mRNA_M-pyrifera_M_contig78970.18555.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78970.18555.1
Unique NamemRNA_M-pyrifera_M_contig78970.18555.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A7S1C8U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8U9_9STRA)

HSP 1 Score: 300 bits (768), Expect = 3.960e-94
Identity = 152/286 (53.15%), Postives = 210/286 (73.43%), Query Frame = 1
Query:   10 VLAHIRDMVDRAPETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFVEDE 867
            V++HI  +V R P  +  E+KQFFC+Y +P+  K LKLE+LP++A+  NAG+IV EL+EYV+ VD E+AR AIRAIG + +R+P     V+ +L  L +LD D+++ +T+ VM+DLLR+YP KA EVVP+++R+LK++++P G+A+VIW++GEYG LI DAPY+LEPLIDN+  E + EVR ELLTAT+KLFFKR PEV  M+ RL    L    +++VHDRAL Y RLLR    EA AVIAGER P+  F E  +D  + +VF  EF+SLSV++ KP E F+ +E
Sbjct:  304 VMSHIVLLVRRQPGAYDDEFKQFFCRYNDPTPMKHLKLEVLPQVANADNAGEIVAELSEYVSDVDAEMARHAIRAIGQLVVRVPEAGGRVIETLLELNELDVDYVRGETVMVMQDLLRRYPSKATEVVPSMNRTLKKIDDPTGKASVIWMIGEYGHLIADAPYMLEPLIDNVGSEESVEVRCELLTATVKLFFKRAPEVQKMLGRLFKATLEGSNSAAVHDRALLYFRLLRRDIEEARAVIAGERKPITTFHEDREDPTKAKVFA-EFNSLSVVYGKPSEQFISEE 588          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A812T205_9DINO (BETAA-AD protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T205_9DINO)

HSP 1 Score: 271 bits (694), Expect = 9.290e-82
Identity = 140/296 (47.30%), Postives = 211/296 (71.28%), Query Frame = 1
Query:    7 IVLAHIRDMVDRAPETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLD--SDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDE---EPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCL-GDGTTSSVHDRALFYLRLLRLSPSEAEAVI-AGERP-PVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFVEDEF 870
            +VL H+  +V RAP  F SEYKQFFC+Y+EP+ ++++KL ILP +AD  N GDIV+EL+EY+ GVD ++A  A+ A+G+IA+ +P   D  +++L  +LDLD  +DW+ SQT  VM+ LLR+YP +A  V+P+LH++L+++ +P+GR+AV+W+LGEYG+++DDAPYLLE L++ + +   E    V+LELLT+TLKLFFKRPPEV   + +LL+  L  +   ++V DRAL Y RLL    + A +++ A ER  P+ AF+  +   V   +F  EFDSLS+++ KP  +F+ D+F
Sbjct:  308 VVLKHVESIVSRAPGVFNSEYKQFFCRYSEPTSAQSIKLRILPAVADTDNFGDIVSELSEYIGGVDSDVAAQAVVAVGNIALNVPAAVDTAIATLLEVLDLDMEADWVLSQTTMVMQSLLRRYPARASSVIPSLHKALRQVTDPDGRSAVVWMLGEYGEILDDAPYLLEELVEEVADGTVEVEVPVKLELLTSTLKLFFKRPPEVKPALGKLLSTVLEAEEEDAAVRDRALLYYRLLSTDRAAAASMVGASERKEPLGAFMPDLSPAVTAVIFS-EFDSLSIMYDKPSSEFIGDKF 602          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A7S3SC85_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SC85_9SPIT)

HSP 1 Score: 258 bits (660), Expect = 1.120e-81
Identity = 135/270 (50.00%), Postives = 183/270 (67.78%), Query Frame = 1
Query:   49 ETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFV 858
            E F  E+KQFFC+Y EPS  K +K++IL  +AD  +A  I+ EL+EYV  VD EI+R AIRAIG IA+R+P  A+ ++ SL  LL+LD D++ ++   VM+DL+RKYP +      A+ R +K + EPEG+ AV+W+LGEYG LI+DAPYLLEP+I+   EE +  VRLE+LTA +KLFF RPPE+  M+ RLL + + + +   V DRAL Y RLL  SP EA  VI   +  V  F E +D   +DRVF+ EF SLS ++R+P   FV
Sbjct:    7 EVFGPEFKQFFCRYNEPSYIKQVKIDILTALADSNSAEHIIGELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAELIVGSLTNLLELDIDYVSTEAAVVMKDLVRKYPQQFQRASGAVERCIKIVAEPEGKCAVLWILGEYGLLIEDAPYLLEPMINGFLEETSGNVRLEMLTAAVKLFFSRPPEMQKMLGRLLEKAVTEASHPDVKDRALLYYRLLEHSPEEARRVICAPKEVVEEFQEEMDQEQKDRVFD-EFGSLSTVYRQPASKFV 275          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A7S4RGM6_9DINO (AP complex subunit beta n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RGM6_9DINO)

