mRNA_M-pyrifera_M_contig78648.18482.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78648.18482.1
Unique NamemRNA_M-pyrifera_M_contig78648.18482.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: UPI001556F7B2 (metallophosphatase domain-containing protein n=1 Tax=Sphingobacterium shayense TaxID=626343 RepID=UPI001556F7B2)

HSP 1 Score: 72.4 bits (176), Expect = 9.050e-14
Identity = 35/70 (50.00%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   37 RFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            R + LSDTHGKH  + +PDGDVL+H GD   R         G       F  W AS  HP KIFIPGNHD
Sbjct:    2 RIITLSDTHGKHQGLSIPDGDVLIHAGDITSR---------GYKNEVVDFFEWFASQNHPHKIFIPGNHD 62          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: A0A7C6E0U9_9BACT (Metallophosphoesterase n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C6E0U9_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 3.870e-13
Identity = 32/72 (44.44%), Postives = 39/72 (54.17%), Query Frame = 1
Query:   31 MERFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            M R V +SDTH  H  + +PDGD+L+H+GDA            G     A F  W A  PHP KIF+ GNHD
Sbjct:    1 MPRIVCISDTHNFHRLLRIPDGDILIHSGDATLN---------GTEEEFADFADWFAEQPHPYKIFVAGNHD 63          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: A0A1R4JZC9_9SPHI (Adult brain protein 239-like protein n=1 Tax=Sphingobacterium sp. JB170 TaxID=1434842 RepID=A0A1R4JZC9_9SPHI)

HSP 1 Score: 68.9 bits (167), Expect = 1.910e-12
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   37 RFVFLSDTHGKHTFVDVPDGDVLVHTGD--AMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            + + LSDTHGKH  +++PDGD+++H GD  +M R  E             +F  W AS  HP KIFIPGNHD
Sbjct:    2 QIITLSDTHGKHGKIEIPDGDIIIHAGDVTSMGRKHE-----------VVAFFDWFASLKHPHKIFIPGNHD 62          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: A0A1V9ZK88_9STRA (Calcineurin-like phosphoesterase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZK88_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.370e-12
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   16 PKKEGMERFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            P++    RFV +++THGKHTFVDVP GDVLV  G    R         G  + A +F  WL   PHP K+ +PG H+
Sbjct:   85 PQQPDALRFVCVANTHGKHTFVDVPAGDVLVVAGGCTKR---------GRHSEAQAFNAWLVGLPHPTKLVVPGEHE 152          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: A0A6C2YT10_9BACT (Metallophos domain-containing protein n=1 Tax=Tuwongella immobilis TaxID=692036 RepID=A0A6C2YT10_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 4.490e-12
Identity = 38/74 (51.35%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   31 MERFVFLSDTHGKHTFVDVPDGDVLVHTGDAMC--RNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            M R V LSDTHGKH  + VP+GDVL+H GD     R GE             +F  WLAS PHP KI I GNHD
Sbjct:    1 MPRVVLLSDTHGKHDQLIVPEGDVLLHAGDLSSYGRMGEIH-----------AFDHWLASLPHPHKIIIAGNHD 63          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: UPI001BCEADA4 (metallophosphatase domain-containing protein n=1 Tax=Marinobacter lipolyticus TaxID=209639 RepID=UPI001BCEADA4)

HSP 1 Score: 67.8 bits (164), Expect = 5.350e-12
Identity = 34/70 (48.57%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   37 RFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            R V +SDTHG H  VDVP+GD+L+H+GD       C G   G  A       W A  PHP KI I GNHD
Sbjct:    2 RLVCISDTHGMHRQVDVPEGDILIHSGD-------CLG--VGTLAELEDLDHWFAEQPHPHKILIAGNHD 62          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: A0A349DHM8_9BACT (Metallophosphoesterase n=1 Tax=Microscillaceae bacterium TaxID=2053581 RepID=A0A349DHM8_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 5.430e-12
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   37 RFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            + V +SDTHGKH  V VP+GD+L+H GD   R         G P     F  WL + PHP KI I GNHD
Sbjct:    2 KVVCISDTHGKHRDVKVPEGDLLIHAGDISRR---------GYPKEIRKFNDWLGTLPHPHKIMIAGNHD 62          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: L8GEC8_ACACA (Ser/Thr phosphatase family superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEC8_ACACA)

