mRNA_M-pyrifera_M_contig78921.18542.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78921.18542.1
Unique NamemRNA_M-pyrifera_M_contig78921.18542.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A8K1C2D7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2D7_PYTOL)

HSP 1 Score: 142 bits (357), Expect = 1.580e-40
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    4 RKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            RK RIR AFD+FD +    VI EEV TI+RYLG +PS+  I++KI+P MQEDEP+ +V+ D+FEK  LE+M T EYAPDT++ LL AFR LD D  G I+A  ++ELL+ +G +PFRE+E EAFL  A D +TG
Sbjct:   15 RKARIRLAFDMFDKEKKGCVIQEEVSTIMRYLGAFPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVMYTNEYAPDTDETLLAAFRVLDADKKGYIEADVMRELLITKG-TPFREKEMEAFLSVAKDPQTG 147          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A1W0A5Z6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5Z6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.380e-40
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    7 KKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLET 402
            + +IR AFD+FD D    VI EEV TI+RYLG +PS+  I++KI+P MQ+DEP+ +V+ +KFEK  LE+M T EY PDT++ LL AFR LDP+  G IDA  +KELLM +G +PFRE+E E F+  A D++T
Sbjct:   14 RAQIRSAFDMFDKDRKGCVIQEEVSTIMRYLGAYPSEKDIIKKILPEMQDDEPSTFVTYEKFEKKMLEVMYTHEYEPDTDETLLAAFRVLDPEKKGYIDADTMKELLMTKG-TPFREKELEGFMHVAKDMDT 144          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: K3XBG4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBG4_GLOUD)

HSP 1 Score: 140 bits (353), Expect = 7.850e-40
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    4 RKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            RK RIR AFD+FD D    VI EEV TI+RYLG +PS+  I++KI+P MQEDEP+ +V+ D+FEK  LE++ T EYAPDT++ LL AFR +D +  G I+A  ++ELL+ +G +PFRE+E EAFL  A D  TG
Sbjct:   23 RKLRIRAAFDMFDKDKKGCVIQEEVSTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVLYTNEYAPDTDETLLAAFRVIDAEKKGYIEADIMRELLITKG-TPFREKEMEAFLSVAKDAPTG 155          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A2D4CC36_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC36_PYTIN)

HSP 1 Score: 139 bits (351), Expect = 1.320e-39
Identity = 73/134 (54.48%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    4 RKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            RK RIR+AFD+FD +    VI EEV TI+R+LG +PS+  I++KI+P MQEDEP+ +V+ D+FEK  LE+M T EYAPDT++ LL AFR +D +  G I+A  ++ELL+ +G +PFRE E EAFL  A D +TG
Sbjct:   17 RKARIRQAFDMFDKEKKGCVIQEEVSTIMRFLGAYPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVMYTNEYAPDTDETLLAAFRVIDTEKRGYIEADVMRELLITKG-TPFREXEMEAFLSVAKDPQTG 149          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: F0YEV1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV1_AURAN)

HSP 1 Score: 137 bits (346), Expect = 6.330e-39
Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 1
Query:    1 QRKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            + KK+IREAF +FD D    VI EEV TI+RYLG +P++ A+V++I+P M EDEP+ +V  ++FE   LE++A G++ PD+E+VLL+AFR  D D  G I+A R++E L+ +G +PFRE+E +AFL  A DLETG
Sbjct:   13 ETKKKIREAFQLFDKDRKGCVIQEEVSTIMRYLGAYPTERAMVKEILPDMMEDEPSAFVKYERFEPKMLEILAEGDWEPDSEEVLLQAFRVFDEDGKGYIEANRLREALITKG-TPFREKEIDAFLSVAKDLETG 146          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A5D6YIQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIQ5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.320e-38
Identity = 71/134 (52.99%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    4 RKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            RK RIR AFD+FD D    V+ EEV TI+RYLG +PS+  I++KI+P MQEDEP+ +V+ ++FEK  LE++ T EY PDT++ LL AFR +D +  G I+A  ++ELL+ +G +PFRE+E EAFL  A D +TG
Sbjct:   24 RKLRIRAAFDMFDKDKKGCVVQEEVGTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVTFERFEKKMLEVLYTNEYEPDTDEALLAAFRTIDAEKRGYIEADTMRELLITKG-TPFREKELEAFLGVAKDPQTG 156          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A7S3YMG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMG9_HETAK)

