mRNA_M-pyrifera_M_contig7862.18476.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7862.18476.1
Unique NamemRNA_M-pyrifera_M_contig7862.18476.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 422 bits (1085), Expect = 2.920e-136
Identity = 273/522 (52.30%), Postives = 334/522 (63.98%), Query Frame = 1 
Query:    1 KLLYSHMRCITKEKTALFIPNAIAIITAKKEYIFRSFWDREEAFRTLKACHEDSLALSASLGEGALPREGSPLSLK-----SRERESEQRRSLG-------AKRSSSGSRGSDKDLKDADDKGFKSRPPTKRRL--PWSGKNERRRSSLVATGAPQTKTKLQRKPLLVPF--------HARNMSGASSNTSSSLSVG-----------GVADTVEQLGDLNLSNL-EVQLPLRQDLSAEEEAAGSARSGRREARRGSVANGTAG---GRDSGGGSRVVSDE--SEVDVLGVEGSPVTAVSLGSTTGGGSPPSKAEEFRLALSSLGDGWL-------AGSAKHSDIPRHHGATVKISAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVAGGALGMTREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKSAIQIRQPG 1428
            K+ + HMRCITKEKTALFIPNAIAIIT+KKEYIFRSFWDRE+AF+TLK C +D+   S +L +       S L L+     S  RE+E             A+R+SS SR  D++  D   K  +     +R+L  P +G+  R  SSL                             +  ++SG SSN +S+ S              VA  +E L       + E Q    + +  +EEA G A +        +  NG AG   G D G     VSDE  SEVDVLGVEGSPVTAVSLG+TTGGG  PSK E+F++AL++LG+GWL       AG     + P+  GA V++S ++ CQLQ FF+LFISNDAEKGIPAFH+++GDSD++ATPWKVAGGALGMTREIRFVHPISAPIGP+STRAVKLQRCRLY EHGLI+ETSTHLEDI MSDYFQIDDRCVVQPG+DG   V V+++IKFFKSTMFRKTIE KSL ETR+VWESFI M K A++ R+P 
Sbjct:  111 KIPFCHMRCITKEKTALFIPNAIAIITSKKEYIFRSFWDREDAFKTLKQCQQDA---SNTLTQPQQHAAESSLILERELDLSSSRENEDPXXXXXXXXRHHARRTSSSSRVGDEE--DDHSKDLEPGQGARRKLTRPENGEQGRSSSSLTVEXXXXXXXXXXXXXXXXXXXXXXXGEDNCLSVSGPSSNDASNSSFDLPAAAAVDTPHAVAVALEPLKTSPNGGVGEQQQSAAEGVGGKEEAGGEAFA--------AEGNGRAGKGEGEDEGDAGLTVSDEYESEVDVLGVEGSPVTAVSLGATTGGGKTPSKGEDFKVALTALGEGWLLGDSGNAAGEGNQGERPKGKGAAVRVSTEIPCQLQEFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQRCRLYDEHGLILETSTHLEDILMSDYFQIDDRCVVQPGQDGAVRVDVEIEIKFFKSTMFRKTIETKSLSETRQVWESFIGMTKDALRKRKPA 619
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 2.440e-128
Identity = 255/499 (51.10%), Postives = 302/499 (60.52%), Query Frame = 1 
Query:    1 KLLYSHMRCITKEKTALFIPNAIAIITAKKEYIFRSFWDREEAFRTLKACHEDSLALSASLGE-----------GALPREGSPLSLKSRERESEQRRSLGAKRSSSGSRGSDKDLKDADDKGFKSRPP---TKRRLPWSGKNERRRSSLVATGAPQTKTKLQRKPLLVPFHARNMSGASSNTSSSLSVGGVADTVEQLGDLNLSNLEVQLPLRQDLSAEEEAAGSARSGRREARRGSVANGTAGGRDSGGGSRVVSDE--SEVDVLGVEGSPVTAVSLGSTTGGGSPPSKAEEFRLALSSLGDGWL-------AGSAKHSDIPRHHGATVKISAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVAGGALGMTREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKSAIQIRQPG 1428
            K+ + HMRCITKEKTALFIPNAIAIIT+KKEYIFRSFWDRE+AF+TLK C +D+   S++L +                E                                  + D DD   K   P    +R+L WS   ER RSS                                   SSL+VG                 E Q    + +  +EEA G A      A  G+           G     VSDE  SEVDVLGVEGSPVTAVSLG+TTGGG  PSK E+F++AL++LG+GWL       AG    ++ P+  GA V++S ++ CQLQ FF+LFISNDAEKGIPAFH+++GDSD++ATPWKVAGGALGMTREIRFVHPISAPIGP+STRAVKLQRCRLY EHGLI+ETSTHLEDI MSDYFQIDDRCVVQPG+DG   V V+++IKFFKSTMFRKTIE KSL ETR+VWESFI M K AI+ R+P 
Sbjct:   72 KIPFCHMRCITKEKTALFIPNAIAIITSKKEYIFRSFWDREDAFKTLKQCQQDA---SSTLTQQXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGDEDDDQGKDLEPGQGARRKLTWSENGERGRSS-----------------------------------SSLTVG-----------------EQQQSAAEGVGGKEEADGGAF-----AVEGNXXXXXXXXXXXGDAGLTVSDEYESEVDVLGVEGSPVTAVSLGATTGGGKMPSKGEDFKVALTALGEGWLLGDSGNAAGEGNQAERPKGKGAAVRVSTEIPCQLQDFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQRCRLYDEHGLILETSTHLEDIVMSDYFQIDDRCVVQPGQDGAVRVDVEIEIKFFKSTMFRKTIETKSLSETRQVWESFIGMTKDAIRKRKPA 510
