mRNA_M-pyrifera_M_contig78787.18513.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78787.18513.1
Unique NamemRNA_M-pyrifera_M_contig78787.18513.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78787.18513.1 vs. uniprot
Match: A0A517PXG9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PXG9_9PLAN)

HSP 1 Score: 545 bits (1405), Expect = 1.490e-194
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1 
Query:    1 SVSLLAISRILRWWLRGKTNEQKIIDRHISELLDKFRQVCFPELPPNTPIDHNRVTLFKHVDFKFWMWPFKGLFNPWGYWLGPWSGWLCVIYRSGHVTQDGTTVFLAPDAAQNSEGVAGQTWRRGAYRVGSEGSKLPDLNGEEYISFVGRLWFKTIRWLNISSTKAERFDKLDRRVRDYAKNTNTSVESVWQRLKKRKTCPTSILGVTIRDEKKECWGVLVMDSSNEHSCIDTTEKKFRDGLSLLNRELRRYGIFEG 771
            SVSLLAISRILRWWLRGKTNEQKIIDRHISELLDKFRQVCFPELPPNTPIDHNRVTLFKHVDFKFWMWPFKGLFNPWGYWLGPWSGWLCVIYRSGHVTQDGTTVFLAPDAAQNSEGVAGQTWRRGAYRVGSEGSKLPDLNGEEYISFVGRLWFKTIRWLNISSTKAERFDKLDRRVRDYAKNTNTSVESVWQRLKKRKTCPTSILGVTIRDEKKECWGVLVMDSSNEHSCIDTTEKKFRDGLSLLNRELRRYGIFEG
Sbjct:   58 SVSLLAISRILRWWLRGKTNEQKIIDRHISELLDKFRQVCFPELPPNTPIDHNRVTLFKHVDFKFWMWPFKGLFNPWGYWLGPWSGWLCVIYRSGHVTQDGTTVFLAPDAAQNSEGVAGQTWRRGAYRVGSEGSKLPDLNGEEYISFVGRLWFKTIRWLNISSTKAERFDKLDRRVRDYAKNTNTSVESVWQRLKKRKTCPTSILGVTIRDEKKECWGVLVMDSSNEHSCIDTTEKKFRDGLSLLNRELRRYGIFEG 314
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BLAST of mRNA_M-pyrifera_M_contig78787.18513.1 vs. uniprot
Match: A0A355GIY5_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GIY5_9PLAN)

HSP 1 Score: 428 bits (1100), Expect = 3.980e-148
Identity = 200/257 (77.82%), Postives = 224/257 (87.16%), Query Frame = 1 
Query:    1 SVSLLAISRILRWWLRGKTNEQKIIDRHISELLDKFRQVCFPELPPNTPIDHNRVTLFKHVDFKFWMWPFKGLFNPWGYWLGPWSGWLCVIYRSGHVTQDGTTVFLAPDAAQNSEGVAGQTWRRGAYRVGSEGSKLPDLNGEEYISFVGRLWFKTIRWLNISSTKAERFDKLDRRVRDYAKNTNTSVESVWQRLKKRKTCPTSILGVTIRDEKKECWGVLVMDSSNEHSCIDTTEKKFRDGLSLLNRELRRYGIFEG 771
            SV LLA+SR+ RW LR KT EQ+IIDRHIS+LLDKFRQVCFPELP NT +DHNRVTLFKHVDFKFW+WPFK L NPWGYWL      LCVIYRSGH+TQDG TVFLAPDAAQNSEG+AGQ WR GAYRVGSE +KLPDLNG++Y+  + RLW KTI+ L +SS KA+ +DKLDR+V+DYA+NTNTSV+SVWQRLKK KTCPTSILGV IR+EKKECWGVLVMDSSN +SCIDT+EKKFR  LS LNRELRRYGIFEG
Sbjct:   58 SVLLLAMSRLFRWSLREKTPEQRIIDRHISDLLDKFRQVCFPELPQNTAVDHNRVTLFKHVDFKFWVWPFKKLLNPWGYWLXXXXXXLCVIYRSGHITQDGATVFLAPDAAQNSEGIAGQAWRSGAYRVGSEENKLPDLNGDKYVGLISRLWLKTIKLLKVSSAKADEYDKLDRKVKDYARNTNTSVKSVWQRLKKGKTCPTSILGVIIRNEKKECWGVLVMDSSNGYSCIDTSEKKFRAELSTLNRELRRYGIFEG 314
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BLAST of mRNA_M-pyrifera_M_contig78787.18513.1 vs. uniprot
Match: A0A517PXH0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PXH0_9PLAN)

