mRNA_M-pyrifera_M_contig7910.18576.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7910.18576.1
Unique NamemRNA_M-pyrifera_M_contig7910.18576.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: D8LC26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC26_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 5.690e-120
Identity = 171/183 (93.44%), Postives = 178/183 (97.27%), Query Frame = 3 
Query:   36 MKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI 584
            MKTLLATRYV IPEGV +D KSRVVTV GPRGEL+QSFKHLNLD+QK+G NKLRVDLWFGNRKQLACIRT+CSHVENMITGVTKGYLYKMRFCYAHFPINVSITG+TVEIRNFLGEKRVRRVELAPGVDYVRT+DVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI
Sbjct:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A836CAK5_9STRA (Ribosomal protein L6, alpha-beta domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK5_9STRA)

HSP 1 Score: 298 bits (763), Expect = 2.730e-99
Identity = 145/184 (78.80%), Postives = 163/184 (88.59%), Query Frame = 3 
Query:   36 MKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKA-GSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI 584
            MKT+LATRY++IPEGV +D KSRVV+V+GPRG L ++FKHLNLD+QKA G  KLRVDLWFGNRKQLACIRTVCSH+EN+ITGVTKG+LYKMRFCYAHFPINV++T RTVEIRNFLGEKRVRRV L  GVDYVR+  +KDQIELSGNDI  VS  AARI Q+ +VK KDIRKFLDGIYVSEK NI
Sbjct:    1 MKTVLATRYIDIPEGVKVDVKSRVVSVEGPRGSLTRNFKHLNLDIQKADGGKKLRVDLWFGNRKQLACIRTVCSHIENLITGVTKGFLYKMRFCYAHFPINVTLTDRTVEIRNFLGEKRVRRVVLCDGVDYVRSTTIKDQIELSGNDIADVSNMAARISQACTVKNKDIRKFLDGIYVSEKTNI 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A7S2XV97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV97_9STRA)

HSP 1 Score: 293 bits (749), Expect = 3.540e-97
Identity = 139/181 (76.80%), Postives = 165/181 (91.16%), Query Frame = 3 
Query:   33 TMKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 575
            +MKT+LATR+VEIP+GV L+ K+R V+V+GPRG+L ++FKH +LDM+  G NKLRVDLWFGNRKQLACIRT+CSH+ENMITGVTKG+LYKMRF YAHFPINV++  RTVEIRNFLGEKRVRRVEL  GV YVRT++VKDQIEL+GND+ AVS+TAA+IQQST+VK KDIRKFLDGIYVS+K
Sbjct:    7 SMKTILATRFVEIPDGVQLNVKARTVSVEGPRGKLERAFKHQSLDMRLVGKNKLRVDLWFGNRKQLACIRTICSHIENMITGVTKGFLYKMRFVYAHFPINVTLVDRTVEIRNFLGEKRVRRVELMEGVTYVRTSNVKDQIELTGNDLTAVSLTAAQIQQSTTVKNKDIRKFLDGIYVSQK 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: W7TGP7_9STRA (60s ribosomal protein l9 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGP7_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.560e-92
Identity = 138/191 (72.25%), Postives = 161/191 (84.29%), Query Frame = 3 
Query:   36 MKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNK--------LRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI 584
