mRNA_M-pyrifera_M_contig79165.18584.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79165.18584.1
Unique NamemRNA_M-pyrifera_M_contig79165.18584.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: D8LSU7_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.290e-11
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIK 96
            VQNQIYLLDFQKLEGDPFGFMSLCSQVI ++K
Sbjct:  439 VQNQIYLLDFQKLEGDPFGFMSLCSQVINQLK 470
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A6H5J9V4_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.810e-11
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIK 96
            VQNQIYLLDFQKLEGDPFGFMS+CSQVI ++K
Sbjct:  964 VQNQIYLLDFQKLEGDPFGFMSVCSQVINQLK 995
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A7S2W5U8_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5U8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.930e-7
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIKA 99
            VQ  IYLLDFQKL+G+PF FM+LC+++I E+KA
Sbjct:  489 VQPSIYLLDFQKLDGNPFDFMTLCARIITELKA 521
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A7S3M690_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M690_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.100e-6
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIK 96
            VQ  IYLLDFQ++EGD FGFM LC+ +I E+K
Sbjct:  138 VQQNIYLLDFQRVEGDAFGFMKLCAFIITELK 169
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A7S3JSI0_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSI0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.320e-6
Identity = 20/33 (60.61%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIKA 99
            VQ  I+LLDFQ ++GD FGFM+LC+++I+E+KA
Sbjct:  633 VQQNIFLLDFQNIDGDCFGFMTLCAKIIKELKA 665
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A7S1H032_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H032_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.340e-6
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIK 96
            VQ  IYLLDFQK+ GD F FM+LC+ +I E+K
Sbjct:   61 VQQSIYLLDFQKMTGDAFSFMTLCANIITELK 92
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A7S2FBV0_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBV0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.550e-6
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIKA 99
            VQ  IYLLDF K+EG+PF FM+LC+++I E+KA
Sbjct:  475 VQASIYLLDFLKIEGNPFDFMTLCARIITELKA 507
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A7S2PPV1_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPV1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.210e-6
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIK 96
            VQ  IYLLDFQK+ GD F FM+LCS +I E+K
Sbjct:  662 VQQSIYLLDFQKMTGDAFSFMTLCSNIITELK 693
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BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A7S1B3M6_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3M6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.500e-6
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIK 96
            VQ  IYLLDFQKL GD F FM+LC+ +I E+K
Sbjct:  589 VQQSIYLLDFQKLTGDAFSFMTLCANIITELK 620
[Close]
BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Match: A0A1Z5JET8_FISSO (Non-specific serine/threonine protein kinase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JET8_FISSO)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIK 96
            VQ  IYLLDFQK+ GD F FM+LC+ +I E+K
Sbjct:  622 VQQNIYLLDFQKISGDAFSFMTLCANIITELK 653
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79165.18584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSU7_ECTSI2.290e-1190.63Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5J9V4_9PHAE5.810e-1187.50Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2W5U8_9STRA6.930e-766.67Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S3M690_9STRA3.100e-665.63Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S3JSI0_9STRA3.320e-660.61Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S1H032_9STRA4.340e-662.50Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2FBV0_9STRA4.550e-663.64Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2PPV1_9STRA6.210e-665.63Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S1B3M6_9STRA8.500e-665.63Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1Z5JET8_FISSO1.160e-562.50Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79165contigM-pyrifera_M_contig79165:75..191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSNF1-related protein kinase
Ec32 orthologEc-01_011080.3
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.5574028-CDS-M-pyrifera_M_contig79165:74..1911622816694.5574028-CDS-M-pyrifera_M_contig79165:74..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79165 75..191 -
1692278124.0800622-CDS-M-pyrifera_M_contig79165:74..1911692278124.0800622-CDS-M-pyrifera_M_contig79165:74..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79165 75..191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79165.18584.1prot_M-pyrifera_M_contig79165.18584.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79165 75..191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79165.18584.1

>prot_M-pyrifera_M_contig79165.18584.1 ID=prot_M-pyrifera_M_contig79165.18584.1|Name=mRNA_M-pyrifera_M_contig79165.18584.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
VQNQIYLLDFQKLEGDPFGFMSLCSQVIEEIKAPLYCE*
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mRNA from alignment at M-pyrifera_M_contig79165:75..191-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79165.18584.1 ID=mRNA_M-pyrifera_M_contig79165.18584.1|Name=mRNA_M-pyrifera_M_contig79165.18584.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig79165:75..191- (Macrocystis pyrifera P11B4 male)
GTCCAGAATCAGATTTATTTGCTGGATTTTCAGAAGCTGGAGGGGGACCC
GTTCGGCTTCATGTCTCTCTGTTCGCAGGTGATAGAAGAGATTAAAGCAC
CCTTATATTGCGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79165:75..191-

>mRNA_M-pyrifera_M_contig79165.18584.1 ID=mRNA_M-pyrifera_M_contig79165.18584.1|Name=mRNA_M-pyrifera_M_contig79165.18584.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig79165:75..191- (Macrocystis pyrifera P11B4 male)
GTCCAGAATCAGATTTATTTGCTGGATTTTCAGAAGCTGGAGGGGGACCC
GTTCGGCTTCATGTCTCTCTGTTCGCAGGTGATAGAAGAGATTAAAGCAC
CCTTATATTGCGAGTAAGTCCAGAATCAGATTTATTTGCTGGATTTTCAG
AAGCTGGAGGGGGACCCGTTCGGCTTCATGTCTCTCTGTTCGCAGGTGAT
AGAAGAGATTAAAGCACCCTTATATTGCGAGTAA
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