mRNA_M-pyrifera_M_contig78699.18493.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78699.18493.1
Unique NamemRNA_M-pyrifera_M_contig78699.18493.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: G5A8N2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A8N2_PHYSP)

HSP 1 Score: 58.5 bits (140), Expect = 2.380e-8
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 FLGALPNYDAVPCSDAPGTCCFGTGLCSAIGHDGCCPAHKRNPFGE---AVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDPCGEFDGTPGSIREKWD-ISHPGEKSSTTRRA 336
            F+  +PN D V            +G+ +A+GH        RN FGE   A+G+A       WTL+L + D DGDG+++G+E+GDPC E+D    +     D +S+PG++SST+ ++
Sbjct:   26 FVAKVPNGDNV------------SGV-AAVGHVNVNGGGPRNAFGEDFDAMGQA-------WTLELCEADSDGDGQTNGEELGDPCCEWDQEMANTPLWTDRVSNPGDESSTSDKS 121          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: H3GT11_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GT11_PHYRM)

HSP 1 Score: 59.7 bits (143), Expect = 3.190e-8
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 FLGALPNYDAVPCSDAPGTCCFGTGLCSAIGH-DGCCPAHKRNPFGEAVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDPCGEFDGTPGSIREKWD-ISHPGEKSSTT 327
            F+  LPN   VP  D P           AIGH DG   +   N FG+A  EA  G++  WT++L   D DGDG+++G E+GDPC E+D     + +  D +SHP + S T+
Sbjct:   31 FVAMLPNGGNVP--DTP-----------AIGHPDGTGDSAATNAFGDAFSEA--GNK--WTVELCMADTDGDGQTNGQELGDPCCEWDMDANPVVQWTDGVSHPDDASKTS 124          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: A0A0B6ZUC5_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZUC5_9EUPU)

HSP 1 Score: 57.8 bits (138), Expect = 4.160e-8
Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = 1
Query:    1 FLGALPNYDAV--PCSDAPGTCCFGTGLCSAIGHDGCCPAHKRNPFGE---AVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDP 246
            F+  +PN D V  PCS  PGT  FG      +GH     +  RNPFGE   A G A       WT DL + D DGDG+++G E+GDP
Sbjct:   20 FINLIPNGDKVTNPCS--PGTVWFG------VGHYNSSGSGPRNPFGEDFAAAGHA-------WTQDLCQKDSDGDGKTNGQELGDP 91          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: A0A6A3Y1C7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Y1C7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.860e-8
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 FLGALPNYDAVPCSDAPGTCCFGTGLCSAIGHDGCCPAHKRNPFG---EAVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDPCGEFDGTPGSIREKWD--ISHPGEKSSTTRRA 336
            F+  LPN D V            +G+  AIGH        RN FG   +A+G+A       WT+ L + D DGDG+++G+E+GDPC E+D    S   +W   +S+PG+ SST+ ++
Sbjct:   66 FVAKLPNGDNV------------SGV-EAIGHVNVNGGGPRNAFGVDFDAMGQA-------WTMKLCEADSDGDGQTNGEELGDPCCEWDDETAST-PRWTEGVSNPGDDSSTSDKS 161          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: A0A6A3JJK4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3JJK4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.570e-8
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 FLGALPNYDAVPCSDAPGTCCFGTGLCSAIGHDGCCPAHKRNPFG---EAVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDPCGEFDGTPGSIREKWD--ISHPGEKSSTTRRA 336
            F+  LPN D V            +G+  AIGH        RN FG   +A+G+A       WT+ L + D DGDG+++G+E+GDPC E+D    S   +W   +S+PG+ SST+ ++
Sbjct:   87 FVAKLPNGDNV------------SGV-EAIGHVNVNGGGPRNAFGVDFDAMGQA-------WTMKLCEADSDGDGQTNGEELGDPCCEWDDETAST-PRWTEGVSNPGDDSSTSDKS 182          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: A0A7S1P551_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P551_9ALVE)