HSP 1 Score: 68.6 bits (166), Expect = 8.420e-12
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   10 VPPKKEGMERFVFLSDTHGKHTFVDVPDGDVLVHTGD--AMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            +PPK EG  RFV +SDTH +H  +++P GDVL+H+GD    C+  E              F  WL   P+  K+ + GNHD
Sbjct:   89 IPPKPEGATRFVCISDTHNRHRMLELPAGDVLLHSGDFSLSCKEKE-----------LVDFTEWLHEQPYTHKVIVAGNHD 158          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: A1ZEC9_9BACT (239AB n=1 Tax=Microscilla marina ATCC 23134 TaxID=313606 RepID=A1ZEC9_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   37 RFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            + V +SDTHGKH+ + VP+GD+L+H GD   R         G P     F  WLA+ PH  K+ I GNHD
Sbjct:    2 KIVCISDTHGKHSQIAVPEGDLLIHAGDLSAR---------GRPKEIRRFNNWLATLPHRHKVVIAGNHD 62          
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Match: A0A7S4JPG1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JPG1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.080e-11
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 VVVVPPKKEGMERFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAASFGTWLASHPHPLKIFIPGNHD 246
            +  +PP+     R V LSDTHGKH+   +P+GD+L+H GDA+ R G       G   +   F  WL S  H  K F+ GNHD
Sbjct:  139 IASLPPRSTECTRLVALSDTHGKHSIFPIPNGDILLHAGDALLRYGFWGDYGAGERGMH-DFLLWLNSQSHKHKAFVGGNHD 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78648.18482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001556F7B29.050e-1450.00metallophosphatase domain-containing protein n=1 T... [more]
A0A7C6E0U9_9BACT3.870e-1344.44Metallophosphoesterase n=1 Tax=Blastocatellia bact... [more]
A0A1R4JZC9_9SPHI1.910e-1245.83Adult brain protein 239-like protein n=1 Tax=Sphin... [more]
A0A1V9ZK88_9STRA2.370e-1244.16Calcineurin-like phosphoesterase n=1 Tax=Achlya hy... [more]
A0A6C2YT10_9BACT4.490e-1251.35Metallophos domain-containing protein n=1 Tax=Tuwo... [more]
UPI001BCEADA45.350e-1248.57metallophosphatase domain-containing protein n=1 T... [more]
A0A349DHM8_9BACT5.430e-1247.14Metallophosphoesterase n=1 Tax=Microscillaceae bac... [more]
L8GEC8_ACACA8.420e-1239.51Ser/Thr phosphatase family superfamily protein n=1... [more]
A1ZEC9_9BACT1.030e-1144.29239AB n=1 Tax=Microscilla marina ATCC 23134 TaxID=... [more]
A0A7S4JPG1_9STRA1.080e-1141.46Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78648contigM-pyrifera_M_contig78648:49..294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog1121382.JQKG01000063_gene3044
KEGG koko:K07096
Hectar predicted targeting categoryother localisation
EggNOG free text desc.metallophosphoesterase
EggNOG OGsCOG2129@1,COG2129@2
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size246
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.26428-CDS-M-pyrifera_M_contig78648:48..2641622816689.26428-CDS-M-pyrifera_M_contig78648:48..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78648 49..264 -
1692278121.141359-CDS-M-pyrifera_M_contig78648:48..2641692278121.141359-CDS-M-pyrifera_M_contig78648:48..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78648 49..264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.2753756-UTR-M-pyrifera_M_contig78648:264..2941622816689.2753756-UTR-M-pyrifera_M_contig78648:264..294Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78648 265..294 -
1692278121.1532776-UTR-M-pyrifera_M_contig78648:264..2941692278121.1532776-UTR-M-pyrifera_M_contig78648:264..294Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78648 265..294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78648.18482.1prot_M-pyrifera_M_contig78648.18482.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78648 49..264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78648.18482.1

>prot_M-pyrifera_M_contig78648.18482.1 ID=prot_M-pyrifera_M_contig78648.18482.1|Name=mRNA_M-pyrifera_M_contig78648.18482.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MERFVFLSDTHGKHTFVDVPDGDVLVHTGDAMCRNGECFGCCTGAPALAA
SFGTWLASHPHPLKIFIPGNHD
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mRNA from alignment at M-pyrifera_M_contig78648:49..294-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78648.18482.1 ID=mRNA_M-pyrifera_M_contig78648.18482.1|Name=mRNA_M-pyrifera_M_contig78648.18482.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig78648:49..294- (Macrocystis pyrifera P11B4 male)
GTGGTGGTCGTCCCTCCAAAAAAGGAGGGGATGGAGCGATTTGTGTTTCT TTCTGATACTCATGGGAAACATACATTTGTTGATGTACCTGATGGAGATG TCTTAGTTCATACGGGTGATGCTATGTGTCGAAATGGGGAATGTTTCGGA TGTTGTACTGGGGCTCCAGCACTTGCTGCATCATTTGGAACATGGTTGGC AAGTCATCCACATCCACTGAAAATATTCATCCCTGGAAACCATGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78648:49..294-

>mRNA_M-pyrifera_M_contig78648.18482.1 ID=mRNA_M-pyrifera_M_contig78648.18482.1|Name=mRNA_M-pyrifera_M_contig78648.18482.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig78648:49..294- (Macrocystis pyrifera P11B4 male)
ATGGAGCGATTTGTGTTTCTTTCTGATACTCATGGGAAACATACATTTGT
TGATGTACCTGATGGAGATGTCTTAGTTCATACGGGTGATGCTATGTGTC
GAAATGGGGAATGTTTCGGATGTTGTACTGGGGCTCCAGCACTTGCTGCA
TCATTTGGAACATGGTTGGCAAGTCATCCACATCCACTGAAAATATTCAT
CCCTGGAAACCATGATATGGAGCGATTTGTGTTTCTTTCTGATACTCATG
GGAAACATACATTTGTTGATGTACCTGATGGAGATGTCTTAGTTCATACG
GGTGATGCTATGTGTCGAAATGGGGAATGTTTCGGATGTTGTACTGGGGC
TCCAGCACTTGCTGCATCATTTGGAACATGGTTGGCAAGTCATCCACATC
CACTGAAAATATTCATCCCTGGAAACCATGAT
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