mRNA_M-pyrifera_M_contig79044.18564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79044.18564.1
Unique NamemRNA_M-pyrifera_M_contig79044.18564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A8J7JWY6_9GAMM (DUF4214 domain-containing protein n=1 Tax=Pontibacterium sp. N1Y112 TaxID=2781979 RepID=A0A8J7JWY6_9GAMM)

HSP 1 Score: 101 bits (252), Expect = 1.580e-23
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   22 SEDGSLYRLYCAVFLRQPDPAGWAYWKSQ---SLSIWEIAELFGISPEFKNTYGEVDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQ 333
            +ED SL RLY AVF R PD  G+ YW  +    ++  ++ E F +SPEF NTY E+D  +F+  +Y NV++R  D +G+ YW  +LES TLSR ++V  FS+S EF+
Sbjct:  188 AEDQSLARLYKAVFDRMPDTDGFQYWSERLDTGVNFDDVVENFLVSPEFINTYSELDNSQFLDTLYNNVLNRDADSEGHQYWSGQLESNTLSRAQIVQNFSESSEFK 294          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A349AZN9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349AZN9_9ACTN)

HSP 1 Score: 101 bits (252), Expect = 4.390e-23
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   19 SSEDGSLYRLYCAVFLRQPDPAGWAYWK---SQSLSIWEIAELFGISPEFKNTYGEVDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQS 336
            S  +G++YRLY A FLR+PD  G+AYW    +    + +I+  F  S EF+  YG VD   F+ LVY NV+ R  D+ GYDYW+ ++  G L RG +++YFSDS+EF++
Sbjct:   40 SGAEGTIYRLYRAYFLREPDADGFAYWNGVYAMGYPLDKISNDFARSDEFQQRYGSVDNRRFLELVYHNVLGRDPDQSGYDYWLDQMNRGML-RGFVMIYFSDSDEFRT 147          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A1N6XQH8_9GAMM (Uncharacterized protein n=2 Tax=Marinobacterium stanieri TaxID=49186 RepID=A0A1N6XQH8_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 6.550e-22
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   22 SEDGSLYRLYCAVFLRQPDPAGWAYWKSQ---SLSIWEIAELFGISPEFKNTYGEVDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQS 336
            SEDG++YRLY AVF R PD AG+ YW  +    LS  +I + F  S EFK  Y + D + +VS +Y NV+ R  D +G  YW+  LE G   RG+++  FSDS EF++
Sbjct:  281 SEDGAVYRLYRAVFDRDPDEAGFKYWAGRLDHELSFEQIIDRFIDSGEFKTLYADADDQGYVSKLYNNVLEREPDEEGLRYWVGNLEEGRWDRGDVLARFSDSGEFKN 388          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A3S4GN15_9HYPH (Uncharacterized protein n=2 Tax=Devosia equisanguinis TaxID=2490941 RepID=A0A3S4GN15_9HYPH)

HSP 1 Score: 92.4 bits (228), Expect = 2.530e-20
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   31 GSLYRLYCAVFLRQPDPAGWAYWKSQ----SLSIWEIAELFGISPEFKNTYGEVDA---EEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQSRIHVDCD 357
            G  YRLY A F R PD  G  YW  +    ++S+  IA+ F  SPEF  T+G V+      FV L+YL+ + R  D +GY+YW+ +L++   +RG+L+ +FS+SEE Q ++    D
Sbjct:  155 GMAYRLYQAAFDRMPDAEGLTYWIGRLDTGNVSLAAIADSFIHSPEFVRTFGTVETVSNARFVELLYLHTLDRGADSEGYNYWVQRLDNNQTNRGDLLAFFSESEENQQQVAAQID 270          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A1E4DXB5_9HYPH (Uncharacterized protein n=1 Tax=Pelagibacterium sp. SCN 63-126 TaxID=1660123 RepID=A0A1E4DXB5_9HYPH)

HSP 1 Score: 92.4 bits (228), Expect = 9.840e-20
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   31 GSLYRLYCAVFLRQPDPAGWAYWKSQ----SLSIWEIAELFGISPEFKNTYGEVDA---EEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQSRIHVDCD 357
            G  YRLY A F R PD  G  YW  +    ++S+  IA+ F  SPEF  T+G V+      FV L+YL+ + R  D +GY+YW+ +L++   +RG+L+ +FS+SEE Q ++    D
Sbjct:  267 GMAYRLYQAAFDRMPDAEGLTYWIGRLDTGNVSLAAIADSFIHSPEFVRTFGTVETVSNARFVELLYLHTLDRGADSEGYNYWVQRLDNNQTNRGDLLAFFSESEENQQQVAAQID 382          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A349B7A4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B7A4_9ACTN)