            MK +LAT+ V IPEGV L  KSR VTVKGPRGEL ++FKHLN+  +  G NK        L+VDLWF NRKQLA IRTVCSH+EN++TGVTKG+LY+MRF YAHFPINVS+T +TVE+RNFLGEKRVRRVEL PGV+YVR++DVKDQIEL GND+ AVS+TAARIQQ T+VKRKDIRKFLDGIYVS+K +I
Sbjct:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A7S2GU27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GU27_9STRA)

HSP 1 Score: 279 bits (714), Expect = 6.830e-92
Identity = 128/184 (69.57%), Postives = 163/184 (88.59%), Query Frame = 3 
Query:   36 MKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIE 587
            MKT+LA+R +EIPEG+ +  K+R VTVKGPRGEL ++FKH+++D++K GS  +RVD+WF  R+QLAC+RT+CSH++NM  GVT+G+LYKMRF Y+HFPINV+++G TVEIRNFLGEKRVR+VEL  GV+YVR+ADVKDQIELSGNDI AVS+TAARIQQ+T+++ KD+RKFLDGIYVSEK  IE
Sbjct:    1 MKTVLASRSIEIPEGIDVTIKARNVTVKGPRGELTRNFKHIDMDLKKVGSKFIRVDVWFATRQQLACVRTICSHIDNMFVGVTQGFLYKMRFVYSHFPINVALSGNTVEIRNFLGEKRVRKVELLEGVNYVRSADVKDQIELSGNDIAAVSLTAARIQQATNIRHKDLRKFLDGIYVSEKGPIE 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A7R9W890_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W890_9STRA)

HSP 1 Score: 277 bits (708), Expect = 6.160e-91
Identity = 128/186 (68.82%), Postives = 156/186 (83.87%), Query Frame = 3 
Query:   30 STMKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIE 587
            +TMKT+LA+R +EIP+GV  +  +R VT+KGPRG L + FKH+++D++K G   +RVD+WF NRKQLAC+RT+CSH+ENM  GVT+G+ YKMRF Y+HFPINVS+ G+TVEIRNFLGEKRVR+VEL  GV YVRTADVKDQIELSGNDI  VS+TAARIQQ T+   KD+RKFLDGIYVSEK  IE
Sbjct:    1 ATMKTVLASRTIEIPDGVEFEVTARKVTIKGPRGTLTREFKHIDMDLRKVGKKFVRVDIWFANRKQLACVRTICSHIENMFVGVTQGFCYKMRFVYSHFPINVSLNGKTVEIRNFLGEKRVRKVELCDGVQYVRTADVKDQIELSGNDIAMVSLTAARIQQCTNTTNKDLRKFLDGIYVSEKGKIE 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A7S1U0E8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0E8_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.070e-89
Identity = 137/185 (74.05%), Postives = 152/185 (82.16%), Query Frame = 3 
Query:   30 STMKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI 584
            S M+ +LATR V IPEGV ++ K R VTV GPRG L + F HLN+DMQK   ++L+VDLWFG  KQ ACIRTVCSHVENMITGVTKG+LYKMRFCYAHFPI V+I  R VEIRNFLGEKRVRRV L  GVD VRT +VKDQIELSGNDI AVS+TAARIQQ+T V+ KDIRKFLDGIYVSEK  I
Sbjct:   12 SKMRQILATRSVAIPEGVTVEAKCRTVTVTGPRGSLTRKFGHLNVDMQKISDSELKVDLWFGTLKQRACIRTVCSHVENMITGVTKGFLYKMRFCYAHFPIIVAIEQRNVEIRNFLGEKRVRRVALLDGVDAVRTDNVKDQIELSGNDIVAVSLTAARIQQATRVRNKDIRKFLDGIYVSEKTTI 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A7S1BA91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BA91_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.960e-89
Identity = 125/185 (67.57%), Postives = 161/185 (87.03%), Query Frame = 3 