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.800e-30
Identity = 137/486 (28.19%), Postives = 194/486 (39.92%), Query Frame = 1 
Query:    1 KLLYSHMRCITKEKTALFIPNAIAIITAKKEYIFRSFWDREEAFRTLKACHEDSLALSASLGEGALPREGSP--LSLKSRERESEQRRSLGAKRSSSGSRGSDKDLKDADDKGFKSRPPTKRRLPWSGKNERRRSSLVATGAPQTKTKLQRKPLLVPFHARNMSGASSNTSSSLSVGGVADTVEQLGDLNLSNLEVQLPLRQDLSAEEEAAGSARSGRREARRGSVANGTAGGRDSGGGSRVVSDESEVDVLGVEGSPVTAVSLGSTTGGGSPPSKAEEFRLALSSLGDGWLAGSAKHSDIPRHHGATVKISAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVAGGA----LGMTREIRFVHPI-SAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGR--DGDSGVCVDV--DIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKSAIQIRQP 1425
            K+ YSH+ C+TKE TA+FIPNAIA+ITAK+EY FRSFWDR+EAF  LK CHE S             R G P  +S  SR R+          R++S    +  D +DA        P    R+    +   RR+++  T +P     L                                TV+  G                                       ++G   GR+         DE E D                         K    RL L    D   A  A        + A   I+      L  FF+ F+S +A  G+P FH+  GD++++   W              R  RF  PI  +PIGP STR  K Q C+++   G+++ET THLEDIP  D F ++DR VV P +  DG +G  ++V  +IK+ K T  + TIE+K+  +  E +        + ++  QP
Sbjct:   80 KIPYSHIACVTKEYTAVFIPNAIAVITAKREYFFRSFWDRDEAFHLLKECHEQS-------------RGGGPSRISTASRPRD----------RAASAGHVATVDRRDARADRLSKSPA---RVLSISRETGRRNTMALTPSPVPPESL--------------------------------TVQSSGS--------------------------------------SDGALTGRE---------DEEEED-------------------------KETSQRLQL----DPETAFEATKEGRKYKYSA---ITVDFPVDLDQFFQRFLSKEAGMGLPKFHQVKGDTEVKVDDWSSNTSTDPDIRKHLRTFRFRTPIVGSPIGPPSTRGTKTQCCQVFVRKGIVVETVTHLEDIPFGDCFNVEDRWVVTPTQLADGTAGTRLEVVFEIKWMKGTWLKGTIESKTKSDMTEFFTLCTEAMATHLKTEQP 428
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: A0A7S4MEH9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MEH9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.190e-25
Identity = 65/200 (32.50%), Postives = 114/200 (57.00%), Query Frame = 1 
Query:  823 AEEF-RLALSSLGDGWLAGSAKHSDIPRHHGATVKISAKLSCQLQTFFELFISNDAEKGIPAF-HETLGDSDIQATPWKVAG-GALGMTREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKSAIQ 1413
            AE++ ++  + +   W+   A+ S  P      +K ++ LSC L  F+ LF+SNDA   I  +  + LGD+ ++ + W ++   +  +TR +R+VHP++AP+ P +  A K Q  R +G+ G+++ET T + D+PM+D F IDDR +V+P  +G   +    +++F K TMFRK I   S+ E  +    +    + AI+
Sbjct:  227 AEKYGKMVPADMRGAWI--KARDSGDPTFANVVLKATS-LSCTLDKFYSLFLSNDAVHPIGNYMSDVLGDTRVETSSWSLSEQDSFSLTRTVRYVHPVNAPMAPPAASATKEQCFRRFGDEGMVLETQTVVNDVPMADCFYIDDRMLVEPTPEGGVALTAAFEVRFVKRTMFRKVINGTSVIEVTKGIRKYEAYLRRAIE 423
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: W7TNL4_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNL4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.390e-25
Identity = 58/167 (34.73%), Postives = 97/167 (58.08%), Query Frame = 1 
Query:  949 LQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVAGGALGMTREIRFVHPISA-PIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQP---------GRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKSAIQIR 1419
            +Q FF  FIS+ A  GI  +HE  GD D++ +PW+     +G TR +RFV  +   P+GP +   ++LQR R++G+HG+++ETS+ +E++P  D F ++DR VV+P            G   +    +++F KST+F+K IE++S  +T E    +  M +  +  R