HSP 1 Score: 91.3 bits (225), Expect = 1.870e-19
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   31 GSLYRLYCAVFLRQPDPAGWAYWKS---QSLSIWEIAELFGISPEFKNTYGEVDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQSR 339
            G++YRLY A FLR+P+ AG+ +W     Q   +  I+  F  S EF+  YG V   EF+  VY+NVM R  D  GY YW+ ++  G +SRG +++YFSDS EF+S+
Sbjct:  238 GTIYRLYRAYFLREPERAGYDHWLGAYRQGYRLDGISNDFARSTEFELRYGFVSNGEFLQRVYMNVMGRAADAKGYAYWMDQMNRG-MSRGFVMIYFSDSAEFRSK 342          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A1I7N1Z9_9HYPH (Uncharacterized protein n=1 Tax=Devosia crocina TaxID=429728 RepID=A0A1I7N1Z9_9HYPH)

HSP 1 Score: 90.5 bits (223), Expect = 4.460e-19
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   31 GSLYRLYCAVFLRQPDPAGWAYW----KSQSLSIWEIAELFGISPEFKNTYGE---VDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQSRI 342
            G  YRLY A F R PD  G  YW     S ++S+  IA+ F  SPEF  T+G    V  E+FV L+Y + ++R  D+ G DYW+ +L++   +RG+L+ +FS+SEE Q+R+
Sbjct:  253 GMAYRLYQAAFDRIPDAPGLEYWIGRLDSGNVSLTAIADSFIHSPEFIRTFGTKETVSNEKFVELLYTHTLARDFDQSGLDYWVERLDNNMTNRGDLLAFFSESEENQARV 363          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: UPI001B842337 (DUF4214 domain-containing protein n=1 Tax=Undibacterium fentianense TaxID=2828728 RepID=UPI001B842337)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-18
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   31 GSLYRLYCAVFLRQPDPAGWAYWKSQ---SLSIWEIAELFGISPEFKNTYGEVDAEE-FVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQSRI 342
            G  YRLY A F RQPD AG  YW  +    +S+  +A  F  S EF++ YG V +   F++ +Y NV+ R  D  GYDYW  KL SG +SR E+++ FS+S E Q++I
Sbjct:  251 GQAYRLYQAAFNRQPDLAGLGYWIEKLDDGMSLSRVAGEFYHSDEFRSLYGNVTSNATFITTLYQNVLHRAPDLGGYDYWNYKLNSGDMSRAEVLMSFSESAENQAQI 358          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: UPI001C62C0F7 (fibronectin type III domain-containing protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62C0F7)

HSP 1 Score: 90.1 bits (222), Expect = 1.300e-18
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   43 RLYCAVFLRQPDPAGWAYWKSQ---SLSIWEIAELFGISPEFKNTYGEVDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEF 330
            RLY A +LR PD  G  YW  Q    +S+  ++E F    EF+  YG +   EFV L+Y N++ RPG++ G D+W A+L+S   SRG +++ FS+S E+
Sbjct:  595 RLYLAYYLRTPDKGGLEYWVQQRNAGMSLTRVSEHFASLREFRERYGTLTNREFVELIYQNILGRPGEKSGVDFWTAQLDSRRRSRGWVMIGFSESSEY 693          
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Match: A0A1I7MXB8_9HYPH (Uncharacterized protein n=1 Tax=Devosia crocina TaxID=429728 RepID=A0A1I7MXB8_9HYPH)

HSP 1 Score: 89.0 bits (219), Expect = 1.580e-18
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   31 GSLYRLYCAVFLRQPDPAGWAYW----KSQSLSIWEIAELFGISPEFKNTYGE---VDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGELVVYFSDSEEFQSRIHVDCD 357
            G  YRLY A F R PD  G  YW     S + ++  IA+ F  SPEF  T+G    V   EFV L+Y + + R  D  GYDYW+ +L+S   +RG+L+ +FS+S+E Q+++    D
Sbjct:  248 GMAYRLYQAAFDRMPDAEGLEYWIGRLDSGNTNLAAIADSFIHSPEFIRTFGTEATVSNAEFVELLYQHTLDRGSDGPGYDYWVERLDSNQTNRGDLLAFFSESDENQAQVASQID 363          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79044.18564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J7JWY6_9GAMM1.580e-2345.79DUF4214 domain-containing protein n=1 Tax=Pontibac... [more]
A0A349AZN9_9ACTN4.390e-2344.95Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A1N6XQH8_9GAMM6.550e-2245.37Uncharacterized protein n=2 Tax=Marinobacterium st... [more]
A0A3S4GN15_9HYPH2.530e-2039.66Uncharacterized protein n=2 Tax=Devosia equisangui... [more]
A0A1E4DXB5_9HYPH9.840e-2039.66Uncharacterized protein n=1 Tax=Pelagibacterium sp... [more]
A0A349B7A4_9ACTN1.870e-1944.34Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A1I7N1Z9_9HYPH4.460e-1942.34Uncharacterized protein n=1 Tax=Devosia crocina Ta... [more]
UPI001B8423371.180e-1844.44DUF4214 domain-containing protein n=1 Tax=Undibact... [more]
UPI001C62C0F71.300e-1841.41fibronectin type III domain-containing protein n=1... [more]
A0A1I7MXB8_9HYPH1.580e-1840.52Uncharacterized protein n=1 Tax=Devosia crocina Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79044contigM-pyrifera_M_contig79044:548..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score93.6
Seed ortholog evalue6.7e-17
Seed eggNOG ortholog1357272.AVEO02000193_gene217
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4214)
EggNOG OGs1R62B@1224,1SZI0@1236,COG2340@1,COG2340@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.4969058-CDS-M-pyrifera_M_contig79044:547..9041622816693.4969058-CDS-M-pyrifera_M_contig79044:547..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79044 548..904 -
1692278123.57357-CDS-M-pyrifera_M_contig79044:547..9041692278123.57357-CDS-M-pyrifera_M_contig79044:547..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79044 548..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79044.18564.1prot_M-pyrifera_M_contig79044.18564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79044 548..904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79044.18564.1