Query:   33 TMKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIE 587
            TMKT L+++ + IP+GV +D   RVVTVKGPRG L Q+FKH+N+D++K  +  LRV+LW+  RKQLAC+RT+CSH+ENM+TGVT+G++YKMRF Y+HFPINV+++G  VEIRNFLGEKRVR+V+L PGV +VRTADVKDQIELSGNDI AVS+T A+IQQ+T+V++KD+RKFLDGIYVSEK  I+
Sbjct:    1 TMKTKLSSQSLAIPDGVEVDVSCRVVTVKGPRGSLTQAFKHVNMDIRKLNAKYLRVELWWATRKQLACVRTICSHIENMMTGVTRGFIYKMRFVYSHFPINVNLSGENVEIRNFLGEKRVRKVQLLPGVTFVRTADVKDQIELSGNDINAVSLTCAQIQQATNVRKKDLRKFLDGIYVSEKGAID 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A7S2RBQ4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RBQ4_9STRA)

HSP 1 Score: 270 bits (690), Expect = 3.110e-88
Identity = 126/180 (70.00%), Postives = 152/180 (84.44%), Query Frame = 3 
Query:   36 MKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 575
            MKT+LA+R +EIPEG  ++ KSR V V GPRG L + FKH+N+D+++ G   +RVDLWF NRK+LAC+RTVCSH+ENM  GV +GYLYKMRF Y+HFPINV++ G  VEIRNFLGEKRVR+V+L PGV YVR+ DVKDQIELSGNDI  VS+TAA+IQQSTSV+ KD+RKFLDGIYVSEK
Sbjct:    1 MKTVLASRTIEIPEGTEVEIKSRHVKVTGPRGVLERDFKHVNMDVRRCGEKNIRVDLWFANRKELACVRTVCSHIENMFVGVNQGYLYKMRFVYSHFPINVTLAGENVEIRNFLGEKRVRKVKLGPGVTYVRSDDVKDQIELSGNDIALVSLTAAQIQQSTSVRHKDLRKFLDGIYVSEK 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Match: A0A7R9YBB6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBB6_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.620e-87
Identity = 131/183 (71.58%), Postives = 150/183 (81.97%), Query Frame = 3 
Query:   36 MKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGSNKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNI 584
            M+ +L++R V IPEGV ++ K R VTV GPRGEL + F HL +DMQ   ++ L+VDLWFG  KQ ACIRTVCSH+ENMITGVTKG+LYKMRFCYAHFPI V+I GR VEIRNFLGEKRVR+V L  GVD +RT  VKDQIELSGNDI AVS+TAARIQQ+T V+ KDIRKFLDGIYVSEK  I
Sbjct:    1 MRQILSSRLVSIPEGVTVEAKCRTVTVSGPRGELTRKFGHLKVDMQLVSADTLKVDLWFGTLKQRACIRTVCSHIENMITGVTKGFLYKMRFCYAHFPIIVAIEGRNVEIRNFLGEKRVRKVALMEGVDALRTESVKDQIELSGNDIVAVSLTAARIQQATRVRNKDIRKFLDGIYVSEKGTI 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7910.18576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC26_ECTSI5.690e-12093.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAK5_9STRA2.730e-9978.80Ribosomal protein L6, alpha-beta domain-containing... [more]
A0A7S2XV97_9STRA3.540e-9776.80Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TGP7_9STRA1.560e-9272.2560s ribosomal protein l9 n=2 Tax=Monodopsidaceae T... [more]
