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Homology
BLAST of mRNA_M-pyrifera_M_contig7872.18499.1 vs. uniprot
Match: A0A6H5JMD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMD5_9PHAE) HSP 1 Score: 196 bits (498), Expect = 4.980e-58 Identity = 115/167 (68.86%), Postives = 126/167 (75.45%), Query Frame = 1
Query: 1 MFSLNVNAPIFTPSYG------QPIFNDGHLSAVRILDSDEYRSEFL-HDFNREEVADEDLFNPAIYPVSAEDHEELAAVEAFNREMAELEDLEHQEELRSLLQDRISALQHGALS-QRPAKIASLEGGVFSAGHSRGAPSVGYKGKRMSASKKCNHNINQPLQSSR 477
MF+LN NAP F PS +PIFN G S V ILDSDEYRSEFL + FNRE VADEDLFNPA+YPVSA DHEEL A E FNREMAELE LEHQEELRSLLQ RISALQ G QRPAKIAS+ +FS G SRGAP+ G KGKR + +KKC HNINQPL++ R
Sbjct: 1 MFTLNANAPSFVPSNPVHQQMVRPIFNSGVPSCVLILDSDEYRSEFLVNTFNREAVADEDLFNPAVYPVSAADHEELTAAENFNREMAELEALEHQEELRSLLQARISALQQGTSGKQRPAKIASMNSAMFS-GLSRGAPASGLKGKRFNPAKKCPHNINQPLETGR 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-21_006490.1 |
Exons | 5 |
Model size | 1216 |
Cds size | 486 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816690.2775433-UTR-M-pyrifera_M_contig7872:391..1121 | 1622816690.2775433-UTR-M-pyrifera_M_contig7872:391..1121 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7872 392..1121 - |
1692278121.7535415-UTR-M-pyrifera_M_contig7872:391..1121 | 1692278121.7535415-UTR-M-pyrifera_M_contig7872:391..1121 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7872 392..1121 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816690.2942283-CDS-M-pyrifera_M_contig7872:1121..1196 | 1622816690.2942283-CDS-M-pyrifera_M_contig7872:1121..1196 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 1122..1196 - |
1692278121.7651262-CDS-M-pyrifera_M_contig7872:1121..1196 | 1692278121.7651262-CDS-M-pyrifera_M_contig7872:1121..1196 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 1122..1196 - |
1622816690.3109405-CDS-M-pyrifera_M_contig7872:3810..3917 | 1622816690.3109405-CDS-M-pyrifera_M_contig7872:3810..3917 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 3811..3917 - |
1692278121.7756093-CDS-M-pyrifera_M_contig7872:3810..3917 | 1692278121.7756093-CDS-M-pyrifera_M_contig7872:3810..3917 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 3811..3917 - |
1622816690.3305304-CDS-M-pyrifera_M_contig7872:6354..6462 | 1622816690.3305304-CDS-M-pyrifera_M_contig7872:6354..6462 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 6355..6462 - |
1692278121.786329-CDS-M-pyrifera_M_contig7872:6354..6462 | 1692278121.786329-CDS-M-pyrifera_M_contig7872:6354..6462 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 6355..6462 - |