HSP 1 Score: 136 bits (343), Expect = 1.380e-38
Identity = 67/134 (50.00%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 QRKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLET 402
            + K++I++AF +FD +    VI EEV TI+RYLG +P++ A+V++I+P +Q+DEPT +V  D+FE+  LE++A+ E+ PD  DV+L+AFR LDPD  G IDA+R+KELL+ +G +PFRE+E +AF+  A D++T
Sbjct:    2 ETKQKIKDAFSLFDKEKKFCVIQEEVSTIMRYLGAYPTEKAMVKEILPEIQDDEPTAFVQYDRFEQKMLEILASHEWDPDPPDVILQAFRTLDPDGLGYIDASRMKELLVTKG-TPFREKELDAFMTVAKDMDT 134          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A024UCL1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UCL1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.850e-38
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    7 KKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            + RI+ AFD+FD D    VI EEV TI+RYLG +PS+  I++KI+P MQEDEP+ +V+ ++FEK  LE++ + EY PDT++ LL AFR LDP+  G IDA  +K+LL+ +G +PFRE+E E F+  A D ETG
Sbjct:   13 RARIKSAFDLFDKDRKGCVIQEEVSTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVTYERFEKKMLEVLYSHEYEPDTDETLLAAFRVLDPEKKGYIDADVMKDLLITKG-TPFREKELEGFMHVAKDGETG 144          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A3R7HE12_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=A0A3R7HE12_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.120e-37
Identity = 72/134 (53.73%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    4 RKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            RK RIR AFD+FD D    VI EEV TI+RYLG +PS+  I++KI+P MQEDEP+ +V+ D+FEK  LE++ T EY PDT++ +L AFR +D +  G I+A  ++ELL  +G +PFRE+E EAFL  A D  TG
Sbjct:   50 RKLRIRVAFDMFDKDKKGCVIQEEVSTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVAYDRFEKKMLEVLYTNEYEPDTDETVLAAFRVIDTEKKGYIEAEVLRELLTTKG-TPFREKEMEAFLAAAKDPPTG 182          
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Match: A0A7S1C5J1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5J1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.790e-37
Identity = 67/133 (50.38%), Postives = 100/133 (75.19%), Query Frame = 1
Query:    7 KKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAMQEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAIDAARIKELLMEEGESPFREEEAEAFLRFATDLETG 405
            ++RI+EA+++FD +    +I EEVPTI+RYL  + SD  +VEK++P +QEDEPT +V+ +KFEK  L +M + EYAPDTEDVLL+AFR +D +  G ++A +++ELL+  G + FR++E EAF+  A D+ETG
Sbjct:   16 RERIKEAWELFDKEKRGVIIQEEVPTIMRYLDCYVSDKDVVEKVLPDIQEDEPTAFVTYEKFEKKMLAVMESQEYAPDTEDVLLQAFRTIDTERRGYVEADKMRELLLRHG-TAFRDKEIEAFMTDAKDIETG 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78921.18542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1C2D7_PYTOL1.580e-4056.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1W0A5Z6_9STRA6.380e-4054.55Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
K3XBG4_GLOUD7.850e-4055.22Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4CC36_PYTIN1.320e-3954.48Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
F0YEV1_AURAN6.330e-3951.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5D6YIQ5_9STRA1.320e-3852.99Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3YMG9_HETAK1.380e-3850.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024UCL1_9STRA3.850e-3852.63Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A3R7HE12_9STRA1.120e-3753.73Uncharacterized protein (Fragment) n=5 Tax=Phytoph... [more]
A0A7S1C5J1_9STRA1.790e-3750.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78921contigM-pyrifera_M_contig78921:3..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue4.9e-32
Seed eggNOG ortholog36331.EPrPI00000020351
Preferred nameEFCAB2
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0097014,GO:0099568,GO:0120025,GO:0120038
EggNOG free text desc.Troponin C, skeletal muscle. Source PGD
EggNOG OGs1MF3W@121069,COG5126@1,KOG0027@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.4868543-CDS-M-pyrifera_M_contig78921:2..3361622816692.4868543-CDS-M-pyrifera_M_contig78921:2..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78921 3..336 -
1692278123.0437462-CDS-M-pyrifera_M_contig78921:2..3361692278123.0437462-CDS-M-pyrifera_M_contig78921:2..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78921 3..336 -
1622816692.4993258-CDS-M-pyrifera_M_contig78921:426..4971622816692.4993258-CDS-M-pyrifera_M_contig78921:426..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78921 427..497 -
1692278123.0563648-CDS-M-pyrifera_M_contig78921:426..4971692278123.0563648-CDS-M-pyrifera_M_contig78921:426..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78921 427..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78921.18542.1prot_M-pyrifera_M_contig78921.18542.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78921 3..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78921.18542.1