Sbjct:   20 VQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.060e-23
Identity = 116/469 (24.73%), Postives = 172/469 (36.67%), Query Frame = 1 
Query:    1 KLLYSHMRCITKEKTALFIPNAIAIITAKKEYIFRSFWDREEAFRTLKACHEDSLALSASLGEGALPREGSPLSLKSRERESEQRRSLGAKRSSSGSRGSDKDLKDADDKGFKSRPPTKRRLPWSGKNERRRSSLVATGAPQTKTKLQRKPLLVPFHARNMSG-ASSNTSSSLSVGGVADTVEQLGDLNLSNLEVQLPLRQDLSAEEEAAGSARSGRREARRGSVANGTAGGRDSGGGSRVVSDESEVDVLGVEGSPVTAVSLGSTTGGGSPPSKAEEFRLALSSLGDGWLAGSAKHSDIPRHHGATVKISAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVAGGALGMTREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKS 1404
            K+ YSH+ C+TKE TA+FIPNAIA+ITA+KEY+FRSFWDR++ F  L+A HE    +              P S    E E++Q+ S                                       K E  +           +  L ++ LL     + + G A  +     S   VADT E                                                              S     G E   V A  L  T                                     H   + +S      +  FF  F+++     +  FH   GD ++  TPW  + G     RE+RF   ++ P+GP S R  K+QRCR +G HGL++     +EDIP  D F I DR VV P  DG   V  + ++K+ KST+F++ IE+ S  + +  ++++   A++
Sbjct:   99 KIPYSHVTCVTKENTAVFIPNAIAVITARKEYVFRSFWDRDDCFNLLRAYHEMYRTVLE------------PASSHVEEEETQQQES---------------------------------------KEEAEKFETHVETPVARQESLPQQDLL-----KRIEGIAGPDVQERPSTPDVADTPEHA-----------------------------------------------------------RSTAKAFGAE---VHATKLAETL------------------------------------HTCQLPVS------VDEFFAHFLADGCGFPLTKFHVDQGDLEVACTPWASSDGEHD--RELRFRRLLNNPMGPKSARTTKIQRCRAFGRHGLVLHGVLSMEDIPYRDCFAIHDRWVVTPRDDG-VDVAFEFEVKWSKSTIFKRKIESSSRSDLQAYYDAYAAAARA 404
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: A0A4D9D7Z9_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7Z9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.040e-20
Identity = 55/174 (31.61%), Postives = 98/174 (56.32%), Query Frame = 1 
Query:  949 LQTFFELFISNDAEKGIPAFH--------ETLGDSDIQATPWKVAGGALGMTREIRFVHPISA-PIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGRDGDS--------GVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKSAIQIR 1419
            +Q FF  FIS+ A  GI  +H        +  GD +++ +PW+     +G TR +RFV  +   P+GP +   ++LQR R++G+HG+++ETS+ +E++P  D F ++DR VV+P    ++         +    +++F KST+F+K IE++S  +T E    +  M +  +  R
Sbjct:  843 VQEFFRDFISDKAVLGIDKYHGKGVLIWSQWQGDKEVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR 1016
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: A0A7S3NLX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLX8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.130e-20
Identity = 117/488 (23.98%), Postives = 180/488 (36.89%), Query Frame = 1 
Query:    1 KLLYSHMRCITKEKTALFIPNAIAIITAKKEYIFRSFWDREEAFRTLKACHEDSLAL-----SASLGEGALPREGSPLSLKSRERESEQRRSLGAKRSSSGSRGSDKDLKD--------ADDKGFKSRPPTKRRLPWSGKNERRRSSLVATGAPQTKTKLQRKPLLVPFHARNMSGASSNTSSSLSVGGVADTVEQLGDLNLSNLEVQLPLRQDLSAEEEAAGSARSGRREARRGSVANGTAGGRDSGGGSRVVSDESEVDVLGVEGSPVTAVSLGSTTGGGSPPSKAEEFRLALSSLGDGWLAGSAKHSDIPRHHGATVKISAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVA---GGALGMTREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGRDGD---------SGVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFI 1389
            K+ YS++ CITKE TA+FIPNAIA+ITA+KEYIFRSFWDR+E +  LK  H+    +      A + EG     GS   L            + A   S+ S  ++KD+ +        AD  G       KRR+ +S K    +S+                                      ++  V   VE +G L                                                                        +SLGS T                         G+  H             SA     +  FF  F++++A   +  FHE  GD+D+  T W             RE+RF   + +PIGP++TR  K+QRCR +G+ G+I+ T   +EDIP  D F I++R V +P   G          + +  +  + + K+T++++ IE+ S  +    + ++I