1622816690.348583-CDS-M-pyrifera_M_contig7872:6722..6757 | 1622816690.348583-CDS-M-pyrifera_M_contig7872:6722..6757 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 6723..6757 - |
1692278121.7973883-CDS-M-pyrifera_M_contig7872:6722..6757 | 1692278121.7973883-CDS-M-pyrifera_M_contig7872:6722..6757 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 6723..6757 - |
1622816690.364561-CDS-M-pyrifera_M_contig7872:7001..7162 | 1622816690.364561-CDS-M-pyrifera_M_contig7872:7001..7162 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 7002..7162 - |
1692278121.8060145-CDS-M-pyrifera_M_contig7872:7001..7162 | 1692278121.8060145-CDS-M-pyrifera_M_contig7872:7001..7162 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7872 7002..7162 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7872.18499.1 >prot_M-pyrifera_M_contig7872.18499.1 ID=prot_M-pyrifera_M_contig7872.18499.1|Name=mRNA_M-pyrifera_M_contig7872.18499.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
MFSLNVNAPIFTPSYGQPIFNDGHLSAVRILDSDEYRSEFLHDFNREEVA DEDLFNPAIYPVSAEDHEELAAVEAFNREMAELEDLEHQEELRSLLQDRI SALQHGALSQRPAKIASLEGGVFSAGHSRGAPSVGYKGKRMSASKKCNHN INQPLQSSRNN* back to topmRNA from alignment at M-pyrifera_M_contig7872:392..7162- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig7872.18499.1 ID=mRNA_M-pyrifera_M_contig7872.18499.1|Name=mRNA_M-pyrifera_M_contig7872.18499.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6771bp|location=Sequence derived from alignment at M-pyrifera_M_contig7872:392..7162- (Macrocystis pyrifera P11B4 male) ATGTTTTCTCTGAACGTTAACGCGCCTATTTTCACTCCGTCGTATGGCCA
GCCCATCTTCAACGACGGTCATTTGAGTGCTGTGCGGATCCTGGATTCCG
ACGAATATCGCTCCGAATTTCTGCACGATTTCAATCGCGAAGAGGTCGCC
GACGAAGACCTGTGAGTCCCGACCCTCTAGTTTGTTCGTGCTGTACTTCG
TCGTGTGCATGTGCTGGCAGCAACACTACTTTGGTGCTGGAAGGTGGCGG
CTGGGCGCGCCGTTTTGGGAAGAGAGCTCAGCATGAAATTTGTGTTTTTG
TGCAGAATCTGTGAAATATCCTTCTCTCTGGACTTCTTACCGAAGCAGTG
TTCCGCCGATACCTGATCATGCTCCACGTGTCTGTCGCCCTACCTGCTTG
GCCAGGTTCAACCCTGCGATCTACCCTGTCTCCGCAGAAGGTGAGGCCCC
CTTCGCTACTGTAGTGCTATCGCGCGCGCGTATGGAAAAGTGGCTCTGCT
TTTCGTCAGCAGCAGAAATCCTGGTGTGGAAGCAGGGTTTGCTTGGGGTC
CTGGGTTTGATTTTGATTGATTAGATGCGCGCCTGCTTTTGCCTTCCCCC
CGCTTCGAGTACCTGAGCAGACTCGCGCGCGCGATCCGACCTGCATCCTC
ATGCGTGCATGTGCCTTGACAACTCCTTCCTTCTGTCCCCCTCCTTGCAG
ACCACGAAGAGCTTGCAGCAGTAGAAGCTTTCAACAGGGAGATGGCCGAG
CTTGAAGACCTTGAACACCAAGAGGAGCTGAGGTCGTTGCTTCAAGACAG
GATTAGCGGTGAGGCTACGATATTTATACAGTCAATCAGTCCCAATTTTG
