mRNA_M-pyrifera_M_contig790.18558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig790.18558.1
Unique NamemRNA_M-pyrifera_M_contig790.18558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig790.18558.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 7.770e-99
Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 1 
Query:    1 EVEEKPSQIEGRGAFLKRGASKGTTVHTSVLPSSEFNDDFTIDQYDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNTKLCFGGAAPPDWYEPTQAGQA-VITSWYTCSLVTRRPVEAGEELTICYAKFP 438
            EVEEKPSQIEG GAFLKRGASKGTTVHTSVLPSSEF+DDFTI+QYDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPN +LCFGGAAPPDWYEPT+AGQA VITSWYTCSLVTRR VEAGEELTICYAKFP
Sbjct:  126 EVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFSDDFTIEQYDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYAKFP 272
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BLAST of mRNA_M-pyrifera_M_contig790.18558.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.120e-28
Identity = 61/142 (42.96%), Postives = 73/142 (51.41%), Query Frame = 1 
Query:   13 KPSQIEGRGAFLKRGASKGTTVHTSVLPSSEFNDDFTIDQYDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNTKLCFGGAAPPDWYEPTQAGQAVITSWYTCSLVTRRPVEAGEELTICYAKFP 438
            K S I G G F K    +G  V  ++LP       F    Y C  H+MH D    + IDPG   RGN+  C  D   R++RLLNHS SPN +L  G AA PDW+E    G A    WYTCS+     +E G ELTI YA  P
Sbjct:  768 KKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVGDAATPDWFEAI--GGAEYGPWYTCSIKALENIEKGVELTIKYAGAP 907
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig790.18558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBG8_9PHAE7.770e-9994.56SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFA9_9PHAE1.120e-2842.96SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig790contigM-pyrifera_M_contig790:18383..18820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.17609-CDS-M-pyrifera_M_contig790:18382..188201622816693.17609-CDS-M-pyrifera_M_contig790:18382..18820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig790 18383..18820 -
1692278123.4024591-CDS-M-pyrifera_M_contig790:18382..188201692278123.4024591-CDS-M-pyrifera_M_contig790:18382..18820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig790 18383..18820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig790.18558.1prot_M-pyrifera_M_contig790.18558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig790 18383..18820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig790.18558.1

>prot_M-pyrifera_M_contig790.18558.1 ID=prot_M-pyrifera_M_contig790.18558.1|Name=mRNA_M-pyrifera_M_contig790.18558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
EVEEKPSQIEGRGAFLKRGASKGTTVHTSVLPSSEFNDDFTIDQYDCCYH
VMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNTKLCFG
GAAPPDWYEPTQAGQAVITSWYTCSLVTRRPVEAGEELTICYAKFP
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mRNA from alignment at M-pyrifera_M_contig790:18383..18820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig790.18558.1 ID=mRNA_M-pyrifera_M_contig790.18558.1|Name=mRNA_M-pyrifera_M_contig790.18558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig790:18383..18820- (Macrocystis pyrifera P11B4 male)
GAAGTAGAGGAGAAGCCAAGCCAGATTGAAGGCCGCGGGGCGTTTCTCAA
GCGTGGCGCGAGCAAAGGCACGACAGTGCATACGTCGGTGTTGCCTAGCT
CCGAATTCAACGATGATTTTACGATCGACCAGTACGACTGCTGCTATCAT
GTGATGCATGGTGACAAGAACGGGGTGGTGTACATCGACCCAGGTGCCCT
TTTCCGAGGCAACTTGATGGGGTGCCTGGAGGACATGGGAAGTAGGGTGA
TCCGACTTTTAAACCACAGCAGCTCGCCTAATACCAAGCTATGTTTCGGC
GGAGCGGCCCCTCCTGACTGGTATGAACCAACGCAAGCCGGACAGGCAGT
GATTACGAGCTGGTACACGTGCTCACTCGTGACCCGTCGACCAGTAGAAG
CAGGGGAAGAGCTTACGATTTGCTATGCCAAGTTTCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig790:18383..18820-

>mRNA_M-pyrifera_M_contig790.18558.1 ID=mRNA_M-pyrifera_M_contig790.18558.1|Name=mRNA_M-pyrifera_M_contig790.18558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig790:18383..18820- (Macrocystis pyrifera P11B4 male)
GAAGTAGAGGAGAAGCCAAGCCAGATTGAAGGCCGCGGGGCGTTTCTCAA
GCGTGGCGCGAGCAAAGGCACGACAGTGCATACGTCGGTGTTGCCTAGCT
CCGAATTCAACGATGATTTTACGATCGACCAGTACGACTGCTGCTATCAT
GTGATGCATGGTGACAAGAACGGGGTGGTGTACATCGACCCAGGTGCCCT
TTTCCGAGGCAACTTGATGGGGTGCCTGGAGGACATGGGAAGTAGGGTGA
TCCGACTTTTAAACCACAGCAGCTCGCCTAATACCAAGCTATGTTTCGGC
GGAGCGGCCCCTCCTGACTGGTATGAACCAACGCAAGCCGGACAGGCAGT
GATTACGAGCTGGTACACGTGCTCACTCGTGACCCGTCGACCAGTAGAAG
CAGGGGAAGAGCTTACGATTTGCTATGCCAAGTTTCCGGAAGTAGAGGAG
AAGCCAAGCCAGATTGAAGGCCGCGGGGCGTTTCTCAAGCGTGGCGCGAG
CAAAGGCACGACAGTGCATACGTCGGTGTTGCCTAGCTCCGAATTCAACG
ATGATTTTACGATCGACCAGTACGACTGCTGCTATCATGTGATGCATGGT
GACAAGAACGGGGTGGTGTACATCGACCCAGGTGCCCTTTTCCGAGGCAA
CTTGATGGGGTGCCTGGAGGACATGGGAAGTAGGGTGATCCGACTTTTAA
ACCACAGCAGCTCGCCTAATACCAAGCTATGTTTCGGCGGAGCGGCCCCT
CCTGACTGGTATGAACCAACGCAAGCCGGACAGGCAGTGATTACGAGCTG
GTACACGTGCTCACTCGTGACCCGTCGACCAGTAGAAGCAGGGGAAGAGC
TTACGATTTGCTATGCCAAGTTTCCG
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