A0A7S2GU27_9STRA6.830e-9269.57Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7R9W890_9STRA6.160e-9168.82Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1U0E8_9STRA1.070e-8974.05Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1BA91_9STRA1.960e-8967.57Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2RBQ4_9STRA3.110e-8870.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9YBB6_9STRA2.620e-8771.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7910contigM-pyrifera_M_contig7910:3791..11122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score348.6
Seed ortholog evalue1.9e-93
Seed eggNOG ortholog2880.D8LC26
Preferred nameRPL9
KEGG koko:K02940
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003002,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007389,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009719,GO:0009892,GO:0009941,GO:0009955,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0097@1,KOG3255@2759
Ec32 ortholog descriptionRibosomal protein L6, alpha-beta domain
Ec32 orthologEc-20_004190.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons4
Model size892
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7910.18576.1prot_M-pyrifera_M_contig7910.18576.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7910 4078..11087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.1057684-UTR-M-pyrifera_M_contig7910:3790..40771622816694.1057684-UTR-M-pyrifera_M_contig7910:3790..4077Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7910 3791..4077 -
1692278123.7693632-UTR-M-pyrifera_M_contig7910:3790..40771692278123.7693632-UTR-M-pyrifera_M_contig7910:3790..4077Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7910 3791..4077 -
1622816694.1601331-UTR-M-pyrifera_M_contig7910:11087..111221622816694.1601331-UTR-M-pyrifera_M_contig7910:11087..11122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7910 11088..11122 -
1692278123.8339508-UTR-M-pyrifera_M_contig7910:11087..111221692278123.8339508-UTR-M-pyrifera_M_contig7910:11087..11122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7910 11088..11122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.116608-CDS-M-pyrifera_M_contig7910:4077..41871622816694.116608-CDS-M-pyrifera_M_contig7910:4077..4187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 4078..4187 -
1692278123.7836163-CDS-M-pyrifera_M_contig7910:4077..41871692278123.7836163-CDS-M-pyrifera_M_contig7910:4077..4187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 4078..4187 -
1622816694.1273293-CDS-M-pyrifera_M_contig7910:5926..60241622816694.1273293-CDS-M-pyrifera_M_contig7910:5926..6024Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 5927..6024 -
1692278123.796565-CDS-M-pyrifera_M_contig7910:5926..60241692278123.796565-CDS-M-pyrifera_M_contig7910:5926..6024Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 5927..6024 -
