mRNA_M-pyrifera_M_contig79141.18582.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79141.18582.1
Unique NamemRNA_M-pyrifera_M_contig79141.18582.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A812XAI2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XAI2_9DINO)

HSP 1 Score: 120 bits (300), Expect = 1.090e-32
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            IR LG VLQLVDEE+LE GG S QKICM+A+ YHN+AV H+ L Q ++AC+ SQNARRLARL+LSY+N++++ FE TH AALE L
Sbjct:   58 IRCLGHVLQLVDEERLETGGASAQKICMVAVCYHNVAVEHLALHQPQEACVDSQNARRLARLSLSYSNRYLRHFETTHAAALEAL 142          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A5A8CW97_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW97_CAFRO)

HSP 1 Score: 110 bits (274), Expect = 5.350e-28
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    4 RTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            RT+G+VLQ+V+ +KLE  G SPQ++C++A+ YHN+AV HI  G GEDAC+ASQ+ARR+ARL L  + ++   FEATH AAL QL
Sbjct:  130 RTIGKVLQMVEADKLEGEGASPQRLCLVAVAYHNVAVEHIAAGHGEDACVASQSARRVARLCLGLSGRYAPSFEATHAAALAQL 213          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A7S4DBW1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBW1_HETAK)

HSP 1 Score: 104 bits (260), Expect = 9.440e-27
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            +R LGQVL LV+  +L+ GG SPQK+C++A+ YHNIAV  + L     AC ASQNARRLARL LSY+N+++K FEATH  AL +L
Sbjct:   51 LRCLGQVLHLVEAGRLDVGGQSPQKLCLVAVAYHNIAVEQLALRHVAGACTASQNARRLARLCLSYSNRWLKNFEATHKIALAEL 135          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A5A8DQP7_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQP7_CAFRO)

HSP 1 Score: 110 bits (274), Expect = 1.880e-26
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    4 RTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            RT+G+VLQ+V+ +KLE  G SPQ++C++A+ YHN+AV HI  G GEDAC+ASQ+ARR+ARL L  + ++   FEATH AAL QL
Sbjct:  381 RTIGKVLQMVEADKLEGEGASPQRLCLVAVAYHNVAVEHIAAGHGEDACVASQSARRVARLCLGLSGRYAPSFEATHAAALAQL 464          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A6H5J7C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.510e-26
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            +R LGQVL +V E KL+ GG SPQK+C++AI YHN+AV  ++L    +AC++SQNARRLARL LSY+N+++  FE TH  AL +L
Sbjct:   85 LRCLGQVLAMVQEGKLDVGGNSPQKLCLVAICYHNMAVEQLILRHAGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAEL 169          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: D8LGQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 8.020e-26
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            +R LGQVL +V E KL+ GG SPQK+C++AI YHN+AV  ++L    +AC++SQNARRLARL LSY+N+++  FE TH  AL +L
Sbjct:  122 LRCLGQVLAMVQEGKLDVGGNSPQKLCLVAICYHNMAVEQLILRHAGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAEL 206          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A7S1U6F4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6F4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.410e-26
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            IR LGQ+L LV++ KL+ GG +PQK+C++A+TYHNIAV  + L    +AC++SQNARRLARL LSY+N+F+ QF+ TH AAL  L
Sbjct:  786 IRCLGQILTLVEDRKLDIGGLAPQKLCLVAVTYHNIAVEQLALRHVSEACISSQNARRLARLCLSYSNRFISQFDRTHRAALADL 870          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A7S2WRN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRN3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.910e-24
Identity = 42/85 (49.41%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            I+ + Q+LQ+V++E+L+ GGT+ QKIC++A+ YHNI +  I + +  +AC++SQN RRLARL+LSY N+++  FE+TH  AL +L
Sbjct:   55 IKCMAQILQMVEDERLQIGGTNAQKICLIAVAYHNITIEQIFMRRPAEACVSSQNGRRLARLSLSYANRWINNFESTHKFALRKL 139          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A7S2AIR5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIR5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.090e-23
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAG-GTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            IR L QVL +V+  +LE G G  PQK+C++A+ YHNIAV  ++L    +AC++SQNARRLARL LSY+N+++K FE TH  AL +L
Sbjct:   43 IRCLAQVLAMVESGQLEVGQGQQPQKLCLIAVCYHNIAVEQLILRHVPEACISSQNARRLARLCLSYSNRWIKSFEYTHQVALGEL 128          
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Match: A0A2R5GTB3_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTB3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.160e-23
Identity = 46/85 (54.12%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDACLASQNARRLARLALSYTNKFMKQFEATHVAALEQL 255
            I+ L Q+L +VD+E+L+ GGT+ QKICM+A+ YHNIAV  ++L +  +AC++SQNARRLARL+LS+ N+++  FE TH  AL++L
Sbjct:  308 IKCLAQILDMVDDERLQVGGTNAQKICMVAVCYHNIAVEQLVLRRPAEACVSSQNARRLARLSLSFANRWINWFERTHQYALQRL 392          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79141.18582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812XAI2_9DINO1.090e-3265.88Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A5A8CW97_CAFRO5.350e-2858.33Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S4DBW1_HETAK9.440e-2758.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5A8DQP7_CAFRO1.880e-2658.33Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A6H5J7C3_9PHAE3.510e-2656.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGQ9_ECTSI8.020e-2656.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1U6F4_9STRA8.410e-2658.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WRN3_9STRA1.910e-2449.41Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S2AIR5_9STRA1.090e-2354.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2R5GTB3_9STRA1.160e-2354.12Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79141contigM-pyrifera_M_contig79141:2..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D8LGQ9
Hectar predicted targeting categoryother localisation
EggNOG OGs29KZ4@1,2RU8C@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.472713-CDS-M-pyrifera_M_contig79141:1..2561622816694.472713-CDS-M-pyrifera_M_contig79141:1..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79141 2..256 +
1692278124.0350363-CDS-M-pyrifera_M_contig79141:1..2561692278124.0350363-CDS-M-pyrifera_M_contig79141:1..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79141 2..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79141.18582.1prot_M-pyrifera_M_contig79141.18582.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79141 2..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79141.18582.1