HSP 1 Score: 270 bits (691), Expect = 3.960e-81
Identity = 142/289 (49.13%), Postives = 198/289 (68.51%), Query Frame = 1
Query:    1 SHIVLAHIRDMVDRAPET---FASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFV 858
            ++ VL HI+ +  R  E    F  ++KQFFC+Y EPS  K +K+EIL  +AD  +A  +V+EL+EYV  VD EI+R AIRAIG IA+R+P  A+ ++ SL +LL+LD D++ ++   VM+DL+RKYP +      A+ R +K + EPEG+ AV+W+LGEYG LI+DAPYLLEP+ID+  EEP+  VRLE+LTA +KLFF RPPE+ +M+ RLL + + + T   + DRAL Y RLL  +P EA  VI   +  V  F E +D   RDRVFE EF++LS ++R+P   FV
Sbjct:  304 AYTVLVHIQALCSRGGENLEVFGPDFKQFFCRYNEPSYIKTVKIEILTMLADAGSAEPVVSELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAEMIVGSLTSLLELDIDYVSTEAAVVMKDLVRKYPQQFQRASGAVERCMKIVSEPEGKCAVLWILGEYGLLIEDAPYLLEPMIDSFLEEPSGAVRLEMLTAAVKLFFCRPPEMQEMLGRLLEKAIQESTHPDMRDRALLYYRLLEHAPEEARRVICAPKEVVEEFQEEMDADARDRVFE-EFNTLSTVYRQPAAKFV 591          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A7S1KWR4_ALECA (AP complex subunit beta n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S1KWR4_ALECA)

HSP 1 Score: 270 bits (690), Expect = 1.640e-80
Identity = 142/289 (49.13%), Postives = 198/289 (68.51%), Query Frame = 1
Query:    1 SHIVLAHIRDMVDRAPET---FASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFV 858
            ++ VL HI+ +V R  E    F S++KQFFC+Y EPS  K +K+EIL  +AD  +A  IV EL+EYV  VD+EI+R AIRAIG IA+R+P  A+ ++ SL +LL+LD D++ ++   VM+DL+RKYP +      A+ R +K + EPEG+ AV+W+LGEYG LI+DAPYLLEP+ID   EEP+  VRLE+LTA +KLFF RPPE+  M+ RLL + + + T   + DRAL Y RLL  SP EA  V+   +  V  F E +D   RDRVF+ EF++LS ++++P   F+
Sbjct:  368 AYTVLVHIQALVSRGGENIEVFGSDFKQFFCRYNEPSYIKTVKIEILTWLADIGSAEPIVAELSEYVTDVDVEISRRAIRAIGKIAVRVPSTAELIVGSLTSLLELDIDYVSTEAAVVMKDLVRKYPQQFQRASGAVERCIKIVSEPEGKCAVLWILGEYGLLIEDAPYLLEPMIDGFLEEPSGAVRLEMLTAAVKLFFCRPPEMQHMLGRLLEKAIQESTHPDMRDRALLYYRLLEHSPEEARRVVCAPKEVVEEFQEEMDADARDRVFD-EFNTLSTVYKQPAAKFI 655          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A5A8CEC2_CAFRO (Adaptin_N domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CEC2_CAFRO)