HSP 1 Score: 59.3 bits (142), Expect = 8.660e-8
Identity = 40/107 (37.38%), Postives = 50/107 (46.73%), Query Frame = 1
Query:   79 CSAIGHDGCCPAHKRNPFGEAVGEARLGDEVV------WTLDLVKGDPDGDGRSSGDEMGDPCGEFDGT----PGSIREKWD-ISHPGEKSSTTRRASCSLVHPSDP 366
            C  I H  C      N FG  V     GD         WT  L + D DGD +++GDE+GDPC  F       P  IR+  D ISHP E+  TT + SC+   P+ P
Sbjct:   39 CRGITHPSCGSGPNFNDFGNDVVSLSCGDVEPLSCVPSWTTALCEKDTDGDLKTNGDELGDPCCVFQSNGGRNPAYIRDATDDISHPSERDDTTPKPSCTFDDPAVP 145          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: A0A0G4H3T9_VITBC (FAD-binding FR-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3T9_VITBC)

HSP 1 Score: 59.3 bits (142), Expect = 1.080e-7
Identity = 40/107 (37.38%), Postives = 50/107 (46.73%), Query Frame = 1
Query:   79 CSAIGHDGCCPAHKRNPFGEAVGEARLGDEVV------WTLDLVKGDPDGDGRSSGDEMGDPCGEFDGT----PGSIREKWD-ISHPGEKSSTTRRASCSLVHPSDP 366
            C  I H  C      N FG  V     GD         WT  L + D DGD +++GDE+GDPC  F       P  IR+  D ISHP E+  TT + SC+   P+ P
Sbjct:   41 CRGITHPSCGSGPNFNDFGNDVVSLSCGDVEPLSCVPSWTTALCEKDTDGDLKTNGDELGDPCCVFQSNGGRNPAYIRDATDDISHPSERDDTTPKPSCTFDDPAVP 147          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: A0A7J7JLK9_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JLK9_BUGNE)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-7
Identity = 41/108 (37.96%), Postives = 52/108 (48.15%), Query Frame = 1
Query:    1 FLGALPNYDAVP--CSDAPGTCCFGTGLCSAIGHDGCCPAHKRNPFGEAVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDP-C--GEFDGTPGSIREKWDISHPG 309
            F   +PN D VP  C D          L   +GH        RN FG+A G         WT DL + D DGDG+++G+E+GDP C   E D  PG +    D+SHPG
Sbjct:   24 FQSKIPNGDKVPSPCDD---------NLWGGVGHLVPGGGGVRNSFGKAFGNG-----TSWTKDLCEADSDGDGKTNGEELGDPDCTWSEGDPAPGDVA---DLSHPG 114          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: G4Z4S4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4S4_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-7
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    1 FLGALPNYDAVPCSDAPGTCCFGTGLCSAIGH-DGCCPAHKRNPFGEAVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDPCGEFDGTPGSIREKWD-ISHPGEKSSTT 327
            F+  LPN   VP  D P           AIGH DG   +   N FG+A  EA  G++  WT +L   D DGDG+++G E+GDPC E+D     + +  D +SHP + + T+
Sbjct:   31 FVAMLPNGGNVP--DTP-----------AIGHPDGTGDSAATNAFGDAFAEA--GNK--WTTELCMADTDGDGQTNGQELGDPCCEWDMDTNPVVQWTDGVSHPDDATKTS 124          
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Match: A0A6A3T6U8_9STRA (ABC transporter domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3T6U8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.010e-7
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 FLGALPNYDAVPCSDAPGTCCFGTGLCSAIGHDGCCPAHKRNPFG---EAVGEARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDPCGEFDGTPGSIREKWD--ISHPGEKSSTTRRA 336
            F+  LPN D V            +G+  AIGH        RN FG   +A+G+A       WT+ L + D DGDG+++G+E+GDPC E+D    S   +W   +S+PG+ SST+ ++
Sbjct:  711 FVAKLPNGDNV------------SGV-EAIGHVNVNGGGPRNAFGVDFDAMGQA-------WTMKLCEADSDGDGQTNGEELGDPCCEWDDETAST-PRWTEGVSNPGDDSSTSDKS 806          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78699.18493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G5A8N2_PHYSP2.380e-835.34Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
H3GT11_PHYRM3.190e-838.74Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0B6ZUC5_9EUPU4.160e-843.68Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
A0A6A3Y1C7_9STRA4.860e-835.90Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A3JJK4_9STRA6.570e-835.90Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A7S1P551_9ALVE8.660e-837.38Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4H3T9_VITBC1.080e-737.38FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A7J7JLK9_BUGNE1.480e-737.96Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
G4Z4S4_PHYSP1.630e-737.84Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3T6U8_9STRA2.010e-735.90ABC transporter domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78699contigM-pyrifera_M_contig78699:591..974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3e-07
Seed eggNOG ortholog67593.Physo131737
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZB7@1,2S9GS@2759,3QHHX@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.808962-CDS-M-pyrifera_M_contig78699:590..9741622816689.808962-CDS-M-pyrifera_M_contig78699:590..974Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78699 591..974 -
1692278121.4475029-CDS-M-pyrifera_M_contig78699:590..9741692278121.4475029-CDS-M-pyrifera_M_contig78699:590..974Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78699 591..974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78699.18493.1prot_M-pyrifera_M_contig78699.18493.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78699 591..974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78699.18493.1