1622816694.1380153-CDS-M-pyrifera_M_contig7910:7655..78251622816694.1380153-CDS-M-pyrifera_M_contig7910:7655..7825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 7656..7825 -
1692278123.8069472-CDS-M-pyrifera_M_contig7910:7655..78251692278123.8069472-CDS-M-pyrifera_M_contig7910:7655..7825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 7656..7825 -
1622816694.1489966-CDS-M-pyrifera_M_contig7910:10895..110871622816694.1489966-CDS-M-pyrifera_M_contig7910:10895..11087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 10896..11087 -
1692278123.817692-CDS-M-pyrifera_M_contig7910:10895..110871692278123.817692-CDS-M-pyrifera_M_contig7910:10895..11087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7910 10896..11087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7910.18576.1

>prot_M-pyrifera_M_contig7910.18576.1 ID=prot_M-pyrifera_M_contig7910.18576.1|Name=mRNA_M-pyrifera_M_contig7910.18576.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
MKTLLATRYVEIPEGVGLDTKSRVVTVKGPRGELIQSFKHLNLDMQKAGS
NKLRVDLWFGNRKQLACIRTVCSHVENMITGVTKGYLYKMRFCYAHFPIN
VSITGRTVEIRNFLGEKRVRRVELAPGVDYVRTADVKDQIELSGNDIQAV
SMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIEAPAES*
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mRNA from alignment at M-pyrifera_M_contig7910:3791..11122-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7910.18576.1 ID=mRNA_M-pyrifera_M_contig7910.18576.1|Name=mRNA_M-pyrifera_M_contig7910.18576.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7332bp|location=Sequence derived from alignment at M-pyrifera_M_contig7910:3791..11122- (Macrocystis pyrifera P11B4 male)
CACCACCCTGGGGCTAGCACCAACGTCCTTCCACCATGAAGACCCTGTTG
GCCACGCGTTATGTGGAAATCCCCGAAGGCGTGGGACTCGACACGAAGTC
GCGTGTCGTCACCGTGAAGGGACCCCGCGGAGAGCTCATCCAGAGCTTTA
AGCACCTTAACCTCGACATGCAAAAGGCGGGTTCGAACAAGCTGCGTGTG
GACCTGTGGTTCGGCAACCGGAAGCAGGTCAGTGGGCGCGGGCGACTCGT
TCACGCCACTCCAGCTTGCTCTGCTGCGGGAGATGCGTGTGCTCATACTG
CAAGCTTGGTTTGTTGGTCGATGCACAGCTTGGTTTTTGGTGATTTTGCG
TCTGTGTTGTGTAGAGAGACGTCTTGTTTTTCTCCTTATTTTCGAGTATA
TGGATCTGTGTGTGGAGAGAGACTTCCGGTGCCGCAAGGCTTTGGTCCTA
CGATTGGTGGACGGCCGCTCTCTTTGTCACGGGGACGCATCCCCGGGTTT
GCGGTTGAGCACCTATACATATACGTGTGTGGGCTGGGGAAGAGCCGTAC
TGAAGTTTGTGGGGTCACATATTTTCCTTGCACCTGTTGCAACTCTTACC
TAGTACATTATATCCCAGGGACAACAAAGAAGGGTATGGTACTTGTGGTA
CTTGTACGTGGAAGTCTGGGCCTTGAATCCACCCCGAAGAGATTGACTTG
AAAATTATGTCCATCTGTTACTTACCAGAGTACTGCTGCTCTGCCTTTGG
TTTGTGAGACATGTGACCTACGCTGGATTTACCGACAAAACGTTTTGTTG
CTCGCAAGAGAGTCACGCGATGCTGGCCTGGAGACACCTCCCCCTTTTCC
CCTTCGATGTTGGCCACCGCCACGTATCAAAGCTATACCAGGTGCAAGAG
TAGATTCGTGCAGCAGTAGATACACTGCATACCGCAGCGGCAAGATGGGT
AGTCGCAGTCACTGCGGAAGAACCATCCAGACACAAGCAGTGCTGTGCGC
CATTACAGAGAGTCCCGGCTAGGAGCTACGGATATGTTTGTGATTTCGTT
