGCRH
Sbjct:   76 IHHVPCRDRHFQAVPAFYTNFEVARIQMLRSSWYQDWFNAVDKTGSIFYNRWGDAPIRFLGLAMHLPADKILEVQGCRH 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: UPI000440845F (glycosyl transferase n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI000440845F)

HSP 1 Score: 67.8 bits (164), Expect = 1.980e-11
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F++NFE A +  FRS  Y  +FN++D+TG+ FY RWGDAPV  +G+A+ LP E+I
Sbjct:  301 FWSNFEVADLDFFRSPSYLQFFNSLDQTGNFFYERWGDAPVHSIGVALLLPKEQI 355
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: A0A8J2T938_ZYGB2 (ZYBA0S09-04940g1_1 n=2 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A8J2T938_ZYGB2)

HSP 1 Score: 67.4 bits (163), Expect = 2.810e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F++NFE A + ++RS  YQD+F+ +D+TG+ FY RWGDAPV  +  A+ LP +KI
Sbjct:  361 FWSNFEVANLNLWRSPAYQDFFSTLDETGNFFYERWGDAPVHSIAAALILPKDKI 415
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: A0A2V1AHT2_9ASCO (Uncharacterized protein n=1 Tax=[Candida] duobushaemulonis TaxID=1231522 RepID=A0A2V1AHT2_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 7.360e-11
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F++NFE A +  +RS  Y+D+F+ +DKTG  FY RWGDAP+  +  A+ LP +KI
Sbjct:  313 FWSNFEVASLNFWRSQAYRDYFDYLDKTGGFFYERWGDAPIHSIAAALFLPKDKI 367
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: A0A2T9Z2B9_9FUNG (Uncharacterized protein n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9Z2B9_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 9.840e-11
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKILQVQ--GCRH 237
            F++NFE A +  FRS  Y+ +FN +DKTG+ FY RWGDAPV  L   + L  ++I+ ++  G RH
Sbjct:  332 FWSNFEIASLDFFRSEEYESYFNYLDKTGNFFYERWGDAPVHSLAAGLFLDKDEIIFMEDIGYRH 396
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: A0A286UL46_9AGAM (Glycosyltransferase family 15 n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UL46_9AGAM)

HSP 1 Score: 65.5 bits (158), Expect = 1.290e-10
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F++NFE A +  FRS  Y  +FN +D TG  FY RWGDAPV  +G+A+ +P E+I
Sbjct:  289 FWSNFEVADLDFFRSDAYMTFFNYLDSTGKFFYERWGDAPVHSIGVALLMPREQI 343
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: H2AVR2_KAZAF (Uncharacterized protein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AVR2_KAZAF)

HSP 1 Score: 65.1 bits (157), Expect = 1.780e-10
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F+TNFE A ++ +RS  YQD+FN +DK+G  FY RWGDAPV  +  A+ L   ++
Sbjct:  293 FWTNFEIASLEFYRSKAYQDYFNYLDKSGGFFYERWGDAPVHSIAAALFLDKSEL 347
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: A3LNY8_PICST (Glycolipid 2-alpha-mannosyltransferase (Alpha-1,2-mannosyltransferase) n=1 Tax=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) TaxID=322104 RepID=A3LNY8_PICST)

HSP 1 Score: 65.1 bits (157), Expect = 1.780e-10
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F++NFE A +  +RS  Y+D+F  +DKTG  FY RWGDAPV  +  ++ LP +KI
Sbjct:  297 FWSNFEVASLNFWRSQAYRDYFEYLDKTGGFFYERWGDAPVHSIAASLFLPKDKI 351
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: W6MNR0_9ASCO (Uncharacterized protein n=1 Tax=Kuraishia capsulata CBS 1993 TaxID=1382522 RepID=W6MNR0_9ASCO)