Sbjct:  203 KIPYSYITCITKEYTAVFIPNAIAVITARKEYIFRSFWDRDECYDVLKQMHDMYRGVIETGPQAHIEEGHAVGRGSKDLL------------IAALPISNQSDSNNKDVANIKINSDSAADKYGHLVGAKAKRRVDFSDK----KSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTIDDVIRPVESVGSL------------------------------------------------------------------------ISLGSVT-----------------------AIGALAHE----------LASATFEISIHQFFNHFLADNASFSLAKFHEFQGDTDVSVTNWTETYRNDQESEDARELRFKRQLRSPIGPAATRTTKMQRCRRFGQRGIIMNTVMTMEDIPYRDCFSIEERWVAEPCTIGGINTNNQRLGTRIRFEFQVVWTKTTIWKRRIESSSKSDLESYYNAYI 569
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: B5Y3M1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3M1_PHATC)

HSP 1 Score: 101 bits (251), Expect = 4.410e-19
Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 1 
Query:  904 HHGATVKISAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVAGGALGM-TREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVVQPGRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQE 1362
            +    VK     +C L  F++LF++  A   +  F E  GD++++ + WK A  +    TR I + HP++AP+ P    A K QR R + E G+I++T T ++D+PM+D F + DR  V+P       V ++ +I F KSTMF+  I   +  E
Sbjct:  459 YKNVVVKDHVLTNCSLGKFYDLFLAEGAPYSMAKFLEARGDTELKVSDWKSAKDSQKWRTRVINYSHPVNAPLAPPKAGARKEQRFRRFDEFGMIVQTKTFVDDVPMADCFYVTDRIRVEPAGTDAVSVFLEFEITFVKSTMFKSIISKTTASE 612
[Close]
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Match: A0A7S2LHW3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHW3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.660e-18
Identity = 55/162 (33.95%), Postives = 88/162 (54.32%), Query Frame = 1 
Query:  928 SAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWK--VAGGALGMTREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIPMSDYFQIDDRCVV-QPGRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQETREVWESFIVMAKS 1404
            S  L   +  F++  + ++A+  I  F   +G+ ++ +T W+  V        R+I+++HPI+AP+ P +  A K QR   +G  GL +ETST +E++PM+D F + DR  V +   DG   V +   I F K TMFR+ IE  +  E ++ W  F  M KS
Sbjct:  108 SIPLPVSVDDFYKQVLDDNADHSIDKFMRDIGELEVVSTSWQPSVPTPNAPANRDIKYIHPINAPMAPPTAAARKEQRLHKFGNVGLCLETSTFVENVPMADCFVVRDRLWVNENSEDGGCIVSITFQIDFIKGTMFRRIIENTTRGEYQKYWTQFWDMIKS 269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7862.18476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0Q2_9PHAE2.920e-13652.30VASt domain-containing protein (Fragment) n=1 Tax=... [more]
D7FKF6_ECTSI2.440e-12851.10VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2STC3_9STRA2.800e-3028.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4MEH9_9STRA1.190e-2532.50Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
W7TNL4_9STRA3.390e-2534.73VASt domain-containing protein n=1 Tax=Nannochloro... [more]
A0A8J2ST97_9STRA2.060e-2324.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9D7Z9_9STRA2.040e-2031.61VASt domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S3NLX8_9STRA6.130e-2023.98Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B5Y3M1_PHATC4.410e-1933.77Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2LHW3_9STRA1.660e-1833.95Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7862contigM-pyrifera_M_contig7862:5023..11899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.9