GAAGATCCTCATTTCTAAATTTATTGCTCGAACGCCCACTTCCCCCTGCC
AGCACACAGCACCGCCGTGTTGGTGCTGTGTCGCTGTCGCCGAGTGCAAA
GCAGAGCCAGTGCGTCGATGGACACAAAGCCGAGTGTCCTGCGTTTGTGC
CCGACGAGTTTCGGGCGTGGGCAGTGGTTTGTGCGTACATATGAAGCAAG
TTTTATTGCATGCATGCGCCGAAATTCGGAGAAAGAACATTTCGTTTTCA
TTCAACTGCAGAGTTCAACAGCAGTTCCGCATCACGCATCAAACAGCAAG
TGTTCCGTGCCAACAGCTGCTGCAGGCGGTCAGTCAAGTTGTCTTTGCGT
GAATTGTAAAGTCAATGTTGCCGTTCGAACGCTGTTTTTCGTTGCTTCAT
CTGTCAGCTCCCAAGTTTACTCACTTTTTGCTCACTGCTGCCTGGTTTGA
CTTGCTGACAGCTGACATGCGTTTGACCTTTGAGAAATCGTATTAAGAAA
TAAGAACTTCCCATCCCACACGCTTTATTTTTTATTTTGTACCCCTGTTT
CCTGTCCTGTCCCCTATCTGACACTGTCATTAATAATAGTACCAGTACAT
TACATGTGCAGTTTTTAATACTGCTGTAGTCTTAATAGGAGAGCAGTACA
TACGTATCAGGTACCTGGTACGTATCTATCGTAAGAATCACGGCCAGGCT
CCGATTGTTCTGTCTAAGATCAATACCTGGTATGCTTTACTCGCCTGCTC
GACCGTGCACCCACCACCGCCATGCATGATACTCGTATCAACATCCATAC
CAGGTATCATGCGATACAGCACGTAGTTGTTAATATCAACATTAATCATT
AATAGTATGTACGACGTCGTACAGCAGTACATAAAATACCTTCGCTTGAA
ACGTCCCGCATGTTGGTTGTTTCGTGGATGTGCATGTGGTATATATGCAT
TTCGTACTCATCTCATATCATGCCAGGTACGTACGTGGCAGCACAGCAGC
GTACCAGGTACCAGGTATACAGCAGCTGCAGATCGGCTGCGTTCTCCCTC
TTGCGGAAGTAATGTAGAGAGAGAGACTATTTTGCGCTACAGCAGTGGCG
GGACGTATTTAAGGCGACTCCGTGCGAAGACTTTTGACCGCCTTATCTCG
AGTAGTCGCCTTATACTCTAATAATAATGAGGCCGTTACCTCCCTCTTGA
GGTGTTGCAATCCCCTGAACAAGGCGAGCACCGCCCTTTTTTTTCTTTTT
CTTTTTTAGCGTTACTTTCACTTTCGATTAACTCTGAGAGTTTTTACCTT
CAACGGTCTTGCTCTGGACAAGCCGTGGTCACAGGTGTCGTCCCTTTCCC
CCCCCCCGGGTACATGCCTTCATTTTTATCGCGCATACATAGCATGCAGC
ATTCCCACTGCTCGTCGATTTTCATCGAATGTAGCTAACTAACGCCATTC
AGGGAATACTACGTTTTAGTGCACAACTGTAGTACAGTAGTGTGCTGCTG
ACCCTACATATGATACAGATTGCTGAACAGAGGGAGACTCGTGCTCGGAG
AAGTCAGTACATCATTCCAGCGGTAGCAGGCACTACTGTACGCAACCCAG
TGAACACGTGTGATATCAAACGCACACAAGACCACAGGAGAGCAGACAGA
TAGATCAACACACGGTTTTTATGTTACGAAGTACTAGGTACTGTATTATT
AATAGTAGAGCTGCAAGCGACAGAGCCTGCTCAAGATGATTTCTCTCAGC
AGAGGGAGCAGCAGCAGAGCGAGGTTTGTACTGACGTGGAGGCAGGAATG
GGCCGTGAACGAGGCGTATGACGCCTCATGTAGGGCCCAGGGGCTATATA
TAAGGCGGTAGCCGCCTTGATGAGAGTTCCAGCCGTACCAGCCGATTTTG
CCACCTTTTCTCGAGTGATGGCCTTATTCATGTCGCCTGATGTAAGCCCC
ACTACTGACAGTTGTATTGCAAGACCTGCAGCTGCAGTACATGACAACCC
GTACATCTGGTGTACAATCAAGACTAGAGGACACGTGTGAAAATTAGTCA
CAAGGACTTGATAAGAAAGGCGGGCTGAGATTTTCAGGTTACTAAGAAAC
TCGGGAGGCATTGTTCTGAAGTTTGTGTATAACGCACCCATTCTCGAATA
AGAAATCCAGCCTGGACCGGCTTTCCTGTTTCTTATTAGGTGTCCTGTAT
TATAGGTACAGAATATGATAGGCACTCGTACATATAATACCAACAGCAGT
AACTTCTGCGGTACTGCTGTAGGCTTGTGCATGTTGTGGTGCTTGTGCTG
CTAAGCGTCTTTGCTATGTATGCATGTTGTGCACCTGCTCATACTTGCCC
AACATCTGTTTTCGTTTTCCCTTTGATGGTTCTCTGCCGTGACAGCCCTC