HSP 1 Score: 65.1 bits (157), Expect = 1.830e-10
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F++NFE A + ++RS +Y+++FN +D+TG  FY RWGDAPV  +G A+ L ++K 
Sbjct:  245 FWSNFEIADLDIWRSEFYENFFNFLDRTGGFFYERWGDAPVHTIGAALQLSADKF 299
[Close]
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Match: A0A261XYI9_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XYI9_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 1.890e-10
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   49 FYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYSRWGDAPVRFLGLAMHLPSEKI 213
            F++NFE A + ++RS  Y D+FN +DKTG+ FY RWGDAPV  L   + L +E+I
Sbjct:  835 FWSNFEIASLNLWRSPQYMDYFNYLDKTGNFFYERWGDAPVHSLAAGLFLSTEQI 889
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7917.18585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMI7_ECTSI1.450e-4787.34Glycolipid 2-alpha-mannosyltransferase, C-terminal... [more]
UPI000440845F1.980e-1152.73glycosyl transferase n=1 Tax=Fomitiporia mediterra... [more]
A0A8J2T938_ZYGB22.810e-1150.91ZYBA0S09-04940g1_1 n=2 Tax=Zygosaccharomyces TaxID... [more]
A0A2V1AHT2_9ASCO7.360e-1149.09Uncharacterized protein n=1 Tax=[Candida] duobusha... [more]
A0A2T9Z2B9_9FUNG9.840e-1146.15Uncharacterized protein n=2 Tax=Harpellales TaxID=... [more]
A0A286UL46_9AGAM1.290e-1050.91Glycosyltransferase family 15 n=1 Tax=Pyrrhoderma ... [more]
H2AVR2_KAZAF1.780e-1049.09Uncharacterized protein n=1 Tax=Kazachstania afric... [more]
A3LNY8_PICST1.780e-1049.09Glycolipid 2-alpha-mannosyltransferase (Alpha-1,2-... [more]
W6MNR0_9ASCO1.830e-1047.27Uncharacterized protein n=1 Tax=Kuraishia capsulat... [more]
A0A261XYI9_9FUNG1.890e-1050.91Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7917contigM-pyrifera_M_contig7917:174..1905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue7.5e-36
Seed eggNOG ortholog2880.D8LMI7
KEGG koko:K03854,ko:K10967
KEGG ReactionR09300,R09301
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mannoprotein biosynthetic process
EggNOG OGsCOG5020@1,KOG4472@2759
Ec32 ortholog descriptionGlycolipid 2-alpha-mannosyltransferase,family GT15
Ec32 orthologEc-05_002900.1
COG Functional cat.G
CAZyGT15
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons3
Model size243
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7917.18585.1prot_M-pyrifera_M_contig7917.18585.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7917 174..1905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.5929852-CDS-M-pyrifera_M_contig7917:173..2541622816694.5929852-CDS-M-pyrifera_M_contig7917:173..254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7917 174..254 +
1692278124.0933459-CDS-M-pyrifera_M_contig7917:173..2541692278124.0933459-CDS-M-pyrifera_M_contig7917:173..254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7917 174..254 +
1622816694.6047976-CDS-M-pyrifera_M_contig7917:1171..12421622816694.6047976-CDS-M-pyrifera_M_contig7917:1171..1242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7917 1172..1242 +
1692278124.1061144-CDS-M-pyrifera_M_contig7917:1171..12421692278124.1061144-CDS-M-pyrifera_M_contig7917:1171..1242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7917 1172..1242 +
1622816694.6162114-CDS-M-pyrifera_M_contig7917:1814..19051622816694.6162114-CDS-M-pyrifera_M_contig7917:1814..1905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7917 1815..1905 +
1692278124.116224-CDS-M-pyrifera_M_contig7917:1814..19051692278124.116224-CDS-M-pyrifera_M_contig7917:1814..1905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7917 1815..1905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7917.18585.1

>prot_M-pyrifera_M_contig7917.18585.1 ID=prot_M-pyrifera_M_contig7917.18585.1|Name=mRNA_M-pyrifera_M_contig7917.18585.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
IHTVPCENRHFQAVPAFYTNFEAARIQMFRSSWYQDWFNAVDKTGSIFYS
RWGDAPVRFLGLAMHLPSEKILQVQGCRHS*
back to top