HSP 1 Score: 131 bits (329), Expect = 4.140e-34
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 2 
Query:  785 MTDWLDLDIERLSKPKHDTRNGVDISFDLSPFDIPEAIRSRFDESDDRIVIEFKYLDDSEEESNE 979
            MTDWLDLDIERLSKPKHDTRNGVDISFDLSPFDIPEAIRSRFDESDDRIVIEFKYLDDSEEESNE
Sbjct:    1 MTDWLDLDIERLSKPKHDTRNGVDISFDLSPFDIPEAIRSRFDESDDRIVIEFKYLDDSEEESNE 65
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BLAST of mRNA_M-pyrifera_M_contig78787.18513.1 vs. uniprot
Match: A0A355GJT4_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GJT4_9PLAN)

HSP 1 Score: 119 bits (298), Expect = 2.110e-29
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 2 
Query:  755 MESLKGKDGSMTDWLDLDIERLSKPKHDTRNGVDISFDLSPFDIPEAIRSRFDESDDRIVIEFKYLDDSEEESNE 979
            MESLKG+   M++W+DLDIERLSKP H T+NGVDISFDLSPFDIPEAIRS FD+ D+RIV+EFKYLDDS EE+NE
Sbjct:    1 MESLKGEVAPMSEWIDLDIERLSKPTHATQNGVDISFDLSPFDIPEAIRSHFDQVDNRIVVEFKYLDDSAEETNE 75
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BLAST of mRNA_M-pyrifera_M_contig78787.18513.1 vs. uniprot
Match: UPI001C830311 (hypothetical protein n=1 Tax=Alcaligenes faecalis TaxID=511 RepID=UPI001C830311)