CAGCACGGAGCATTGAGTCAGAGGCCAGCGAAGATCGCGTCCTTAGAAGG
CGGCGTCTTCTCCGCGGGGCACTCAAGAGGCGCACCATCCGTGGGATACA
AGGTGAGACCCCCTATACTATTGTGTGTAAGAGAGCGGCAGCCGAGCTTT
TAATAGCAGACGCAGAAGCGAAGGAAAGCCTTCTGCCATTGCTGCATTTG
CTGTGAAGGGCAGGACGTGCTCGCACAGTCCACCCAACCGTATCTCAGCA
CGCGTAAAACACTCGGTGGAAGCGCGTGGGCCGATCTCACCCCGACATGT
CATCGCTGACGAGACACCTTTTATGTCACGTGTGCCTCTCCCATACCAGA
TGTACCAGGTATATAATCATAGCTCACATCTGCGTATTTGTCCGTTGTCA
CCCTGTCATCACCCTGTCACAATACAACAAAGTAGCAACAGCAGTGAAGA
TGATGTGCAAATTGAACCTCTTTCCTCCTATTATGCACTGATATGAATAG
TATATGTGAATGTGAAACCAGTACCAGGTATATCATATTTACCAGTATGT
AATACATACCAACATATTACCAGTGCCAGAAAAATATGTACCAGTAATAA
TGAGCAAATATTTTACGATCGACGATTAACCCATGTGGAATCTAGTACTG
TATGTTGTCTGTTGTGTAGTAGACATGGACAAACAACGCCAGAAATGCGA
TCTTATCAATCAAACCTCTACGCTTGGTCTACGTAAACTAGTGTAGGTTT
CTCTTTGATGGCATTCGGACGGGGGATTACGGGGTGACGCAAGATGAAAC
CTGATGACCGATGTCTTTTTGTGCAGCTGAAAAAAAATGAAAGGCCCAGC
GCAAAGAACGGAAAGGCTAACGCATGAACGACCGAAGGAAATCGGTACGC
AGCACGATTGTCAGACCCATGTTTATGTTTATGCGAGGAATGCTTAACAA
TATTAATATTAATAGTGGTGCGACTACTGCGACGCCAGCGAGGCCGGTAT
ACGGCGACGGCTCATGCGTAACACAGAAGCAGTCACCCACCCACTTCAGT
AGTTACCATGATAGGAAGAGCATGTAGCAGCGCGAGTATCGGCGTGCTGC
GTGAGTGTCGTGTACGGGTAGCTTTTATTATTGCGATCATCCCCTACCCC
CTATCCCAGCAGGCTATTGTAAGCACACTGCCCACAAAACACAAAGAAAA
ACTCCCGACAACAAGGACACTCGAACCACGTCTGCCACCGTTATTTTTCC
TTAGGACGTTTCGTTTATCTGCTCTATATGGCTCCGAACGTTCCCATCGA
GCCAAAATTTAGCAGGGCAGATATGAGCTCGTTGGTGCACTCCCGTGAGT
GTGTCAAAGCGACAGCACTTTCCGTGTCCTCCTTCGGGCCGGACCTTGTC
GCAGAAGCTTGAAAATGTGTTTTCAGGCGCTTGAATTCTCGGTTTCTCGT
TCAGTATCCAAGTTTTTTTTTTTTCTGCTGTAGAACGTGCAGGAGGAGCG
CAGGAGGAGCTGCTGCTGTATGTGCTTGGGGTTAGATACAGATGTAGAGC
ATGTGCTCCGTTGTTTTCTCGCTGCTCTTTCCAAGACCACAGCCAGTCTA
CAATATCGAGGCCAGGGCACTGCATGTTGTCTGTGTGGGCATCGGGAGAG
AAAGCGGAGTTATTTGGCTTGCTTCTACTGGCGTAAGCGAGAGCACGCGA
GCCGAATTGTGTACAGCGTATTGTGAGTACGTACTCGTACTTGCAGCTTC
TGCGTTCCTCCTTCTCCTTCTACAGCAGAAAAAAAAACATGATTACAGGT
GCAGCAGTACGAGAAACTGAAATTTCAAGCACCTGGACCCACATTTCGAA
GTTGTGCGATGAGGGCCGCCCCGAAGGAGGACACGGAAAGTGCTGTCGCT
TTGGCACACTCACTCACGGGAGTACGCCAAGGAGCTCATATCTACCCTAC
CAATTTTTGGCTCGATGGGAACGTTCGGGGCTACATAGAGAGCAGATAGA
CGAAATGTCCTCAGGAAAATTAACGGCGGCAGACGTGGTTCCAGTGTCTT
TGTTGTGGGGAGCTTTGGCAATGTCAGTTTTTTTTTTAGCAGTGCAAGCA
ACACTGTAGGGGCGCACCGTTAATATAAATACTATCAATAGTATACTGTT
ATCCCCTATCCTCTACCCCAGCAACTTATCATATGATTAGTGTCATATTT
TACCATAATTCCCTATCCCCTACCCCAGCAGCCTACCAAGTATTATACTA
ATAATACAAAGTATCATGTTGATCATCTCGGACTGTCATGGTTATTATCA
TGGCCATGCCTGAATGTAATTATAGCAACAACAACGGTATACTATTCGTA
ATTATAAGCATCAACTTCATCAAACACTCGAGGACGTCGGTTCCGAATCG
GTGTACTGTTTGCTGTAAACTACCGATACCTCTGCGAACGATCACTATAA
