mRNA_M-pyrifera_M_contig78816.18516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78816.18516.1
Unique NamemRNA_M-pyrifera_M_contig78816.18516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78816.18516.1 vs. uniprot
Match: D7FX52_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX52_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 6.750e-13
Identity = 32/43 (74.42%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    4 LPHSLRQLLLQLSSVQGDVFDNDEEKKAYASFLVKGATAVLSS 132
            LPH+LRQLLLQLSSV GD+F+ND+++KAYASFLV+GA AVL++
Sbjct:  288 LPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAA 330
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BLAST of mRNA_M-pyrifera_M_contig78816.18516.1 vs. uniprot
Match: A0A6H5K5P3_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.750e-13
Identity = 32/43 (74.42%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    4 LPHSLRQLLLQLSSVQGDVFDNDEEKKAYASFLVKGATAVLSS 132
            LPH+LRQLLLQLSSV GD+F+ND+++KAYASFLV+GA AVL++
Sbjct:  288 LPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAA 330
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78816.18516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX52_ECTSI6.750e-1374.42Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5K5P3_9PHAE6.750e-1374.42Importin N-terminal domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78816contigM-pyrifera_M_contig78816:336..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog2880.D7FX52
KEGG koko:K18460
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.1148465-CDS-M-pyrifera_M_contig78816:335..4671622816691.1148465-CDS-M-pyrifera_M_contig78816:335..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78816 336..467 -
1692278122.1984966-CDS-M-pyrifera_M_contig78816:335..4671692278122.1984966-CDS-M-pyrifera_M_contig78816:335..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78816 336..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78816.18516.1prot_M-pyrifera_M_contig78816.18516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78816 336..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78816.18516.1

>prot_M-pyrifera_M_contig78816.18516.1 ID=prot_M-pyrifera_M_contig78816.18516.1|Name=mRNA_M-pyrifera_M_contig78816.18516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
NLPHSLRQLLLQLSSVQGDVFDNDEEKKAYASFLVKGATAVLSS
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mRNA from alignment at M-pyrifera_M_contig78816:336..467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78816.18516.1 ID=mRNA_M-pyrifera_M_contig78816.18516.1|Name=mRNA_M-pyrifera_M_contig78816.18516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig78816:336..467- (Macrocystis pyrifera P11B4 male)
AACCTCCCCCATTCGCTCCGCCAGCTTCTCCTCCAACTCTCGTCGGTCCA
GGGGGACGTTTTTGATAACGATGAGGAGAAGAAGGCCTACGCGTCTTTCT
TGGTGAAGGGAGCCACGGCGGTGCTGTCTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78816:336..467-

>mRNA_M-pyrifera_M_contig78816.18516.1 ID=mRNA_M-pyrifera_M_contig78816.18516.1|Name=mRNA_M-pyrifera_M_contig78816.18516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig78816:336..467- (Macrocystis pyrifera P11B4 male)
AACCTCCCCCATTCGCTCCGCCAGCTTCTCCTCCAACTCTCGTCGGTCCA
GGGGGACGTTTTTGATAACGATGAGGAGAAGAAGGCCTACGCGTCTTTCT
TGGTGAAGGGAGCCACGGCGGTGCTGTCTTCTAACCTCCCCCATTCGCTC
CGCCAGCTTCTCCTCCAACTCTCGTCGGTCCAGGGGGACGTTTTTGATAA
CGATGAGGAGAAGAAGGCCTACGCGTCTTTCTTGGTGAAGGGAGCCACGG
CGGTGCTGTCTTCT
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