mRNA from alignment at M-pyrifera_M_contig7917:174..1905+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7917.18585.1 ID=mRNA_M-pyrifera_M_contig7917.18585.1|Name=mRNA_M-pyrifera_M_contig7917.18585.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1732bp|location=Sequence derived from alignment at M-pyrifera_M_contig7917:174..1905+ (Macrocystis pyrifera P11B4 male)
ATACACACCGTGCCCTGCGAGAACCGCCACTTCCAAGCGGTGCCGGCGTT
CTACACCAACTTTGAGGCTGCTAGAATACAGGTGAGGTCTGGGTATTAGG
CAACCTAAACATCTGGGTCTGTCTGTCTGTCTGTCTGTCTGTCCTGTGAT
GGAAACACAAACGAAACGAAAATAAAACGGCAGCGGTAACAGTAATCCCA
GCGCAAACGGGTAGTGCCGGGTTAGCCCAAAATTCCAATTAATAACACTG
TATATGGAGCCTGCCGAGCGCTTTGATGCGCGACACATTCCGAGCTTTAA
CTAAAACTGTAAATACTAATCGCTTGGTGAGACGACCAAAGGCAAAGCCT
TCCATGCACAGAGTACCGAATGAGTCGCACCATATATGCTAGTAGACTTT
TTCGGAGACTCTCCTCTGAATATCGTTGGAAAGGGAGGCCTTTTCCTTCC
GAGGACAGGGGGCAAATAAAGTAGCCCAGGCGTTTCCTTTACTTCATCCG
GTCGGTTCTTAACCCGGTTCGTAATCGGTTGCGGCCAGCCCGGCGAAACA
TCATGGGTGTGCTGAGCGCTTTATGGGCGAAACATTCGAAGCAATTCATT
TTCCATGAGAGGCAAATGGGTCTTATTTTTATGTGCAACGCGAGACTCAT
GCTCGTATGCACCCTGTGCTCGCTGGAATCGACTTTCGATTGGTTGTGAT
TTTGAAAACTATCGTCATGTTAGCCATCCGACTGTGTGCAGCAATGGTCG
ACGAGCCTCGACGTTGATCACTCAAAAACATTCCAAGGAAAAAAAAAAAC
AGAACAAAAAACGAACACAGGTGCACGAGTCAAACTGCATCCTGTACGTA
CCCGCTTGCGGCTTGTTAGCATATATCTACTACAACCAGCTTGCTGACGT
TTTCGGCTTGTCATCAAAACATTTGGACACAATATTGTCTGTCTGCCCCC
CCCGCCGCGTTCCCCAACGCTGGGTCGATTAATTTTGCCCTTCCTCAGAT
GTTCCGAAGCTCTTGGTATCAGGACTGGTTCAACGCGGTGGATAAAACTG
GTTCTATCTTCTACAGCAGGTGATACGGCGGAGGTTTTGGTGGTGTATTC
TTTACGATGTGTGTGTCGCGCCGTATTTAACGCCTTAAGAACTGCGCGCA
CTTGTTCAATTTGAGCAAACAGACGTCCTCTGGATAGCTTATTACACAAC
TACGGGGGACCATAGTAAACAGGACCAAATGTTGTTAGAAAGAGTAGGTA
AATAGATAGTTTTTTATGTACACCCTAGGTCCTATTAACTATGGACCCCC
GTAATAGTACTTGATGCCGTGTTTATGCCGACGATGCTGGAGCTACAGTT
GCCTTTTCCAACTTTTCCAACAGCGTGTTGGTTGTTGAAACCGGCATCGT
GGAAACAGCGTGCTACATGTGGAAACGTGAAAAAAACATGTCCCACAGGC
ACGACGTTTCGGTGCAAGACATATCGGCACAAATGTATACCAGCAAACGA
ATCAGCTCAGGTGCTGATAACAACAAAAACGTTTTTTTTCACCATCACAC
GCTTCAGGGGTGCGTCTGAGCTTCGTCGACCTGTTAGCACTATCGCCTGT
CTGCCTGCCCTGAACCGCGCGTGCTATTGTTGTGACTACAGGTGGGGAGA
TGCGCCTGTTCGTTTCCTCGGGCTGGCCATGCACCTACCCTCTGAGAAGA
TCCTTCAAGTCCAAGGCTGCCGTCACTCCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7917:174..1905+

>mRNA_M-pyrifera_M_contig7917.18585.1 ID=mRNA_M-pyrifera_M_contig7917.18585.1|Name=mRNA_M-pyrifera_M_contig7917.18585.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig7917:174..1905+ (Macrocystis pyrifera P11B4 male)
ATACACACCGTGCCCTGCGAGAACCGCCACTTCCAAGCGGTGCCGGCGTT
CTACACCAACTTTGAGGCTGCTAGAATACAGATACACACCGTGCCCTGCG
AGAACCGCCACTTCCAAGCGGTGCCGGCGTTCTACACCAACTTTGAGGCT
GCTAGAATACAGATGTTCCGAAGCTCTTGGTATCAGGACTGGTTCAACGC
GGTGGATAAAACTGGTTCTATCTTCTACAGCAGATGTTCCGAAGCTCTTG
GTATCAGGACTGGTTCAACGCGGTGGATAAAACTGGTTCTATCTTCTACA
GCAGGTGGGGAGATGCGCCTGTTCGTTTCCTCGGGCTGGCCATGCACCTA
CCCTCTGAGAAGATCCTTCAAGTCCAAGGCTGCCGTCACTCCTAAGTGGG
GAGATGCGCCTGTTCGTTTCCTCGGGCTGGCCATGCACCTACCCTCTGAG
AAGATCCTTCAAGTCCAAGGCTGCCGTCACTCCTAA
back to top