HSP 1 Score: 269 bits (688), Expect = 2.960e-80
Identity = 150/310 (48.39%), Postives = 205/310 (66.13%), Query Frame = 1
Query:    1 SHIVLAHIRDMVDRAPETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKR-LEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNI-------------DEEPAS---------EVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERP-PVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFV 858
            ++++LAH++ +V+RAP  FA E+K FFC   EP+  + LKL +L  +A E  A  IV EL EYV GV+ +IAR A+ AIG+IA+RLP  A  V+ +L A+LD D+DW+ SQ + VM+ +LRKYPD A +V+PALH +L+    +PEGRAA +W++G++G LIDDAPYLLEPLID +             D E A+         +VRLELLTA +KLFF RPPE+  M+ RLL+ CL +G    V DRAL Y RLLR   + A+ V+    P  V  F+  V   VRD++F +EF++LSV++ KP EDFV
Sbjct:  314 TYVLLAHVKAIVERAPAVFADEFKTFFCALGEPTHVQELKLSLLALLATEGTAAPIVNELCEYVTGVNEDIARSALTAIGEIAVRLPGAATGVVRALIAMLDTDADWVCSQAVQVMQVVLRKYPDNAADVLPALHATLRTGATDPEGRAAAVWIIGQFGSLIDDAPYLLEPLIDAVVAAAGSDAPAPHDDSEAATALAEAAASVDVRLELLTAAVKLFFARPPEMQKMLARLLSACLVEGQDVGVRDRALLYFRLLRAGVAAAKEVVCAPGPVAVTEFLADVSSDVRDKIF-NEFNTLSVVYVKPPEDFV 622          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A7S3YIK4_9EUKA (AP complex subunit beta n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YIK4_9EUKA)

HSP 1 Score: 266 bits (681), Expect = 4.310e-80
Identity = 132/285 (46.32%), Postives = 197/285 (69.12%), Query Frame = 1
Query:    1 SHIVLAHIRDMVDRAPETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDF 855
            S+ VL+H+R +V RAP  F  ++K F+C+Y +P+C K LK ++L  +A+E N   ++ EL+EY+  VD EIA+ AI++I  I++++    D  +  L + LDL +D++ ++T  V++D+LR++PD+  +V+P+L   LK +E PEGR AVIWL+GEYG  IDDAPY+LE LIDN  +E +S VR ELLTAT+KLFFKRPPE+  M+ RLL   + D +   V D+ALFY RLLR    EA  V+  E+  V +F EA D+ ++D++F+ EF++LSV++  P   F
Sbjct:  298 SYTVLSHLRVLVSRAPTIFHQDHKHFYCRYNDPTCIKKLKQDVLVDLANEPNCSMLINELSEYITDVDPEIAKQAIQSIAKISLKVEAAVDEGIELLLSFLDLSTDYVTAETCVVLKDILRRFPDRYEDVIPSLQTCLKSVEAPEGRVAVIWLMGEYGDTIDDAPYILEQLIDNYQDEESSLVRSELLTATMKLFFKRPPELQKMLGRLLKHAIDDRSMVDVRDQALFYFRLLRHDVHEAARVVNCEKVKVSSFAEADDEELKDQIFD-EFNTLSVIYEAPSSRF 581          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A813G2Q1_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G2Q1_POLGL)

HSP 1 Score: 257 bits (657), Expect = 1.270e-79
Identity = 139/290 (47.93%), Postives = 193/290 (66.55%), Query Frame = 1
Query:    1 SHIVLAHIRDMVDRAP---ETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFVE 861
            ++ VL HI  +V+R+    E F  ++KQFFC+Y EPS  K +K++IL  +AD  +A  IVTEL+EYV  VD  I+R AIRAIG IA+ +   AD ++SSL +LL+LD D++ ++   VM+DL+RKYP +      A+ R LK + EPEG+ AV+W+LGEYG LI+DAPYLLEP+ID   EE    VRLE+LTA +KLFF RPPE+  M+ +LL Q + +     V DRA+ Y RLL  S  EA  VI   +  V  F E +D   RDRVF+ EF++LS ++++P   F++
Sbjct:   36 AYTVLMHISAIVNRSNANVEVFKPDFKQFFCRYNEPSYIKTVKIDILTMLADANSAEHIVTELSEYVTDVDAMISRQAIRAIGKIAVNVASTADLIVSSLTSLLELDIDYVCTEAAVVMKDLVRKYPQQFESASGAVERCLKIVTEPEGKCAVLWILGEYGLLIEDAPYLLEPMIDGFMEEQNGSVRLEMLTAAVKLFFSRPPEMQKMLGKLLQQAIQESAHPDVRDRAILYYRLLEHSAEEARRVICAPKEVVEEFQEEMDADFRDRVFD-EFNTLSTIYKQPAAKFLQ 324          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A812LET1_9DINO (BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812LET1_9DINO)

