mRNA_M-pyrifera_M_contig78914.18535.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78914.18535.1
Unique NamemRNA_M-pyrifera_M_contig78914.18535.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78914.18535.1 vs. uniprot
Match: A0A3M1FZV2_9CHLR (Uncharacterized protein n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FZV2_9CHLR)

HSP 1 Score: 58.5 bits (140), Expect = 1.820e-7
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 1 
Query:   31 PGGRXXXXXXMKAGMD---AAAETLGLSAEDLKSALDEGSTLEELATSAGVSTDDLEAAMAA-AIEDVAPAQAAERMTAD-----LGSIISGERPXXXXXXXGGPGQTDVQSAVEKLAEALDTSTEDLFASIEAG 408
            PGG        + G D   A AE LG++AE+L++AL+EG TLEE+AT  GV   DL+A M   A E +A A A  ++T +     L  I +GERP       G PGQ       E LAEAL  ++E+L  ++ +G
Sbjct:   50 PGGGHGFGKGFRGGEDHLQAMAEALGMTAEELQAALEEGQTLEEIATEQGV---DLQAVMLEQAQEKLAQAVADGKLTQEEADQILERIQNGERPGPFGPRRGHPGQ-------EALAEALGMTSEELHEALRSG 174
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BLAST of mRNA_M-pyrifera_M_contig78914.18535.1 vs. uniprot
Match: A0A853CP12_9ACTN (Uncharacterized protein n=1 Tax=Geodermatophilus daqingensis TaxID=2026353 RepID=A0A853CP12_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.290e-5
Identity = 48/138 (34.78%), Postives = 67/138 (48.55%), Query Frame = 1 
Query:   19 AGGPPGGRXXXXXXMKAGMDAAAETLGLSAEDLKSALDEGSTLEELATSAGVSTDDLEAAMAAAIEDVAPAQAAERMTADLGSIISGERPXXXXXXXGGPGQTDVQSAVEKLAEALDTSTEDLFASIEAGT-LADLFE 429
            AG PPGG           + A AE LG+S  DL+SAL  GST+ +LAT+AGVS DDL   +A+ +       A    TA    I  G RP           + D+   ++ L+ AL  S+ DL   +  G+ + DL +
Sbjct:   15 AGPPPGGAHAKT------LKAVAEKLGMSTGDLRSALKSGSTMADLATTAGVSRDDLVQTIASTLPATGRDGATVDTTAMATDIADGVRPQRPSQSS----EPDLGKGLDALSSALGISSSDLLDRLTEGSGITDLLQ 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78914.18535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3M1FZV2_9CHLR1.820e-740.00Uncharacterized protein n=1 Tax=Caldilineae bacter... [more]
A0A853CP12_9ACTN1.290e-534.78Uncharacterized protein n=1 Tax=Geodermatophilus d... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78914contigM-pyrifera_M_contig78914:242..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.1091206-CDS-M-pyrifera_M_contig78914:241..6731622816692.1091206-CDS-M-pyrifera_M_contig78914:241..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78914 242..673 +
1692278122.822767-CDS-M-pyrifera_M_contig78914:241..6731692278122.822767-CDS-M-pyrifera_M_contig78914:241..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78914 242..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78914.18535.1prot_M-pyrifera_M_contig78914.18535.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78914 242..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78914.18535.1

>prot_M-pyrifera_M_contig78914.18535.1 ID=prot_M-pyrifera_M_contig78914.18535.1|Name=mRNA_M-pyrifera_M_contig78914.18535.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MSQVQGAGGPPGGRPPGGGPMKAGMDAAAETLGLSAEDLKSALDEGSTLE
ELATSAGVSTDDLEAAMAAAIEDVAPAQAAERMTADLGSIISGERPPPPP
RSGGGPGQTDVQSAVEKLAEALDTSTEDLFASIEAGTLADLFET
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mRNA from alignment at M-pyrifera_M_contig78914:242..673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78914.18535.1 ID=mRNA_M-pyrifera_M_contig78914.18535.1|Name=mRNA_M-pyrifera_M_contig78914.18535.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig78914:242..673+ (Macrocystis pyrifera P11B4 male)
ATGTCCCAGGTCCAGGGAGCCGGTGGCCCTCCGGGTGGCCGTCCTCCAGG
CGGCGGACCGATGAAGGCAGGAATGGATGCCGCGGCCGAGACCCTCGGGC
TCAGTGCCGAAGATCTCAAGAGCGCGCTCGACGAGGGCAGCACACTCGAA
GAGCTCGCAACCTCCGCCGGTGTGAGCACCGACGATCTCGAAGCGGCCAT
GGCCGCAGCCATCGAGGACGTTGCTCCCGCACAGGCAGCCGAACGGATGA
CGGCCGACCTCGGCTCGATCATCTCGGGCGAACGTCCACCGCCGCCCCCT
CGCTCAGGCGGAGGGCCGGGTCAGACCGACGTGCAGTCTGCGGTGGAGAA
ACTGGCAGAGGCGCTCGACACGAGCACCGAGGACCTGTTTGCGTCCATCG
AGGCAGGCACACTCGCCGATCTGTTCGAGACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78914:242..673+

>mRNA_M-pyrifera_M_contig78914.18535.1 ID=mRNA_M-pyrifera_M_contig78914.18535.1|Name=mRNA_M-pyrifera_M_contig78914.18535.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig78914:242..673+ (Macrocystis pyrifera P11B4 male)
ATGTCCCAGGTCCAGGGAGCCGGTGGCCCTCCGGGTGGCCGTCCTCCAGG
CGGCGGACCGATGAAGGCAGGAATGGATGCCGCGGCCGAGACCCTCGGGC
TCAGTGCCGAAGATCTCAAGAGCGCGCTCGACGAGGGCAGCACACTCGAA
GAGCTCGCAACCTCCGCCGGTGTGAGCACCGACGATCTCGAAGCGGCCAT
GGCCGCAGCCATCGAGGACGTTGCTCCCGCACAGGCAGCCGAACGGATGA
CGGCCGACCTCGGCTCGATCATCTCGGGCGAACGTCCACCGCCGCCCCCT
CGCTCAGGCGGAGGGCCGGGTCAGACCGACGTGCAGTCTGCGGTGGAGAA
ACTGGCAGAGGCGCTCGACACGAGCACCGAGGACCTGTTTGCGTCCATCG
AGGCAGGCACACTCGCCGATCTGTTCGAGACCATGTCCCAGGTCCAGGGA
GCCGGTGGCCCTCCGGGTGGCCGTCCTCCAGGCGGCGGACCGATGAAGGC
AGGAATGGATGCCGCGGCCGAGACCCTCGGGCTCAGTGCCGAAGATCTCA
AGAGCGCGCTCGACGAGGGCAGCACACTCGAAGAGCTCGCAACCTCCGCC
GGTGTGAGCACCGACGATCTCGAAGCGGCCATGGCCGCAGCCATCGAGGA
CGTTGCTCCCGCACAGGCAGCCGAACGGATGACGGCCGACCTCGGCTCGA
TCATCTCGGGCGAACGTCCACCGCCGCCCCCTCGCTCAGGCGGAGGGCCG
GGTCAGACCGACGTGCAGTCTGCGGTGGAGAAACTGGCAGAGGCGCTCGA
CACGAGCACCGAGGACCTGTTTGCGTCCATCGAGGCAGGCACACTCGCCG
ATCTGTTCGAGACC
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