CCGTACCTTTCAGCGTACATGCTTGCTCGTGGCGACGACGAGTAGTTGAA
AGGTGTTGGTTTGGCTTCGGTACGTCTGTTGGTTAATTGGCCTGGCTGTA
CAGATACACCTGTTTCTTGCTCGGGGAGGTGCTGCCTTCTCGGTTTCACG
GATCCCCACGCAATCTACTGCTGCTCTCAAGCCGTTTTGTTTTCCTCTCA
TTGAAGCTATTCAACCTAACTTCCGAGGAACTCATCACCGTAAACATGGA
TATTATACGAACGCTTGTACATGGAGCAGTCTTAGTATAGCGGTGTAGAG
TCGTACGGCGTTCCTCGTACGAGAGAGAGAGAGTACCTGGAAGTCAGCAC
TGCGATACATTTGAGGCGTTGTCCCGCTCGACGTGAACGGCGGGTCACGC
GGCCAGGCAGCGAGTTGCCGATCAGCAGACAACAAGAGCATTACAGTAGC
GGCAGTAGCAGCGGTACGTACGGCAAAAATCGCGATTAGGAGGGAACATT
GGTAGTAATCAGGACCAAATAGGCCTCGTAAACCTTGCAGAATATGTTGT
ATTTTGTCTACGTGATGGGTCCTGATTGCTATGGCCCCCCGTAGCGCGTA
CCAGCTATATACGTTCATACAACATTGCCAAGCTTGGAAGCCCGCTAGGC
GCTACCTAGGTCAACCCACCTCTTTTTCACGTGAAAGGCGGGCGGGTGGA
TAGCCAACCATACTCTGGAGCTCAACGCTCCTTCATGATTGGACAACTCA
ACGCTTGTGATTGGACAAATATCGAGTATGTATCGCGTTGTTGCTATACG
GCTCGAAAGTTCTGTGTCGCCGCGTATTCCACGCGCCTTCTCGTGCGGAG
GTCGCGACTGCAATCCTTCTTCTTCTGCTGCTGGTGGTGGTGGTGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGAGGTGCTGCTGCTGCTGCCGTGACCGT
TGTAGTGCCTTTGCCGTTGCTGGCACATCTGTGTGTGTATTTGCGGCAAG
GAAAGCTGGCGTCAGATTCTACCGCTGCTATACTGGCGTGCTTCGCCTCC
AGCTTAGTACCGGTATACCATGCGTTGAGTGCGCGTACAGCAGTTACGAC
TTTCTGTAGCACTAAAGGTGCTTTTGGCGGTTTCGATACCTTCAGATGCC
TTGAGATAAGCGTGTATGGATATGTATGCCATCGGTGCGGCTAACTTGGA
GGCTCCGCGCAAGAACGGTATAGGTATGTACAAGCAGTATAGCACGCCAC
TGGGGCACACACCGCAGCAATGTTGGAAACCTTATTCCTCTCGTCCTTCG
TACGAGTTCTGAGATCTGAGCTGGGTAATTTACAAATGATAGATGGCTTG
AGGCGGCAAATTCACCGAGCAACGGTTACAAGGCCAAGCAGGCGCGACGT
GTGAAGATAGCGCATTACTGGCCGTGCCGATATTGTTCGTTTAAAGTATA
TACGTGCGGTAGAGCGGGCCTGCTTTGCCGCCGAACCCTCCCCTCTAACC
TGCTGTACTCTTCTAGACACCATGTATTGCGTTACAAATCGTAGTATGTT
CTATACCTGGCACCACTGTGTCCCCAAATTTAATTGCCTTTTGTGTTTGA
TTTTAATATAAAAGTGCTGTTTTTTTTTCGCGACAGGTGTATGTACTACA
CGGCCATAAAAACTGTGTTATCCCTTTCACAACTGCCGTCCCGTTTAGCG
GACCTACCACTCTAGGTTTAAGTAGTTTGTCCCCACTACGGAACTGCAGT
CGTACAAGGGTTGAACGCGCCCAACACTACGTACTGCCGTAGAGTTTCAT
TTTCAAGCACCCGATGCTTGACTATTTTGTAGTGTCTACGAGGTCCCCGC
CTACCCACCCCGTATTCGGCGTCGTGTCGAAACCCCATTACCGTTTCACA
CACGAAGCTCGCGAAAACACAGACACGCAACGACGCGTTCATGTGCTCAC
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCGCCGCTTTCTTTTTTGTTTTCGTGCTTCCCCCCCCCCCCCCTCCCCT
CCCCCNNNNNNNNNNCCTCTCCCCCCCTGCTTGGCCATCCTCTCGCCCCC
CCCCCACCTTTTCACACACCAAGCTCCCGAAAACACAGCCCCCCAACTCC
GCGTTCATGTCCTCCCGCCCCCCCCCCCCCGCCTCCCCCACCCCCGCTCC
CCTGCCCTCTCTGCGTCGTCTTTCATTGCCTTTCCGGTCCTGCCCAGCTC
GCATGCATCCGCACGGTGTGCTCGCACGTGGAGAACATGATCACGGGTGT
CACCAAGGGGTACTTGTACAAGATGCGCTTCTGTTACGCCCATTTCCCCA
TCAACGTGTCCATCACCGGGCGCACGGTGGAGATCCGCAACTTCCTCGGC
GAGAAGCGCGTCCGCAGGCAAGTGATTTTATCTGATCAAGGCGTTACGGC
AGGGGGAAAGGCGTTATTTGAATTATCATGCCAGGCAAAGTATTGGCCCC
TTGTAAGGAGAAACAACTAATCTCTAGAACGAGCAAGCCATAGAACCTTA