HSP 1 Score: 78.6 bits (192), Expect = 3.760e-13
Identity = 64/242 (26.45%), Postives = 106/242 (43.80%), Query Frame = 1 
Query:   37 WWLRGKTNEQKIIDRHISELLDKFRQVCF--PELPPNTPIDHNRVTLFKHV-DFKFWMWPFKGLFNPWGYWLGPWSGWLCVIYRSGHVTQDGTTVFLAPDAAQNSEGVAGQTWRRGAYRVGSEGSKLPDLNGEEYISFVGRLWFKTIRWLNISSTKAERFDKLDRRVRDYAKNTNTSVESVWQRLKKRKTCPTSILGVTIRDEKKECWGVLVMDSSNEHSCIDTTEKKFRDGLSLLNRELRR 753
            W +  K +    +   I  +LD++++  F     PP+TP DHNRVTLF+H   F    W     + PWG    P+S +L  + RSGH+++     F   D +  +EG+AG+ W  G     ++   LP ++                     S++K       DR  + YA  T   V  +   + + +  P SI+   +    K  WG++V+DS       D+  K +R  ++L+   L R
Sbjct:   52 WAVFYKRSGDPWLVEKIQFILDRYQEGAFNLDGCPPDTPKDHNRVTLFRHQRGFFVKHWSATQWYWPWGRHY-PFSSFLVPVLRSGHMSKKTAIAFHVSDDSDKTEGIAGKAWACGEALCVTD---LPVMD---------------------SNSK-------DRPKKLYAGKTYCDVRMIEDYISRSRNMPCSIVATPVERHGK-IWGIVVVDSRYPQGVTDSAVKNYRLTVALIGHLLER 260
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78787.18513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A517PXG9_9PLAN1.490e-194100.00Uncharacterized protein n=2 Tax=Gimesia chilikensi... [more]
A0A355GIY5_9PLAN3.980e-14877.82Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517PXH0_9PLAN4.140e-34100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A355GJT4_9PLAN2.110e-2977.33Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
UPI001C8303113.760e-1326.45hypothetical protein n=1 Tax=Alcaligenes faecalis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78787contigM-pyrifera_M_contig78787:3..981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size979
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78787.18513.1prot_M-pyrifera_M_contig78787.18513.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78787 208..783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.8994148-UTR-M-pyrifera_M_contig78787:2..2071622816690.8994148-UTR-M-pyrifera_M_contig78787:2..207Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78787 3..207 -
1692278122.0392246-UTR-M-pyrifera_M_contig78787:2..2071692278122.0392246-UTR-M-pyrifera_M_contig78787:2..207Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78787 3..207 -
1622816690.9262633-UTR-M-pyrifera_M_contig78787:783..9811622816690.9262633-UTR-M-pyrifera_M_contig78787:783..981Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78787 784..981 -
1692278122.068081-UTR-M-pyrifera_M_contig78787:783..9811692278122.068081-UTR-M-pyrifera_M_contig78787:783..981Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78787 784..981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.9121134-CDS-M-pyrifera_M_contig78787:207..7831622816690.9121134-CDS-M-pyrifera_M_contig78787:207..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78787 208..783 -
1692278122.0569293-CDS-M-pyrifera_M_contig78787:207..7831692278122.0569293-CDS-M-pyrifera_M_contig78787:207..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78787 208..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78787.18513.1

>prot_M-pyrifera_M_contig78787.18513.1 ID=prot_M-pyrifera_M_contig78787.18513.1|Name=mRNA_M-pyrifera_M_contig78787.18513.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
MWPFKGLFNPWGYWLGPWSGWLCVIYRSGHVTQDGTTVFLAPDAAQNSEG
VAGQTWRRGAYRVGSEGSKLPDLNGEEYISFVGRLWFKTIRWLNISSTKA
ERFDKLDRRVRDYAKNTNTSVESVWQRLKKRKTCPTSILGVTIRDEKKEC
WGVLVMDSSNEHSCIDTTEKKFRDGLSLLNRELRRYGIFEG*
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mRNA from alignment at M-pyrifera_M_contig78787:3..981-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78787.18513.1 ID=mRNA_M-pyrifera_M_contig78787.18513.1|Name=mRNA_M-pyrifera_M_contig78787.18513.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=979bp|location=Sequence derived from alignment at M-pyrifera_M_contig78787:3..981- (Macrocystis pyrifera P11B4 male)
TCAGTATCTCTTTTAGCAATTTCCCGTATTCTACGTTGGTGGCTAAGAGG
AAAAACAAATGAACAAAAAATAATAGATCGCCACATTTCTGAGTTACTAG
ATAAGTTTAGGCAGGTTTGTTTTCCTGAACTCCCTCCAAACACACCAATT
GATCATAACCGCGTAACTCTTTTTAAGCATGTAGACTTTAAGTTCTGGAT
GTGGCCATTTAAAGGTCTGTTTAATCCTTGGGGATATTGGCTGGGGCCAT
GGTCTGGATGGTTGTGTGTAATTTATCGCTCTGGGCATGTGACTCAGGAT
GGTACCACTGTTTTTTTAGCACCAGACGCAGCACAGAATTCAGAAGGAGT
TGCCGGACAGACTTGGAGGAGGGGGGCGTATCGGGTAGGAAGTGAAGGAA
GCAAGTTGCCAGATTTAAATGGGGAAGAATACATAAGCTTTGTCGGTCGG
CTATGGTTCAAAACAATTAGATGGTTAAATATCTCATCAACAAAAGCTGA
GAGATTCGATAAACTAGATAGAAGAGTGAGAGATTATGCAAAAAACACGA
ACACCTCAGTAGAATCAGTATGGCAGCGATTAAAAAAAAGAAAAACGTGC
CCTACGTCTATCCTTGGGGTTACAATTAGAGATGAGAAAAAAGAATGTTG
GGGAGTCTTGGTCATGGATAGCTCTAATGAGCATTCATGTATTGATACGA
CCGAAAAAAAATTTCGTGATGGCTTAAGTTTATTAAACAGAGAACTGCGC
CGTTATGGAATCTTTGAAGGGTAAGGATGGTTCTATGACTGATTGGCTTG
ACTTAGATATTGAGCGATTGAGTAAACCAAAGCACGATACTCGAAATGGC
GTTGATATTTCATTTGATCTATCCCCTTTTGATATTCCGGAAGCTATTCG
GAGCCGTTTTGATGAGAGTGATGATCGGATTGTGATCGAGTTTAAGTATC
TTGATGACTCTGAAGAAGAATCGAATGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78787:3..981-