>prot_M-pyrifera_M_contig79044.18564.1 ID=prot_M-pyrifera_M_contig79044.18564.1|Name=mRNA_M-pyrifera_M_contig79044.18564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
PGVSLNSSEDGSLYRLYCAVFLRQPDPAGWAYWKSQSLSIWEIAELFGIS
PEFKNTYGEVDAEEFVSLVYLNVMSRPGDRDGYDYWIAKLESGTLSRGEL
VVYFSDSEEFQSRIHVDCD
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mRNA from alignment at M-pyrifera_M_contig79044:548..904-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79044.18564.1 ID=mRNA_M-pyrifera_M_contig79044.18564.1|Name=mRNA_M-pyrifera_M_contig79044.18564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig79044:548..904- (Macrocystis pyrifera P11B4 male)
CCGGGCGTTTCACTGAACTCGAGTGAAGACGGTTCGCTTTATCGCCTCTA TTGTGCTGTTTTCCTGCGACAACCCGATCCTGCTGGGTGGGCGTACTGGA AGTCCCAGTCACTTTCTATCTGGGAGATTGCCGAACTGTTCGGTATTTCT CCTGAGTTTAAGAACACCTACGGAGAGGTTGACGCGGAAGAGTTTGTCTC GTTGGTGTATCTTAACGTGATGTCACGTCCGGGTGATCGGGACGGTTATG ACTACTGGATAGCAAAGCTCGAAAGTGGGACCCTGAGTAGGGGCGAGTTG GTAGTCTACTTTAGTGATTCGGAAGAGTTTCAAAGCCGTATTCATGTAGA TTGTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79044:548..904-

>mRNA_M-pyrifera_M_contig79044.18564.1 ID=mRNA_M-pyrifera_M_contig79044.18564.1|Name=mRNA_M-pyrifera_M_contig79044.18564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig79044:548..904- (Macrocystis pyrifera P11B4 male)
CCGGGCGTTTCACTGAACTCGAGTGAAGACGGTTCGCTTTATCGCCTCTA
TTGTGCTGTTTTCCTGCGACAACCCGATCCTGCTGGGTGGGCGTACTGGA
AGTCCCAGTCACTTTCTATCTGGGAGATTGCCGAACTGTTCGGTATTTCT
CCTGAGTTTAAGAACACCTACGGAGAGGTTGACGCGGAAGAGTTTGTCTC
GTTGGTGTATCTTAACGTGATGTCACGTCCGGGTGATCGGGACGGTTATG
ACTACTGGATAGCAAAGCTCGAAAGTGGGACCCTGAGTAGGGGCGAGTTG
GTAGTCTACTTTAGTGATTCGGAAGAGTTTCAAAGCCGTATTCATGTAGA
TTGTGATCCGGGCGTTTCACTGAACTCGAGTGAAGACGGTTCGCTTTATC
GCCTCTATTGTGCTGTTTTCCTGCGACAACCCGATCCTGCTGGGTGGGCG
TACTGGAAGTCCCAGTCACTTTCTATCTGGGAGATTGCCGAACTGTTCGG
TATTTCTCCTGAGTTTAAGAACACCTACGGAGAGGTTGACGCGGAAGAGT
TTGTCTCGTTGGTGTATCTTAACGTGATGTCACGTCCGGGTGATCGGGAC
GGTTATGACTACTGGATAGCAAAGCTCGAAAGTGGGACCCTGAGTAGGGG
CGAGTTGGTAGTCTACTTTAGTGATTCGGAAGAGTTTCAAAGCCGTATTC
ATGTAGATTGTGAT
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