mRNA_M-pyrifera_M_contig78951.18547.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78951.18547.1
Unique NamemRNA_M-pyrifera_M_contig78951.18547.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.410e-8
Identity = 29/45 (64.44%), Postives = 41/45 (91.11%), Query Frame = 1
Query:   10 VDLFEEMVEMG-ISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAK 141
            ++L++EM+E+G ++PDVYTYSSLV+AYA+LG+V  AVK LSDM+K
Sbjct:  996 LELYDEMMEVGGMAPDVYTYSSLVTAYARLGDVENAVKTLSDMSK 1040          
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: M5WR28_PRUPE (Uncharacterized protein n=6 Tax=Prunus TaxID=3754 RepID=M5WR28_PRUPE)

HSP 1 Score: 50.4 bits (119), Expect = 1.370e-5
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183
            +RA+DLF +MVE+G+SP + TY+ ++  Y K+G     +  +L DM   G + + FTCS V+
Sbjct:  247 ERAIDLFNKMVELGLSPTLVTYNVMLDVYGKMGRSWNKILGLLEDMRSKGFEFDEFTCSTVI 308          
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A5J9W8B9_9POAL (Smr domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9W8B9_9POAL)

HSP 1 Score: 50.1 bits (118), Expect = 1.870e-5
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    4 RAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAKGGVKPNGFTCSAVMQV 189
            RA+ LF EMVE GI P++ +Y+ ++    K   +  AV+VL D  K G+KP+   C  ++ V
Sbjct:  437 RALQLFAEMVEAGIEPNIMSYTIVIQCLGKAQRIRHAVEVLEDGLKRGLKPDDRLCGCLLSV 498          
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A0E0APY7_9ORYZ (Uncharacterized protein n=3 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0E0APY7_9ORYZ)

HSP 1 Score: 49.7 bits (117), Expect = 2.560e-5
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    7 AVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAKGGVKPNGFT 168
            A  LF++M++ G+SPDV TY+S++SA +K   +  A  VL+ M K G  PN  T
Sbjct:  320 AYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLARMVKNGAMPNRIT 373          
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A2P6QT10_ROSCH (Putative tetratricopeptide-like helical domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QT10_ROSCH)

HSP 1 Score: 48.9 bits (115), Expect = 4.740e-5
Identity = 24/62 (38.71%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183
            +RA+DLFE+++EMG+SP + TY+ ++  Y K G     +  +L++M   G + + FTCS V+
Sbjct:  242 ERAIDLFEKLMEMGLSPTLVTYNVMLDVYGKKGRSWNKILGLLAEMKSKGFEFDDFTCSTVI 303          
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A314UVA6_PRUYE (Pentatricopeptide repeat-containing protein n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314UVA6_PRUYE)

HSP 1 Score: 48.5 bits (114), Expect = 6.380e-5
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183
            +RA+DLF +MVE+G+SP + TY+ ++  Y K+G     +  +L +M   G + + FTCS V+
Sbjct:  117 ERAIDLFNKMVEIGLSPTLVTYNVMLDVYGKMGRSWYKILGLLEEMRSKGFEFDEFTCSTVI 178          
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: UPI0002C311D2 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic n=2 Tax=Rosoideae TaxID=171638 RepID=UPI0002C311D2)

HSP 1 Score: 48.5 bits (114), Expect = 6.570e-5
Identity = 23/62 (37.10%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183
            +RA+D+FE+++EMG+SP + TY+ ++  Y K G     +  +L +M   G++ + FTCS V+
Sbjct:  242 ERAIDMFEKLMEMGLSPTLVTYNVMLDVYGKKGRSWNKILGLLDEMKSKGLEFDDFTCSTVI 303          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FTM8_ECTSI1.410e-864.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
M5WR28_PRUPE1.370e-540.32Uncharacterized protein n=6 Tax=Prunus TaxID=3754 ... [more]
A0A5J9W8B9_9POAL1.870e-538.71Smr domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A0E0APY7_9ORYZ2.560e-544.44Uncharacterized protein n=3 Tax=Oryza glumipatula ... [more]
A0A2P6QT10_ROSCH4.740e-538.71Putative tetratricopeptide-like helical domain-con... [more]
A0A314UVA6_PRUYE6.380e-538.71Pentatricopeptide repeat-containing protein n=1 Ta... [more]
UPI0002C311D26.570e-537.10pentatricopeptide repeat-containing protein At2g18... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78951contigM-pyrifera_M_contig78951:408..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size192
Cds size165
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.6849072-UTR-M-pyrifera_M_contig78951:407..4341622816692.6849072-UTR-M-pyrifera_M_contig78951:407..434Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78951 408..434 +
1692278123.1591313-UTR-M-pyrifera_M_contig78951:407..4341692278123.1591313-UTR-M-pyrifera_M_contig78951:407..434Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78951 408..434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.7022746-CDS-M-pyrifera_M_contig78951:434..5991622816692.7022746-CDS-M-pyrifera_M_contig78951:434..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78951 435..599 +
1692278123.1744323-CDS-M-pyrifera_M_contig78951:434..5991692278123.1744323-CDS-M-pyrifera_M_contig78951:434..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78951 435..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78951.18547.1prot_M-pyrifera_M_contig78951.18547.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78951 435..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78951.18547.1

>prot_M-pyrifera_M_contig78951.18547.1 ID=prot_M-pyrifera_M_contig78951.18547.1|Name=mRNA_M-pyrifera_M_contig78951.18547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MVEMGISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAKGGVKPNGFTCSA
VMQV*
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mRNA from alignment at M-pyrifera_M_contig78951:408..599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78951.18547.1 ID=mRNA_M-pyrifera_M_contig78951.18547.1|Name=mRNA_M-pyrifera_M_contig78951.18547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig78951:408..599+ (Macrocystis pyrifera P11B4 male)
CAAAGAGCGGTGGATCTGTTTGAGGAGATGGTGGAGATGGGGATCAGCCC TGACGTGTACACGTACTCTAGCCTGGTCAGCGCCTACGCCAAGCTCGGTG AGGTGGCGGCCGCCGTGAAGGTGCTGTCCGACATGGCCAAGGGGGGAGTC AAGCCCAACGGGTTCACGTGCTCGGCGGTCATGCAGGTATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78951:408..599+

>mRNA_M-pyrifera_M_contig78951.18547.1 ID=mRNA_M-pyrifera_M_contig78951.18547.1|Name=mRNA_M-pyrifera_M_contig78951.18547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig78951:408..599+ (Macrocystis pyrifera P11B4 male)
ATGGTGGAGATGGGGATCAGCCCTGACGTGTACACGTACTCTAGCCTGGT
CAGCGCCTACGCCAAGCTCGGTGAGGTGGCGGCCGCCGTGAAGGTGCTGT
CCGACATGGCCAAGGGGGGAGTCAAGCCCAACGGGTTCACGTGCTCGGCG
GTCATGCAGGTATAAATGGTGGAGATGGGGATCAGCCCTGACGTGTACAC
GTACTCTAGCCTGGTCAGCGCCTACGCCAAGCTCGGTGAGGTGGCGGCCG
CCGTGAAGGTGCTGTCCGACATGGCCAAGGGGGGAGTCAAGCCCAACGGG
TTCACGTGCTCGGCGGTCATGCAGGTATAA
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