HSP 1 Score: 250 bits (639), Expect = 2.080e-76
Identity = 129/271 (47.60%), Postives = 192/271 (70.85%), Query Frame = 1
Query:   49 ETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFVE 861
            + FA ++KQFFC+Y EPS  K +K++IL  +AD  +A  +VTEL+EYV  VD EIAR AIRAIG IA+ +P  ++ +++SL  LL+LD D++ ++   VM+DL+RKYP++  +   A+ + L+ + EP+G++A++W+LGEYG LI+DAPYLLEP+ID+  EE  + V+LE+LTA +KLFF RPPEV  M+  L+ + + +     V DRAL Y RLL++SP EA  VI   +  V  F E +D  +RDRVF+ EF+SLS ++++P   F++
Sbjct:    4 QVFAGDFKQFFCRYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTGLLELDIDYVCTEAAVVMKDLVRKYPEQFQQASGAVQKCLRIVTEPDGKSALLWILGEYGLLIEDAPYLLEPMIDSFTEESGA-VQLEMLTAAVKLFFCRPPEVQKMLGCLMQKAIQECAHPDVRDRALLYYRLLQVSPEEARRVICAPKEVVEEFQEEMDVDLRDRVFD-EFNSLSTVYKQPASKFIQ 272          
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Match: A0A1D6FZV1_MAIZE (Beta-adaptin-like protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6FZV1_MAIZE)

HSP 1 Score: 250 bits (639), Expect = 8.600e-75
Identity = 135/290 (46.55%), Postives = 197/290 (67.93%), Query Frame = 1
Query:    1 SHIVLAHIRDMVDRAPETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTELTEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKSQTLCVMRDLLRKYPDKAPEVVPALHR-SLKRLEEPEGRAAVIWLLGEYGQLIDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLLAQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDDRVRDRVFEHEFDSLSVLFRKPEEDFVEDE 867
            S+ VL H+  +V RAP  F+S+YK F+C++++PS  K LKLE+L  IA+E+N  +IVTEL EY   VD+ IAR +IRA+G IA++     +A++  L   L++D D++ ++TL +++DLLRKYP  + + +  +   S K ++EP+G+AA+IW+LGEY Q + DAPY+LE L++N DEE + EVRL LLTA +K FFKRPPE    +   LA  L D T   VHDRALFY RLL+ SP+ AE V+   +  V  F +     ++DR+F+ EF+SLSV+++KP   F + E
Sbjct:  151 SYSVLCHLHLLVMRAPMLFSSDYKSFYCQFSDPSYVKKLKLEMLTAIANESNTYEIVTELCEYAGNVDVPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMDKDYVTAETLVLVKDLLRKYPQWSHDCIAVVGNISSKNIQEPKGKAALIWMLGEYSQDMHDAPYILESLVENWDEEHSPEVRLHLLTAVMKCFFKRPPETQKALGDTLAAGLSD-THQDVHDRALFYYRLLQYSPNVAERVVNPPKQAVSVFADTQSSEIKDRIFD-EFNSLSVVYQKPSYMFTDKE 437          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78970.18555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C8U9_9STRA3.960e-9453.15Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812T205_9DINO9.290e-8247.30BETAA-AD protein n=1 Tax=Symbiodinium sp. KB8 TaxI... [more]
A0A7S3SC85_9SPIT1.120e-8150.00Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4RGM6_9DINO3.960e-8149.13AP complex subunit beta n=1 Tax=Alexandrium monila... [more]
A0A7S1KWR4_ALECA1.640e-8049.13AP complex subunit beta n=2 Tax=Dinophyceae TaxID=... [more]
A0A5A8CEC2_CAFRO2.960e-8048.39Adaptin_N domain-containing protein n=5 Tax=Cafete... [more]
A0A7S3YIK4_9EUKA4.310e-8046.32AP complex subunit beta n=3 Tax=Lotharella globosa... [more]
A0A813G2Q1_POLGL1.270e-7947.93Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A812LET1_9DINO2.080e-7647.60BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 R... [more]
A0A1D6FZV1_MAIZE8.600e-7546.55Beta-adaptin-like protein n=3 Tax=Zea mays TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78970contigM-pyrifera_M_contig78970:2..874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score246.5
Seed ortholog evalue1.5e-62
Seed eggNOG ortholog4577.GRMZM2G029077_P01
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0019899,GO:0019900,GO:0019901,GO:0043424
EggNOG free text desc.Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules
EggNOG OGs37I5T@33090,3GD67@35493,3IC7W@38820,3KUZX@4447,COG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size873
Cds size843
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.006225-UTR-M-pyrifera_M_contig78970:1..311622816693.006225-UTR-M-pyrifera_M_contig78970:1..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78970 2..31 +
1692278123.3019762-UTR-M-pyrifera_M_contig78970:1..311692278123.3019762-UTR-M-pyrifera_M_contig78970:1..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78970 2..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.018822-CDS-M-pyrifera_M_contig78970:31..8741622816693.018822-CDS-M-pyrifera_M_contig78970:31..874Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78970 32..874 +
1692278123.31541-CDS-M-pyrifera_M_contig78970:31..8741692278123.31541-CDS-M-pyrifera_M_contig78970:31..874Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78970 32..874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78970.18555.1prot_M-pyrifera_M_contig78970.18555.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78970 32..874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78970.18555.1