ACTAATATATTTGGAAAATACACATGACAAACTGCTGGCAGTGCTGTAAC
GCCATCCCGGCTACCGGCTACAATACCGGAAAAGTTGCTTGCGTTCCAAG
CACCCTGTTATTAATAGGCCGATCGATCTAATGTATCTATTACCCTTGTC
AGTAGAAGCTGTGTTGATTATTGTTATTGTGACCAATTTGTGATTTTTTA
TTATGGCGTATTTATGCCTCCTCTCCGCCACCTCACGCTGTTGTCAAATC
GTTTTCGTTCGTCCAGGGCAAGCGGATGTCTGCCTCGAAGAAGTGCAACC
ACAACATCAACCAGCCTCTGCAGTCCAGCCGTAATAACTGATGCCTTACC
TTGTCACACACCTGATGGTTTTCAGGCGGTTGGAGGGAGGTTCTTGCGGA
ACTTAATACACCTAAAACGTCGTGTAGTGCTGCCTAGGCAGTGCGTGCAC
AGAGCAGTGAGACCTAGCTCCCTCTCTCTATAGTATCGTCCTGCTGCTAT
GGGTAGCTGCATGCGTACAATGTATCAGGCCTAGCTGCAGTGGTGGAGTG
CGTGCCTCCGGTGCTCAATAGATGAACAGAAAAGCAGTGCTGTTATGATG
GCTTGATTTGGTCGCCTTGAGGCAGGCAGGTTGCTATGAATACGGCACAC
CACCAGTAGAAGGAAGACCGGGAGGAATCAAACTTGCAGTGCCTAGGTAG
GTATATTACGTACGTATAGTATTATACGTATGTAGCCCCCTGCTATCAAC
AAAAAAGTGAAAAAAGCCTCCTTGAAAGCCTCCTTCAATAGTAAAGAATA
CGAAGCCTCTCTCCTTTTTTTTTTTTTTCGGGAGAGAGGCGGAATACAAG
GTCAAAAAACGTTCTAAACTGTAACATTTAGACCCAGCGAAGGGGAAGTG
GACGCCCAACGAACGTATTTTAATAGTAGAACAATAAGAACAAAAGGAGA
CATTTGAGATATTGGAAAAAAACGGACGGGAAATAAATGCTGTGTAAATG
CCATTTAAATACATGGGGTGGGAGGGCAGAGAAATAAAACAAGGGCAAGA
ATAAGTCATCCGCAGCGTGGG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig7872:392..7162- >mRNA_M-pyrifera_M_contig7872.18499.1 ID=mRNA_M-pyrifera_M_contig7872.18499.1|Name=mRNA_M-pyrifera_M_contig7872.18499.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig7872:392..7162- (Macrocystis pyrifera P11B4 male) ATGTTTTCTCTGAACGTTAACGCGCCTATTTTCACTCCGTCGTATGGCCA GCCCATCTTCAACGACGGTCATTTGAGTGCTGTGCGGATCCTGGATTCCG ACGAATATCGCTCCGAATTTCTGCACGATTTCAATCGCGAAGAGGTCGCC GACGAAGACCTATGTTTTCTCTGAACGTTAACGCGCCTATTTTCACTCCG TCGTATGGCCAGCCCATCTTCAACGACGGTCATTTGAGTGCTGTGCGGAT CCTGGATTCCGACGAATATCGCTCCGAATTTCTGCACGATTTCAATCGCG AAGAGGTCGCCGACGAAGACCTGTTCAACCCTGCGATCTACCCTGTCTCC GCAGAAGGTTCAACCCTGCGATCTACCCTGTCTCCGCAGAAGACCACGAA GAGCTTGCAGCAGTAGAAGCTTTCAACAGGGAGATGGCCGAGCTTGAAGA CCTTGAACACCAAGAGGAGCTGAGGTCGTTGCTTCAAGACAGGATTAGCG ACCACGAAGAGCTTGCAGCAGTAGAAGCTTTCAACAGGGAGATGGCCGAG CTTGAAGACCTTGAACACCAAGAGGAGCTGAGGTCGTTGCTTCAAGACAG GATTAGCGCCCTCCAGCACGGAGCATTGAGTCAGAGGCCAGCGAAGATCG CGTCCTTAGAAGGCGGCGTCTTCTCCGCGGGGCACTCAAGAGGCGCACCA TCCGTGGGATACAAGCCCTCCAGCACGGAGCATTGAGTCAGAGGCCAGCG AAGATCGCGTCCTTAGAAGGCGGCGTCTTCTCCGCGGGGCACTCAAGAGG CGCACCATCCGTGGGATACAAGGGCAAGCGGATGTCTGCCTCGAAGAAGT GCAACCACAACATCAACCAGCCTCTGCAGTCCAGCCGTAATAACTGAGGC AAGCGGATGTCTGCCTCGAAGAAGTGCAACCACAACATCAACCAGCCTCT GCAGTCCAGCCGTAATAACTGA back to top
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