mRNA_M-pyrifera_M_contig78925.18544.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78925.18544.1
Unique NamemRNA_M-pyrifera_M_contig78925.18544.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78925.18544.1 vs. uniprot
Match: A0A7C3QAR4_9BACT (TlpA family protein disulfide reductase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3QAR4_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 9.530e-7
Identity = 57/228 (25.00%), Postives = 98/228 (42.98%), Query Frame = 1 
Query:   64 LLDASRKAISEMTGFAAQVKKFGDGDKTIKAMMPSMEG----QMIFGEHPEYGMSLRMTGKSRDKQDAAPN--SMDM---LRSNSAIVWLDYTERTIDEHPADTRIRTVPTSVKLMMFDSLLDEDPYGDRMDQAESIELEERKEVNGELCHVVRVNYAKSKAGGRSTSFGNTHNAARWFISVEDMLPRRIEYVTTGMMRFQLVTELSNFELS---DPSPEQIDVMRLP 711
            LL  S +AI      +   K +  G   ++++ P  +G    + + G  P+  ++ R+TG++  K   A +  S+D       N  I W D   + I E    +    +    K +  D L    PY   +    +  L+ RK + G  C VV++              G   N  RW++ VED LPRR++ V  G M  +++ E S+ ++    DPS   +  +R+P
Sbjct:   60 LLRRSAEAIRAARAMSYSAKAYSTG--ALESLTPKADGLVKMRRVAGGAPDAWLA-RITGRTTKKGGKAGDGESLDFDVAYLGNKRIEWADAKVQKIYEKVDRSAQSPIVQGAKSLRIDELFAVAPYTRDLTAGTATVLD-RKTIAGVECEVVQI------------EMGERKNKTRWYLGVEDHLPRRVDRVIEGAMASEVIVEASDLKVETSEDPSITPVS-LRIP 270
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78925.18544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C3QAR4_9BACT9.530e-725.00TlpA family protein disulfide reductase n=1 Tax=Ph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78925contigM-pyrifera_M_contig78925:1..897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size897
Cds size897
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.578212-CDS-M-pyrifera_M_contig78925:0..8971622816692.578212-CDS-M-pyrifera_M_contig78925:0..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78925 1..897 -
1692278123.1123402-CDS-M-pyrifera_M_contig78925:0..8971692278123.1123402-CDS-M-pyrifera_M_contig78925:0..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78925 1..897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78925.18544.1prot_M-pyrifera_M_contig78925.18544.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78925 1..897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78925.18544.1

>prot_M-pyrifera_M_contig78925.18544.1 ID=prot_M-pyrifera_M_contig78925.18544.1|Name=mRNA_M-pyrifera_M_contig78925.18544.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=299bp
MVCFVLGLGSPAMAQGEDPNELLDASRKAISEMTGFAAQVKKFGDGDKTI
KAMMPSMEGQMIFGEHPEYGMSLRMTGKSRDKQDAAPNSMDMLRSNSAIV
WLDYTERTIDEHPADTRIRTVPTSVKLMMFDSLLDEDPYGDRMDQAESIE
LEERKEVNGELCHVVRVNYAKSKAGGRSTSFGNTHNAARWFISVEDMLPR
RIEYVTTGMMRFQLVTELSNFELSDPSPEQIDVMRLPGFELKSTLNQSAP
EEVKAPSKSTQTSAPTAPAKTTSRSPRAPAFEFTNDAGATINNASQRGR
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mRNA from alignment at M-pyrifera_M_contig78925:1..897-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78925.18544.1 ID=mRNA_M-pyrifera_M_contig78925.18544.1|Name=mRNA_M-pyrifera_M_contig78925.18544.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=897bp|location=Sequence derived from alignment at M-pyrifera_M_contig78925:1..897- (Macrocystis pyrifera P11B4 male)
