mRNA_M-pyrifera_M_contig7878.18508.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7878.18508.1
Unique NamemRNA_M-pyrifera_M_contig7878.18508.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7878.18508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7878contigM-pyrifera_M_contig7878:9370..9853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size484
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.6995494-CDS-M-pyrifera_M_contig7878:9369..97021622816690.6995494-CDS-M-pyrifera_M_contig7878:9369..9702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7878 9370..9702 +
1692278121.9316862-CDS-M-pyrifera_M_contig7878:9369..97021692278121.9316862-CDS-M-pyrifera_M_contig7878:9369..9702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7878 9370..9702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.7117183-UTR-M-pyrifera_M_contig7878:9702..98531622816690.7117183-UTR-M-pyrifera_M_contig7878:9702..9853Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7878 9703..9853 +
1692278121.9426336-UTR-M-pyrifera_M_contig7878:9702..98531692278121.9426336-UTR-M-pyrifera_M_contig7878:9702..9853Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7878 9703..9853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7878.18508.1prot_M-pyrifera_M_contig7878.18508.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7878 9370..9702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7878.18508.1

>prot_M-pyrifera_M_contig7878.18508.1 ID=prot_M-pyrifera_M_contig7878.18508.1|Name=mRNA_M-pyrifera_M_contig7878.18508.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MKTNRGNAAWPSPSLPRLPHLTPFYGCIKKQRLCYLATPIVCRNDPSRRR
RRYRNWIKGRQQPLPKTDYTGGKNLHEEEATTASSPPSSTPESRTVLPRI
IKYSIQVQQP*
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mRNA from alignment at M-pyrifera_M_contig7878:9370..9853+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7878.18508.1 ID=mRNA_M-pyrifera_M_contig7878.18508.1|Name=mRNA_M-pyrifera_M_contig7878.18508.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=484bp|location=Sequence derived from alignment at M-pyrifera_M_contig7878:9370..9853+ (Macrocystis pyrifera P11B4 male)
ATGAAGACAAATAGAGGCAACGCCGCTTGGCCGTCTCCTTCTCTGCCACG
CCTCCCACACTTGACACCGTTCTACGGCTGTATTAAAAAGCAGCGACTTT
GCTATTTGGCGACGCCGATCGTATGTCGGAATGACCCAAGCAGGCGACGT
CGGCGTTACAGAAACTGGATAAAGGGGAGGCAACAACCGTTACCAAAAAC
AGACTACACTGGTGGTAAAAACCTTCATGAAGAGGAGGCAACAACCGCAT
CTTCACCACCATCTTCAACTCCCGAATCCAGGACTGTTCTGCCGCGGATT
ATCAAATATTCAATACAAGTACAACAGCCGTAACTTGGCGAAGGCTGTTG
AGACTCGGGGCCCACAGCATCACTCGTAATGCTCGTGAGGTAGAGCTACG
GCAGAAAGCTAGGCGTCTCCTGCCATAGTGCACCAGCACGTTTACTCGGC
AGACCGGCCATGGCCACCCTGACACCAAGAGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7878:9370..9853+

>mRNA_M-pyrifera_M_contig7878.18508.1 ID=mRNA_M-pyrifera_M_contig7878.18508.1|Name=mRNA_M-pyrifera_M_contig7878.18508.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig7878:9370..9853+ (Macrocystis pyrifera P11B4 male)
ATGAAGACAAATAGAGGCAACGCCGCTTGGCCGTCTCCTTCTCTGCCACG
CCTCCCACACTTGACACCGTTCTACGGCTGTATTAAAAAGCAGCGACTTT
GCTATTTGGCGACGCCGATCGTATGTCGGAATGACCCAAGCAGGCGACGT
CGGCGTTACAGAAACTGGATAAAGGGGAGGCAACAACCGTTACCAAAAAC
AGACTACACTGGTGGTAAAAACCTTCATGAAGAGGAGGCAACAACCGCAT
CTTCACCACCATCTTCAACTCCCGAATCCAGGACTGTTCTGCCGCGGATT
ATCAAATATTCAATACAAGTACAACAGCCGTAAATGAAGACAAATAGAGG
CAACGCCGCTTGGCCGTCTCCTTCTCTGCCACGCCTCCCACACTTGACAC
CGTTCTACGGCTGTATTAAAAAGCAGCGACTTTGCTATTTGGCGACGCCG
ATCGTATGTCGGAATGACCCAAGCAGGCGACGTCGGCGTTACAGAAACTG
GATAAAGGGGAGGCAACAACCGTTACCAAAAACAGACTACACTGGTGGTA
AAAACCTTCATGAAGAGGAGGCAACAACCGCATCTTCACCACCATCTTCA
ACTCCCGAATCCAGGACTGTTCTGCCGCGGATTATCAAATATTCAATACA
AGTACAACAGCCGTAA
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