>prot_M-pyrifera_M_contig78970.18555.1 ID=prot_M-pyrifera_M_contig78970.18555.1|Name=mRNA_M-pyrifera_M_contig78970.18555.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=281bp
MVDRAPETFASEYKQFFCKYAEPSCSKALKLEILPRIADETNAGDIVTEL
TEYVNGVDLEIARLAIRAIGDIAIRLPVGADAVMSSLAALLDLDSDWIKS
QTLCVMRDLLRKYPDKAPEVVPALHRSLKRLEEPEGRAAVIWLLGEYGQL
IDDAPYLLEPLIDNIDEEPASEVRLELLTATLKLFFKRPPEVSDMMRRLL
AQCLGDGTTSSVHDRALFYLRLLRLSPSEAEAVIAGERPPVPAFVEAVDD
RVRDRVFEHEFDSLSVLFRKPEEDFVEDEFI
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mRNA from alignment at M-pyrifera_M_contig78970:2..874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78970.18555.1 ID=mRNA_M-pyrifera_M_contig78970.18555.1|Name=mRNA_M-pyrifera_M_contig78970.18555.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=873bp|location=Sequence derived from alignment at M-pyrifera_M_contig78970:2..874+ (Macrocystis pyrifera P11B4 male)
TCTCACATTGTCCTTGCACACATTCGAGACATGGTAGATCGTGCACCAGA AACGTTTGCATCCGAGTATAAGCAATTCTTCTGCAAGTATGCTGAACCAT CTTGTTCCAAAGCTCTCAAACTAGAGATTCTCCCTCGAATTGCAGACGAA ACCAATGCAGGTGACATTGTTACTGAGTTGACCGAGTATGTCAATGGAGT TGACTTGGAAATTGCACGCCTTGCAATTCGTGCAATTGGAGACATTGCAA TTCGACTTCCAGTTGGAGCAGATGCAGTCATGTCCTCACTTGCAGCACTG CTTGATTTGGACTCGGATTGGATCAAATCGCAAACTCTCTGTGTGATGCG TGATCTTTTACGCAAGTATCCTGACAAGGCACCTGAAGTTGTACCCGCTC TGCATCGTTCCTTGAAGCGTTTGGAAGAACCAGAAGGTCGAGCAGCAGTC ATTTGGCTTCTTGGAGAATATGGACAATTGATTGATGATGCTCCATACCT CCTTGAACCATTAATTGACAACATTGATGAAGAACCAGCATCTGAAGTTC GCTTAGAACTCCTCACTGCAACTCTCAAACTCTTCTTCAAGCGTCCCCCT GAAGTGTCTGATATGATGCGTCGTTTGCTTGCTCAATGTCTCGGTGATGG AACTACTTCCTCTGTCCACGACAGAGCACTCTTCTACCTTCGTCTTCTTC GTCTCAGTCCATCTGAAGCAGAAGCAGTGATTGCAGGTGAAAGACCACCA GTCCCAGCCTTTGTCGAAGCAGTTGATGATCGTGTCCGCGATCGTGTCTT TGAACATGAGTTTGATTCTCTCTCTGTCCTTTTTCGAAAACCGGAAGAAG ATTTTGTCGAAGATGAATTCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78970:2..874+