TTGTGACACCAAAAATCCTCAATAATATAATGCTATACTGCTGTATATAG
GTGATTCAGTGTAGCGTACGCTGCTGAGCACCACTTCTTACTACACTCTT
CTGACGTACGTACGTGGCGTCTTGCAAAAAGTGAGCTATTAGAGTGTTTG
CGATTTTTTTTTTTACTTTGACTCGTCTAAAATTCCTCCCGATGTAAAAT
TTTGAGGTAAATTTCTGAAAAATCGGCCGAAAAGTACCTTAGCGAAGTAA
GGATTTCAGCGAAAGTTACGGTAACTTTTGACTCTGTTTCATTGGCCTAC
ACGCACCGAGCATTATCCCGACGCAGAACGCAACTCAAATTTCGAAGGAT
CAAAACACCGAGCATCTTCTATGCCACCATGCTTCTTGCCGTACGCATCA
CGACAGCCGCTGGGAGCACAGAGACTCGAGAGGTGTAGCTTGGGTATAGC
GCGCACGAGCGGCGTTGGATTGTGCCGGCGGGCCGCCGCCGCTGCTACGG
TACACGCTTCCGCCGGCTTGGTGACGACGTGGAGAATGCGTCGTCCCAAA
AAATAATTTGTACTCACTCATACTCGTACTCGTACTCGTGCTCGTACAGA
GCGCGACAGAATGACAGCTCGTGTATCATTTCGATTTCACCATACTGCGG
CTGCAGCAGCAGCAGCAGCAACAGCCGCGGCGGTGGCGGTGGCGGCAGAG
CGGAGCGCGCCGGCGCTGTGACGTGTGCAGGCCGAGCGCAGCAGCAACAG
CAACAGCAATCCAAAAACTGAAGCTGGTTGGTGCTGGTGCTGACGCTGTT
TATTTTTGTTGCGTAAGCTGCCGCTTGCTGTTCTGCTGCTTGTAGTTGTG
GGATGGCAATGGTGGCTTCGCGGTCAACTCTGCCGCCGAACCGTTGCCGG
GCAGCCGCTGTTTTCTTTCCGTTCTTCTTTTGTTTGCCGTGTTGCCTCAC
CTCCCCACTTCCCTTCTTATTGTCGGAGGCGTCGCCTGCAGAATTTGGTT
TACCTCACTTGCAAACACACCGAAATCAGGAAGGGGAGGAAGTTCACTTT
TTTTAGGTGAAGTATTGTTTTTTTTTTTCATCTCTATCGCAAATACTCTA
TTAATAGCTCCATGTTACTACGGCTGTAGTTGATTATTTTTTCAATCGTG
GGCCTCTGCGTACCGCTGTATGTCACTTTTTAGTTTTTTTTTTGTTGGGT
ATGATGTCGAAACTGCCTCGTCATCGATATTGAGGTTGGTTTCTTGTTCC
TTCGGTTGTTTCATGGTTTTGTGGTCTACACCTTGCAGTTCGATACATGC
TCCTATTTTACCGCGCTGACCGCCAATTAGTGAATGCTGTGTACGACCGA
CCCGTTTTACTGAAGATGCCCTCTTCTCTCCCCCCCTTTCCTCTCCTCCT
TTGGTCGGTCTGTTTTTGTTTTGTTTTGCTGTTTGTTTCCGTATCGGTAC
ATTTTTGCTGCCATTTTCGGTTGGTCGTGGGTTGTGATTGTTGCACAGGG
TGGAGCTCGCCCCTGGAGTCGATTACGTGCGCACGGCGGACGTGAAGGAC
CAGATCGAGCTGAGCGGCAACGACATCCAGGCGGTTTCCATGACGGGTAA
GAGGCTTTTTTGTGTAACAAGGGGGGAGAGAGAGAGAGGCAAGGAGAGAG
AAATAGTTTTTTTTTTTTTAAGGTGTTCATATTTCCGGCAGCTAGCTCGC
TACCCCTACTAGCCTGCACCGGTGTTATGGGCGGCGAACGGCTACAACTC
GAAGTAGCGTGGCATACACCTGGCGGTGTATAAACGGGGTGCCGTCAAGA
TCTTCCGTATATTTTGTTGTTCATATGTTTTTTCGTTACCGTGTTGTGTC
GTGCACACGTCTTAATTGAAACAGCGCCGAAGGGACGGCTCTATCTACGG
CGTCTTTTGTTTGTTTTGTGTCGTGTGTTCCTTGCCGGGCGACGCGGTGC
AAGCTTGAAAGAATACTACTCGAGTTTTATTTTATTGTATCCCCTTTTTA
TATTGTGTGCAGGCAGCGGTATTCTTCCGGTAGTTATAGCGGAGCAGGCC
ATCAGTATTTGTCCTCGTCGTGTACTATCATGGGAGTAGCCTGTAAACGA
CGAAATTGCGAGTGCTTTTGGTAGGGGCAACTTTTGATGTTCCTTCTTTG
GATTGATTGAGTATGAGCTTCACGCTACGCGTACGGGTGCGGCGACATGT
TTGAATCACACTATTACGGGGAACCATATTAAATACGACCTAGGGTACAC
ACGAAAACCTGTGTATTTACCTATTTTTACTCGCATTATTTGGTCCTATT
TACTATGTCCCCCGTAATATCTGCAATAGAAGTTGAAAGGTTTTTGAGCA
GGGTCAATGGGTAAGCGTCGCGACTTATGATGGCACCCGGCCACGGTTTT
TTTCCGCTGACTAGCGCTGTCATTGATTGCTACACGTGTCATGTAGGTTC
TTGCCCCGCGAGAGTGTCTCGACAAAATCGTAGCAGCTTTCCATCTTGGT
GCGCGCCGTGGTAGCGTTCTCTTCGTAGATGTCTTTCGCTGCCGTCGTCT
CTCTTGTGTAGACGGGCGCGAAGTCATACACCGTGTACTGCATCCGGAAA