ATGGTGTGCTTCGTGCTGGGGCTCGGCTCTCCGGCAATGGCTCAGGGGGA
GGACCCCAACGAGCTGCTCGATGCGTCGCGCAAAGCGATCAGTGAGATGA
CAGGATTCGCGGCGCAGGTCAAAAAGTTCGGTGACGGCGACAAAACGATC
AAAGCGATGATGCCGAGCATGGAGGGGCAGATGATCTTCGGGGAGCATCC
CGAGTACGGCATGTCGCTTCGTATGACAGGAAAATCACGCGATAAGCAGG
ATGCGGCGCCCAACTCGATGGACATGCTGCGATCCAACAGCGCCATCGTC
TGGCTCGATTACACAGAGCGAACGATCGACGAGCATCCCGCTGATACGCG
GATCCGCACGGTGCCGACATCTGTGAAGCTGATGATGTTCGATTCGCTCC
TCGACGAAGATCCCTACGGCGATCGCATGGATCAAGCAGAATCGATCGAG
CTTGAGGAACGCAAAGAAGTCAACGGCGAACTCTGTCATGTCGTTCGCGT
GAACTACGCGAAATCCAAAGCAGGGGGTCGGAGCACAAGCTTCGGGAACA
CGCACAATGCCGCACGCTGGTTCATCAGCGTCGAAGACATGCTCCCACGA
CGCATCGAGTATGTCACGACTGGGATGATGCGATTCCAGCTCGTGACAGA
GCTGAGCAACTTTGAGCTGAGTGATCCGAGTCCCGAGCAGATCGATGTGA
TGCGACTTCCTGGATTCGAGCTCAAATCGACACTCAATCAGTCTGCGCCA
GAAGAAGTCAAAGCGCCCAGCAAGTCGACACAGACGAGCGCTCCGACTGC
TCCCGCGAAGACAACGAGTCGCAGTCCTCGCGCGCCGGCGTTCGAGTTTA
CGAACGATGCTGGCGCGACAATCAACAACGCTTCGCAGCGTGGGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78925:1..897-

>mRNA_M-pyrifera_M_contig78925.18544.1 ID=mRNA_M-pyrifera_M_contig78925.18544.1|Name=mRNA_M-pyrifera_M_contig78925.18544.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1794bp|location=Sequence derived from alignment at M-pyrifera_M_contig78925:1..897- (Macrocystis pyrifera P11B4 male)
ATGGTGTGCTTCGTGCTGGGGCTCGGCTCTCCGGCAATGGCTCAGGGGGA
GGACCCCAACGAGCTGCTCGATGCGTCGCGCAAAGCGATCAGTGAGATGA
CAGGATTCGCGGCGCAGGTCAAAAAGTTCGGTGACGGCGACAAAACGATC
AAAGCGATGATGCCGAGCATGGAGGGGCAGATGATCTTCGGGGAGCATCC
CGAGTACGGCATGTCGCTTCGTATGACAGGAAAATCACGCGATAAGCAGG
ATGCGGCGCCCAACTCGATGGACATGCTGCGATCCAACAGCGCCATCGTC
TGGCTCGATTACACAGAGCGAACGATCGACGAGCATCCCGCTGATACGCG
GATCCGCACGGTGCCGACATCTGTGAAGCTGATGATGTTCGATTCGCTCC
TCGACGAAGATCCCTACGGCGATCGCATGGATCAAGCAGAATCGATCGAG
CTTGAGGAACGCAAAGAAGTCAACGGCGAACTCTGTCATGTCGTTCGCGT
GAACTACGCGAAATCCAAAGCAGGGGGTCGGAGCACAAGCTTCGGGAACA
CGCACAATGCCGCACGCTGGTTCATCAGCGTCGAAGACATGCTCCCACGA
CGCATCGAGTATGTCACGACTGGGATGATGCGATTCCAGCTCGTGACAGA
GCTGAGCAACTTTGAGCTGAGTGATCCGAGTCCCGAGCAGATCGATGTGA
TGCGACTTCCTGGATTCGAGCTCAAATCGACACTCAATCAGTCTGCGCCA
GAAGAAGTCAAAGCGCCCAGCAAGTCGACACAGACGAGCGCTCCGACTGC
TCCCGCGAAGACAACGAGTCGCAGTCCTCGCGCGCCGGCGTTCGAGTTTA
CGAACGATGCTGGCGCGACAATCAACAACGCTTCGCAGCGTGGGCGCATG
GTGTGCTTCGTGCTGGGGCTCGGCTCTCCGGCAATGGCTCAGGGGGAGGA
CCCCAACGAGCTGCTCGATGCGTCGCGCAAAGCGATCAGTGAGATGACAG
GATTCGCGGCGCAGGTCAAAAAGTTCGGTGACGGCGACAAAACGATCAAA
GCGATGATGCCGAGCATGGAGGGGCAGATGATCTTCGGGGAGCATCCCGA
GTACGGCATGTCGCTTCGTATGACAGGAAAATCACGCGATAAGCAGGATG
CGGCGCCCAACTCGATGGACATGCTGCGATCCAACAGCGCCATCGTCTGG
CTCGATTACACAGAGCGAACGATCGACGAGCATCCCGCTGATACGCGGAT
CCGCACGGTGCCGACATCTGTGAAGCTGATGATGTTCGATTCGCTCCTCG
ACGAAGATCCCTACGGCGATCGCATGGATCAAGCAGAATCGATCGAGCTT
GAGGAACGCAAAGAAGTCAACGGCGAACTCTGTCATGTCGTTCGCGTGAA
CTACGCGAAATCCAAAGCAGGGGGTCGGAGCACAAGCTTCGGGAACACGC
ACAATGCCGCACGCTGGTTCATCAGCGTCGAAGACATGCTCCCACGACGC
ATCGAGTATGTCACGACTGGGATGATGCGATTCCAGCTCGTGACAGAGCT
GAGCAACTTTGAGCTGAGTGATCCGAGTCCCGAGCAGATCGATGTGATGC
GACTTCCTGGATTCGAGCTCAAATCGACACTCAATCAGTCTGCGCCAGAA
GAAGTCAAAGCGCCCAGCAAGTCGACACAGACGAGCGCTCCGACTGCTCC
CGCGAAGACAACGAGTCGCAGTCCTCGCGCGCCGGCGTTCGAGTTTACGA
ACGATGCTGGCGCGACAATCAACAACGCTTCGCAGCGTGGGCGC
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