>prot_M-pyrifera_M_contig78699.18493.1 ID=prot_M-pyrifera_M_contig78699.18493.1|Name=mRNA_M-pyrifera_M_contig78699.18493.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
FLGALPNYDAVPCSDAPGTCCFGTGLCSAIGHDGCCPAHKRNPFGEAVGE
ARLGDEVVWTLDLVKGDPDGDGRSSGDEMGDPCGEFDGTPGSIREKWDIS
HPGEKSSTTRRASCSLVHPSDPSSVEAA
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mRNA from alignment at M-pyrifera_M_contig78699:591..974-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78699.18493.1 ID=mRNA_M-pyrifera_M_contig78699.18493.1|Name=mRNA_M-pyrifera_M_contig78699.18493.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig78699:591..974- (Macrocystis pyrifera P11B4 male)
TTTTTGGGAGCGTTACCAAATTATGACGCTGTGCCGTGTTCAGATGCACC GGGCACGTGCTGCTTTGGCACAGGGTTATGCTCTGCAATTGGGCATGATG GGTGTTGTCCTGCACATAAGCGAAATCCTTTTGGGGAGGCTGTAGGGGAA GCTAGATTGGGGGATGAGGTTGTTTGGACATTGGACCTTGTGAAAGGAGA CCCAGATGGAGATGGACGGAGTAGTGGAGATGAAATGGGTGATCCTTGTG GGGAATTTGATGGCACACCAGGTTCTATTCGTGAGAAATGGGACATTTCT CACCCTGGAGAAAAAAGCTCAACTACGAGGAGAGCTAGTTGCTCTCTTGT CCACCCAAGTGATCCAAGTAGTGTGGAGGCTGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78699:591..974-

>mRNA_M-pyrifera_M_contig78699.18493.1 ID=mRNA_M-pyrifera_M_contig78699.18493.1|Name=mRNA_M-pyrifera_M_contig78699.18493.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig78699:591..974- (Macrocystis pyrifera P11B4 male)
TTTTTGGGAGCGTTACCAAATTATGACGCTGTGCCGTGTTCAGATGCACC
GGGCACGTGCTGCTTTGGCACAGGGTTATGCTCTGCAATTGGGCATGATG
GGTGTTGTCCTGCACATAAGCGAAATCCTTTTGGGGAGGCTGTAGGGGAA
GCTAGATTGGGGGATGAGGTTGTTTGGACATTGGACCTTGTGAAAGGAGA
CCCAGATGGAGATGGACGGAGTAGTGGAGATGAAATGGGTGATCCTTGTG
GGGAATTTGATGGCACACCAGGTTCTATTCGTGAGAAATGGGACATTTCT
CACCCTGGAGAAAAAAGCTCAACTACGAGGAGAGCTAGTTGCTCTCTTGT
CCACCCAAGTGATCCAAGTAGTGTGGAGGCTGCTTTTTTGGGAGCGTTAC
CAAATTATGACGCTGTGCCGTGTTCAGATGCACCGGGCACGTGCTGCTTT
GGCACAGGGTTATGCTCTGCAATTGGGCATGATGGGTGTTGTCCTGCACA
TAAGCGAAATCCTTTTGGGGAGGCTGTAGGGGAAGCTAGATTGGGGGATG
AGGTTGTTTGGACATTGGACCTTGTGAAAGGAGACCCAGATGGAGATGGA
CGGAGTAGTGGAGATGAAATGGGTGATCCTTGTGGGGAATTTGATGGCAC
ACCAGGTTCTATTCGTGAGAAATGGGACATTTCTCACCCTGGAGAAAAAA
GCTCAACTACGAGGAGAGCTAGTTGCTCTCTTGTCCACCCAAGTGATCCA
AGTAGTGTGGAGGCTGCT
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