>prot_M-pyrifera_M_contig79141.18582.1 ID=prot_M-pyrifera_M_contig79141.18582.1|Name=mRNA_M-pyrifera_M_contig79141.18582.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
IRTLGQVLQLVDEEKLEAGGTSPQKICMLAITYHNIAVVHILLGQGEDAC
LASQNARRLARLALSYTNKFMKQFEATHVAALEQL
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mRNA from alignment at M-pyrifera_M_contig79141:2..256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79141.18582.1 ID=mRNA_M-pyrifera_M_contig79141.18582.1|Name=mRNA_M-pyrifera_M_contig79141.18582.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig79141:2..256+ (Macrocystis pyrifera P11B4 male)
ATCCGTACTCTTGGACAAGTACTTCAACTTGTTGATGAAGAAAAACTGGA AGCAGGTGGAACTTCACCTCAAAAGATTTGTATGCTCGCAATCACCTACC ATAACATTGCAGTAGTGCATATTCTGCTTGGACAAGGAGAAGATGCTTGT CTTGCTTCTCAAAATGCTCGTCGCCTTGCCCGCCTTGCACTATCATACAC CAACAAATTTATGAAACAATTTGAGGCAACACATGTCGCAGCTCTAGAAC AACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79141:2..256+

>mRNA_M-pyrifera_M_contig79141.18582.1 ID=mRNA_M-pyrifera_M_contig79141.18582.1|Name=mRNA_M-pyrifera_M_contig79141.18582.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig79141:2..256+ (Macrocystis pyrifera P11B4 male)
ATCCGTACTCTTGGACAAGTACTTCAACTTGTTGATGAAGAAAAACTGGA
AGCAGGTGGAACTTCACCTCAAAAGATTTGTATGCTCGCAATCACCTACC
ATAACATTGCAGTAGTGCATATTCTGCTTGGACAAGGAGAAGATGCTTGT
CTTGCTTCTCAAAATGCTCGTCGCCTTGCCCGCCTTGCACTATCATACAC
CAACAAATTTATGAAACAATTTGAGGCAACACATGTCGCAGCTCTAGAAC
AACTTATCCGTACTCTTGGACAAGTACTTCAACTTGTTGATGAAGAAAAA
CTGGAAGCAGGTGGAACTTCACCTCAAAAGATTTGTATGCTCGCAATCAC
CTACCATAACATTGCAGTAGTGCATATTCTGCTTGGACAAGGAGAAGATG
CTTGTCTTGCTTCTCAAAATGCTCGTCGCCTTGCCCGCCTTGCACTATCA
TACACCAACAAATTTATGAAACAATTTGAGGCAACACATGTCGCAGCTCT
AGAACAACTT
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