>mRNA_M-pyrifera_M_contig78787.18513.1 ID=mRNA_M-pyrifera_M_contig78787.18513.1|Name=mRNA_M-pyrifera_M_contig78787.18513.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig78787:3..981- (Macrocystis pyrifera P11B4 male)
ATGTGGCCATTTAAAGGTCTGTTTAATCCTTGGGGATATTGGCTGGGGCC
ATGGTCTGGATGGTTGTGTGTAATTTATCGCTCTGGGCATGTGACTCAGG
ATGGTACCACTGTTTTTTTAGCACCAGACGCAGCACAGAATTCAGAAGGA
GTTGCCGGACAGACTTGGAGGAGGGGGGCGTATCGGGTAGGAAGTGAAGG
AAGCAAGTTGCCAGATTTAAATGGGGAAGAATACATAAGCTTTGTCGGTC
GGCTATGGTTCAAAACAATTAGATGGTTAAATATCTCATCAACAAAAGCT
GAGAGATTCGATAAACTAGATAGAAGAGTGAGAGATTATGCAAAAAACAC
GAACACCTCAGTAGAATCAGTATGGCAGCGATTAAAAAAAAGAAAAACGT
GCCCTACGTCTATCCTTGGGGTTACAATTAGAGATGAGAAAAAAGAATGT
TGGGGAGTCTTGGTCATGGATAGCTCTAATGAGCATTCATGTATTGATAC
GACCGAAAAAAAATTTCGTGATGGCTTAAGTTTATTAAACAGAGAACTGC
GCCGTTATGGAATCTTTGAAGGGTAAATGTGGCCATTTAAAGGTCTGTTT
AATCCTTGGGGATATTGGCTGGGGCCATGGTCTGGATGGTTGTGTGTAAT
TTATCGCTCTGGGCATGTGACTCAGGATGGTACCACTGTTTTTTTAGCAC
CAGACGCAGCACAGAATTCAGAAGGAGTTGCCGGACAGACTTGGAGGAGG
GGGGCGTATCGGGTAGGAAGTGAAGGAAGCAAGTTGCCAGATTTAAATGG
GGAAGAATACATAAGCTTTGTCGGTCGGCTATGGTTCAAAACAATTAGAT
GGTTAAATATCTCATCAACAAAAGCTGAGAGATTCGATAAACTAGATAGA
AGAGTGAGAGATTATGCAAAAAACACGAACACCTCAGTAGAATCAGTATG
GCAGCGATTAAAAAAAAGAAAAACGTGCCCTACGTCTATCCTTGGGGTTA
CAATTAGAGATGAGAAAAAAGAATGTTGGGGAGTCTTGGTCATGGATAGC
TCTAATGAGCATTCATGTATTGATACGACCGAAAAAAAATTTCGTGATGG
CTTAAGTTTATTAAACAGAGAACTGCGCCGTTATGGAATCTTTGAAGGGT
AA
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