mRNA_M-pyrifera_M_contig78830.18518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78830.18518.1
Unique NamemRNA_M-pyrifera_M_contig78830.18518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78830.18518.1 vs. uniprot
Match: A0A800BCX8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800BCX8_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 5.900e-15
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 1 
Query:   19 VADGVLLQRRSFFRLSAATIAAGLAASCATVAGGKGAGTALLDEPPTGE---TLDLAEFMAQMSPRAKQFIASGGTLEEAYLMSVGELMARLETPTYDQAMGATQAHVESRRSVGAPLEFVAVMFQLEPGKGFPHHDHRNYNGVI 444
            + DGV+++RRS   LSAA +++ L  + +  A          D     E    L  AEF+ Q+ P+A++ + S G  E+AYLM+V   M+RL  P       A +   +  R  G       +   L+PGKGF HHDH NYNGVI
Sbjct:   29 IEDGVVIERRSILWLSAAAVSSMLVGAVSLPAQDPKPAPTPPDRTGPQEGMGKLTHAEFLEQLYPQARRLVDSKGEDEQAYLMTVAAAMSRLRDPKAP-IRDAMRKFSKQHRKQGERFPIGVMAIHLKPGKGFSHHDHLNYNGVI 172
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78830.18518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A800BCX8_9BACT5.900e-1535.86Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78830contigM-pyrifera_M_contig78830:3..446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.1841748-CDS-M-pyrifera_M_contig78830:2..4461622816691.1841748-CDS-M-pyrifera_M_contig78830:2..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78830 3..446 -
1692278122.2323554-CDS-M-pyrifera_M_contig78830:2..4461692278122.2323554-CDS-M-pyrifera_M_contig78830:2..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78830 3..446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78830.18518.1prot_M-pyrifera_M_contig78830.18518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78830 3..446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78830.18518.1

>prot_M-pyrifera_M_contig78830.18518.1 ID=prot_M-pyrifera_M_contig78830.18518.1|Name=mRNA_M-pyrifera_M_contig78830.18518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
ERPQEGVADGVLLQRRSFFRLSAATIAAGLAASCATVAGGKGAGTALLDE
PPTGETLDLAEFMAQMSPRAKQFIASGGTLEEAYLMSVGELMARLETPTY
DQAMGATQAHVESRRSVGAPLEFVAVMFQLEPGKGFPHHDHRNYNGVI
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mRNA from alignment at M-pyrifera_M_contig78830:3..446-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78830.18518.1 ID=mRNA_M-pyrifera_M_contig78830.18518.1|Name=mRNA_M-pyrifera_M_contig78830.18518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig78830:3..446- (Macrocystis pyrifera P11B4 male)
GAACGGCCCCAAGAAGGGGTCGCCGATGGCGTCCTGCTTCAGCGCCGGAG
CTTCTTCCGCTTGTCCGCGGCGACGATCGCGGCGGGGCTGGCCGCGTCTT
GCGCCACCGTCGCGGGTGGCAAGGGCGCGGGGACCGCGCTGCTCGACGAG
CCGCCGACCGGCGAGACCCTCGACCTCGCCGAGTTCATGGCGCAGATGTC
GCCGCGGGCCAAGCAGTTCATCGCTTCCGGTGGCACGCTCGAAGAGGCCT
ACCTGATGAGCGTCGGCGAGCTGATGGCGCGCCTCGAGACGCCGACCTAC
GACCAAGCGATGGGCGCGACCCAGGCCCACGTCGAGAGCCGCCGTTCGGT
GGGTGCGCCGCTCGAGTTCGTCGCGGTGATGTTCCAGCTCGAACCCGGCA
AGGGCTTTCCCCACCACGACCACCGGAACTACAACGGCGTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78830:3..446-

>mRNA_M-pyrifera_M_contig78830.18518.1 ID=mRNA_M-pyrifera_M_contig78830.18518.1|Name=mRNA_M-pyrifera_M_contig78830.18518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig78830:3..446- (Macrocystis pyrifera P11B4 male)
GAACGGCCCCAAGAAGGGGTCGCCGATGGCGTCCTGCTTCAGCGCCGGAG
CTTCTTCCGCTTGTCCGCGGCGACGATCGCGGCGGGGCTGGCCGCGTCTT
GCGCCACCGTCGCGGGTGGCAAGGGCGCGGGGACCGCGCTGCTCGACGAG
CCGCCGACCGGCGAGACCCTCGACCTCGCCGAGTTCATGGCGCAGATGTC
GCCGCGGGCCAAGCAGTTCATCGCTTCCGGTGGCACGCTCGAAGAGGCCT
ACCTGATGAGCGTCGGCGAGCTGATGGCGCGCCTCGAGACGCCGACCTAC
GACCAAGCGATGGGCGCGACCCAGGCCCACGTCGAGAGCCGCCGTTCGGT
GGGTGCGCCGCTCGAGTTCGTCGCGGTGATGTTCCAGCTCGAACCCGGCA
AGGGCTTTCCCCACCACGACCACCGGAACTACAACGGCGTGATCGAACGG
CCCCAAGAAGGGGTCGCCGATGGCGTCCTGCTTCAGCGCCGGAGCTTCTT
CCGCTTGTCCGCGGCGACGATCGCGGCGGGGCTGGCCGCGTCTTGCGCCA
CCGTCGCGGGTGGCAAGGGCGCGGGGACCGCGCTGCTCGACGAGCCGCCG
ACCGGCGAGACCCTCGACCTCGCCGAGTTCATGGCGCAGATGTCGCCGCG
GGCCAAGCAGTTCATCGCTTCCGGTGGCACGCTCGAAGAGGCCTACCTGA
TGAGCGTCGGCGAGCTGATGGCGCGCCTCGAGACGCCGACCTACGACCAA
GCGATGGGCGCGACCCAGGCCCACGTCGAGAGCCGCCGTTCGGTGGGTGC
GCCGCTCGAGTTCGTCGCGGTGATGTTCCAGCTCGAACCCGGCAAGGGCT
TTCCCCACCACGACCACCGGAACTACAACGGCGTGATC
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