mRNA_M-pyrifera_M_contig78784.18511.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78784.18511.1
Unique NamemRNA_M-pyrifera_M_contig78784.18511.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78784.18511.1 vs. uniprot
Match: A0A813A1V5_9DINO (Rnh1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1V5_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 2.820e-10
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   13 EDAQLVQICVDGELGSGQCRALCAALLGRGVGMKDHGYAPLKSMRFWSSGLGDAGAGSIAQVLLGGP 213
            E   + Q+CVD +LG+   RAL AA+LG+G GMK H Y  L+S+RFW +  GDAG  ++A +L  GP
Sbjct:   50 EAEHIQQVCVDSKLGALGTRALAAAVLGKGQGMKSH-YPFLRSLRFWEAETGDAGVAAVAALLKVGP 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78784.18511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A813A1V5_9DINO2.820e-1049.25Rnh1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78784contigM-pyrifera_M_contig78784:729..944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.824027-CDS-M-pyrifera_M_contig78784:728..9441622816690.824027-CDS-M-pyrifera_M_contig78784:728..944Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78784 729..944 +
1692278122.0083437-CDS-M-pyrifera_M_contig78784:728..9441692278122.0083437-CDS-M-pyrifera_M_contig78784:728..944Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78784 729..944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78784.18511.1prot_M-pyrifera_M_contig78784.18511.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78784 729..944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78784.18511.1

>prot_M-pyrifera_M_contig78784.18511.1 ID=prot_M-pyrifera_M_contig78784.18511.1|Name=mRNA_M-pyrifera_M_contig78784.18511.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
EDAPEDAQLVQICVDGELGSGQCRALCAALLGRGVGMKDHGYAPLKSMRF
WSSGLGDAGAGSIAQVLLGGPS
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mRNA from alignment at M-pyrifera_M_contig78784:729..944+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78784.18511.1 ID=mRNA_M-pyrifera_M_contig78784.18511.1|Name=mRNA_M-pyrifera_M_contig78784.18511.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig78784:729..944+ (Macrocystis pyrifera P11B4 male)
GAGGACGCTCCGGAGGATGCGCAGTTGGTTCAGATTTGCGTGGATGGAGA
GTTGGGGAGTGGTCAGTGTCGTGCCTTGTGTGCTGCTTTGCTCGGTCGCG
GCGTGGGGATGAAAGACCACGGGTATGCTCCTCTGAAGAGCATGCGGTTT
TGGTCGTCGGGGCTTGGGGATGCGGGTGCCGGGAGCATTGCCCAGGTGCT
CTTGGGTGGGCCTTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78784:729..944+

>mRNA_M-pyrifera_M_contig78784.18511.1 ID=mRNA_M-pyrifera_M_contig78784.18511.1|Name=mRNA_M-pyrifera_M_contig78784.18511.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig78784:729..944+ (Macrocystis pyrifera P11B4 male)
GAGGACGCTCCGGAGGATGCGCAGTTGGTTCAGATTTGCGTGGATGGAGA
GTTGGGGAGTGGTCAGTGTCGTGCCTTGTGTGCTGCTTTGCTCGGTCGCG
GCGTGGGGATGAAAGACCACGGGTATGCTCCTCTGAAGAGCATGCGGTTT
TGGTCGTCGGGGCTTGGGGATGCGGGTGCCGGGAGCATTGCCCAGGTGCT
CTTGGGTGGGCCTTCGGAGGACGCTCCGGAGGATGCGCAGTTGGTTCAGA
TTTGCGTGGATGGAGAGTTGGGGAGTGGTCAGTGTCGTGCCTTGTGTGCT
GCTTTGCTCGGTCGCGGCGTGGGGATGAAAGACCACGGGTATGCTCCTCT
GAAGAGCATGCGGTTTTGGTCGTCGGGGCTTGGGGATGCGGGTGCCGGGA
GCATTGCCCAGGTGCTCTTGGGTGGGCCTTCG
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