TGTATGGACGGTTTTAGTGTTCCACGTCAACACCTCAAATCGGCCCTAAA
CGTTTCGGAATAGGGTACCTGTCAAATTTTTTTTCGTGTTGGGTTGGTGT
TGGCCTCGGAGAAAGGCTGCTGCGGTTCGGCAGGCAGATATGTTCGTCAG
CGCTAGTAGATCCAGAGATACTGAATGGCCAGGTAGTTTTGGTGGCAGAC
GCCCTAGTCGTGGTGGACAGTCTTTGTTTGCTTCGTGTAGTGGTCTAGAG
ATCACGGGGACACACCGATTGGCTCGATTGACCCTGTTGACGTTCGTGGC
CGTCGGGATCTCCAGCCGGAGTGATCCCAAACCAACGGAAGCCCTGATTG
AGGCCCTTGCGAGCTAGTGAGTATGTATGATGTCTCGACTTTTGTAGTAG
CGCAGTGTGCAGAAACCTAAATTTGACTGTAATTCCAAGTGAATTATCCC
CAGAAAGGGATTGCAGTCCTATCCCCTCGCCTGCCCTGCCATCTTTTCAC
GGCCGTGTATCCTACAGGCACTCTCCACCCTATAGTCCTGCCCCTGCTCA
GCGAAACCGAAACTTGGGCTAATTTTTGTCCGCGTAGTTGATACTTGCGA
CTGGACTGTGACGGAATAAAAAAGGTCTGCGGCTGTGTGTACCTTTCGTT
TGACCCAGTTCCCCTTCCCACTCGCCGCTTTTTATTTTCTTTTCTTTTTC
GCGCCGTTTTCTTTTTTGTTTGTCGGTAATTCCAGCGGCACGCATCCAGC
AGTCGACGTCCGTGAAGCGGAAGGATATCCGTAAGTTCCTCGACGGTATC
TACGTCAGCGAGAAGCTTAACATCGAGGCCCCTGCCGAAAGTTAAGGCAC
TGAGATGCCCGAATGAAGGCGTCCTTCTCCTCGCCTGCAACTCCTGCGGA
GAACGTTATCGATGTCGGCTGTAGAGTTGGCTAAACGTGGGCGGGTGGAG
GGGGGAGGCTAGCGCTTTTTGTCGATCTCTGTTGGTATGGTCTTCTTCCA
GGGCTGCTATTGGTTATAGTTTGCTGGTGGTTTTGCACACGGGGCGACTG
TGCCGGCGTTTCTCTGGGAGGGGGTGGTCCCGCCTGTTAATGTTTCCGCC
TTCACGCGGATCCAGCAAAAGGGTGGTGGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7910:3791..11122-

>mRNA_M-pyrifera_M_contig7910.18576.1 ID=mRNA_M-pyrifera_M_contig7910.18576.1|Name=mRNA_M-pyrifera_M_contig7910.18576.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig7910:3791..11122- (Macrocystis pyrifera P11B4 male)
ATGAAGACCCTGTTGGCCACGCGTTATGTGGAAATCCCCGAAGGCGTGGG
ACTCGACACGAAGTCGCGTGTCGTCACCGTGAAGGGACCCCGCGGAGAGC
TCATCCAGAGCTTTAAGCACCTTAACCTCGACATGCAAAAGGCGGGTTCG
AACAAGCTGCGTGTGGACCTGTGGTTCGGCAACCGGAAGCAGATGAAGAC
CCTGTTGGCCACGCGTTATGTGGAAATCCCCGAAGGCGTGGGACTCGACA
CGAAGTCGCGTGTCGTCACCGTGAAGGGACCCCGCGGAGAGCTCATCCAG
AGCTTTAAGCACCTTAACCTCGACATGCAAAAGGCGGGTTCGAACAAGCT
GCGTGTGGACCTGTGGTTCGGCAACCGGAAGCAGCTCGCATGCATCCGCA
CGGTGTGCTCGCACGTGGAGAACATGATCACGGGTGTCACCAAGGGGTAC
TTGTACAAGATGCGCTTCTGTTACGCCCATTTCCCCATCAACGTGTCCAT
CACCGGGCGCACGGTGGAGATCCGCAACTTCCTCGGCGAGAAGCGCGTCC
GCAGCTCGCATGCATCCGCACGGTGTGCTCGCACGTGGAGAACATGATCA
CGGGTGTCACCAAGGGGTACTTGTACAAGATGCGCTTCTGTTACGCCCAT
TTCCCCATCAACGTGTCCATCACCGGGCGCACGGTGGAGATCCGCAACTT
CCTCGGCGAGAAGCGCGTCCGCAGGGTGGAGCTCGCCCCTGGAGTCGATT
ACGTGCGCACGGCGGACGTGAAGGACCAGATCGAGCTGAGCGGCAACGAC
ATCCAGGCGGTTTCCATGACGGGGTGGAGCTCGCCCCTGGAGTCGATTAC
GTGCGCACGGCGGACGTGAAGGACCAGATCGAGCTGAGCGGCAACGACAT
CCAGGCGGTTTCCATGACGGCGGCACGCATCCAGCAGTCGACGTCCGTGA
AGCGGAAGGATATCCGTAAGTTCCTCGACGGTATCTACGTCAGCGAGAAG
CTTAACATCGAGGCCCCTGCCGAAAGTTAACGGCACGCATCCAGCAGTCG
ACGTCCGTGAAGCGGAAGGATATCCGTAAGTTCCTCGACGGTATCTACGT
CAGCGAGAAGCTTAACATCGAGGCCCCTGCCGAAAGTTAA
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