>mRNA_M-pyrifera_M_contig78970.18555.1 ID=mRNA_M-pyrifera_M_contig78970.18555.1|Name=mRNA_M-pyrifera_M_contig78970.18555.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1686bp|location=Sequence derived from alignment at M-pyrifera_M_contig78970:2..874+ (Macrocystis pyrifera P11B4 male)
ATGGTAGATCGTGCACCAGAAACGTTTGCATCCGAGTATAAGCAATTCTT
CTGCAAGTATGCTGAACCATCTTGTTCCAAAGCTCTCAAACTAGAGATTC
TCCCTCGAATTGCAGACGAAACCAATGCAGGTGACATTGTTACTGAGTTG
ACCGAGTATGTCAATGGAGTTGACTTGGAAATTGCACGCCTTGCAATTCG
TGCAATTGGAGACATTGCAATTCGACTTCCAGTTGGAGCAGATGCAGTCA
TGTCCTCACTTGCAGCACTGCTTGATTTGGACTCGGATTGGATCAAATCG
CAAACTCTCTGTGTGATGCGTGATCTTTTACGCAAGTATCCTGACAAGGC
ACCTGAAGTTGTACCCGCTCTGCATCGTTCCTTGAAGCGTTTGGAAGAAC
CAGAAGGTCGAGCAGCAGTCATTTGGCTTCTTGGAGAATATGGACAATTG
ATTGATGATGCTCCATACCTCCTTGAACCATTAATTGACAACATTGATGA
AGAACCAGCATCTGAAGTTCGCTTAGAACTCCTCACTGCAACTCTCAAAC
TCTTCTTCAAGCGTCCCCCTGAAGTGTCTGATATGATGCGTCGTTTGCTT
GCTCAATGTCTCGGTGATGGAACTACTTCCTCTGTCCACGACAGAGCACT
CTTCTACCTTCGTCTTCTTCGTCTCAGTCCATCTGAAGCAGAAGCAGTGA
TTGCAGGTGAAAGACCACCAGTCCCAGCCTTTGTCGAAGCAGTTGATGAT
CGTGTCCGCGATCGTGTCTTTGAACATGAGTTTGATTCTCTCTCTGTCCT
TTTTCGAAAACCGGAAGAAGATTTTGTCGAAGATGAATTCATTATGGTAG
ATCGTGCACCAGAAACGTTTGCATCCGAGTATAAGCAATTCTTCTGCAAG
TATGCTGAACCATCTTGTTCCAAAGCTCTCAAACTAGAGATTCTCCCTCG
AATTGCAGACGAAACCAATGCAGGTGACATTGTTACTGAGTTGACCGAGT
ATGTCAATGGAGTTGACTTGGAAATTGCACGCCTTGCAATTCGTGCAATT
GGAGACATTGCAATTCGACTTCCAGTTGGAGCAGATGCAGTCATGTCCTC
ACTTGCAGCACTGCTTGATTTGGACTCGGATTGGATCAAATCGCAAACTC
TCTGTGTGATGCGTGATCTTTTACGCAAGTATCCTGACAAGGCACCTGAA
GTTGTACCCGCTCTGCATCGTTCCTTGAAGCGTTTGGAAGAACCAGAAGG
TCGAGCAGCAGTCATTTGGCTTCTTGGAGAATATGGACAATTGATTGATG
ATGCTCCATACCTCCTTGAACCATTAATTGACAACATTGATGAAGAACCA
GCATCTGAAGTTCGCTTAGAACTCCTCACTGCAACTCTCAAACTCTTCTT
CAAGCGTCCCCCTGAAGTGTCTGATATGATGCGTCGTTTGCTTGCTCAAT
GTCTCGGTGATGGAACTACTTCCTCTGTCCACGACAGAGCACTCTTCTAC
CTTCGTCTTCTTCGTCTCAGTCCATCTGAAGCAGAAGCAGTGATTGCAGG
TGAAAGACCACCAGTCCCAGCCTTTGTCGAAGCAGTTGATGATCGTGTCC
GCGATCGTGTCTTTGAACATGAGTTTGATTCTCTCTCTGTCCTTTTTCGA
AAACCGGAAGAAGATTTTGTCGAAGATGAATTCATT
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