>prot_M-pyrifera_M_contig78921.18542.1 ID=prot_M-pyrifera_M_contig78921.18542.1|Name=mRNA_M-pyrifera_M_contig78921.18542.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
QRKKRIREAFDVFDLDNNESVILEEVPTILRYLGIWPSDFAIVEKIIPAM
QEDEPTRYVSIDKFEKVTLELMATGEYAPDTEDVLLRAFRALDPDDTGAI
DAARIKELLMEEGESPFREEEAEAFLRFATDLETG
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mRNA from alignment at M-pyrifera_M_contig78921:3..497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78921.18542.1 ID=mRNA_M-pyrifera_M_contig78921.18542.1|Name=mRNA_M-pyrifera_M_contig78921.18542.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig78921:3..497- (Macrocystis pyrifera P11B4 male)
CAAAGGAAAAAGAGGATTCGAGAAGCATTTGATGTGTTTGACTTGGACAA TAACGAATCTGTAATTCTCGAGTACGTTACAAGTCGTAGTTTCACCCTCC ATACACTCAATCCTCAACTCTCCCCACCTCTCCCATCTTAACCCTTTGTT TTCTTATGCAGAGAAGTTCCTACCATCCTTCGGTACTTGGGAATTTGGCC ATCCGACTTTGCTATCGTTGAAAAAATCATCCCTGCCATGCAAGAAGACG AGCCTACTAGGTATGTATCGATTGACAAGTTTGAGAAGGTTACGTTGGAG TTGATGGCGACTGGAGAATATGCACCAGATACCGAGGATGTTTTGTTACG AGCATTTCGGGCCCTTGATCCAGACGATACTGGAGCAATTGATGCAGCAA GAATCAAAGAGTTGCTTATGGAAGAAGGTGAGAGTCCTTTCCGAGAAGAA GAAGCAGAAGCCTTTCTACGATTCGCCACTGATCTCGAAACTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78921:3..497-

>mRNA_M-pyrifera_M_contig78921.18542.1 ID=mRNA_M-pyrifera_M_contig78921.18542.1|Name=mRNA_M-pyrifera_M_contig78921.18542.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig78921:3..497- (Macrocystis pyrifera P11B4 male)
CAAAGGAAAAAGAGGATTCGAGAAGCATTTGATGTGTTTGACTTGGACAA
TAACGAATCTGTAATTCTCGACAAAGGAAAAAGAGGATTCGAGAAGCATT
TGATGTGTTTGACTTGGACAATAACGAATCTGTAATTCTCGAAGAAGTTC
CTACCATCCTTCGGTACTTGGGAATTTGGCCATCCGACTTTGCTATCGTT
GAAAAAATCATCCCTGCCATGCAAGAAGACGAGCCTACTAGGTATGTATC
GATTGACAAGTTTGAGAAGGTTACGTTGGAGTTGATGGCGACTGGAGAAT
ATGCACCAGATACCGAGGATGTTTTGTTACGAGCATTTCGGGCCCTTGAT
CCAGACGATACTGGAGCAATTGATGCAGCAAGAATCAAAGAGTTGCTTAT
GGAAGAAGGTGAGAGTCCTTTCCGAGAAGAAGAAGCAGAAGCCTTTCTAC
GATTCGCCACTGATCTCGAAACTGGCAGAAGTTCCTACCATCCTTCGGTA
CTTGGGAATTTGGCCATCCGACTTTGCTATCGTTGAAAAAATCATCCCTG
CCATGCAAGAAGACGAGCCTACTAGGTATGTATCGATTGACAAGTTTGAG
AAGGTTACGTTGGAGTTGATGGCGACTGGAGAATATGCACCAGATACCGA
GGATGTTTTGTTACGAGCATTTCGGGCCCTTGATCCAGACGATACTGGAG
CAATTGATGCAGCAAGAATCAAAGAGTTGCTTATGGAAGAAGGTGAGAGT
CCTTTCCGAGAAGAAGAAGCAGAAGCCTTTCTACGATTCGCCACTGATCT
CGAAACTGGC
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