Seed ortholog evalue2.1e-109
Seed eggNOG ortholog2880.D7FKF6
Preferred nameVAD1
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
Ec32 ortholog descriptionGRAM domain
Ec32 orthologEc-12_002240.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1434
Cds size1416
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.7711825-UTR-M-pyrifera_M_contig7862:5022..50401622816688.7711825-UTR-M-pyrifera_M_contig7862:5022..5040Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7862 5023..5040 +
1692278120.7810788-UTR-M-pyrifera_M_contig7862:5022..50401692278120.7810788-UTR-M-pyrifera_M_contig7862:5022..5040Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7862 5023..5040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.7827778-CDS-M-pyrifera_M_contig7862:5040..52551622816688.7827778-CDS-M-pyrifera_M_contig7862:5040..5255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 5041..5255 +
1692278120.794797-CDS-M-pyrifera_M_contig7862:5040..52551692278120.794797-CDS-M-pyrifera_M_contig7862:5040..5255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 5041..5255 +
1622816688.7928069-CDS-M-pyrifera_M_contig7862:5867..59651622816688.7928069-CDS-M-pyrifera_M_contig7862:5867..5965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 5868..5965 +
1692278120.8053014-CDS-M-pyrifera_M_contig7862:5867..59651692278120.8053014-CDS-M-pyrifera_M_contig7862:5867..5965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 5868..5965 +
1622816688.8058116-CDS-M-pyrifera_M_contig7862:6926..70631622816688.8058116-CDS-M-pyrifera_M_contig7862:6926..7063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 6927..7063 +
1692278120.8159864-CDS-M-pyrifera_M_contig7862:6926..70631692278120.8159864-CDS-M-pyrifera_M_contig7862:6926..7063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 6927..7063 +
1622816688.8208694-CDS-M-pyrifera_M_contig7862:7545..78301622816688.8208694-CDS-M-pyrifera_M_contig7862:7545..7830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 7546..7830 +
1692278120.8263915-CDS-M-pyrifera_M_contig7862:7545..78301692278120.8263915-CDS-M-pyrifera_M_contig7862:7545..7830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 7546..7830 +
1622816688.8341737-CDS-M-pyrifera_M_contig7862:8264..84651622816688.8341737-CDS-M-pyrifera_M_contig7862:8264..8465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 8265..8465 +
1692278120.8364055-CDS-M-pyrifera_M_contig7862:8264..84651692278120.8364055-CDS-M-pyrifera_M_contig7862:8264..8465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 8265..8465 +
1622816688.845092-CDS-M-pyrifera_M_contig7862:9083..92831622816688.845092-CDS-M-pyrifera_M_contig7862:9083..9283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 9084..9283 +
1692278120.8472552-CDS-M-pyrifera_M_contig7862:9083..92831692278120.8472552-CDS-M-pyrifera_M_contig7862:9083..9283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 9084..9283 +
1622816688.8570433-CDS-M-pyrifera_M_contig7862:10851..109991622816688.8570433-CDS-M-pyrifera_M_contig7862:10851..10999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 10852..10999 +
1692278120.857882-CDS-M-pyrifera_M_contig7862:10851..109991692278120.857882-CDS-M-pyrifera_M_contig7862:10851..10999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 10852..10999 +
1622816688.8676698-CDS-M-pyrifera_M_contig7862:11767..118991622816688.8676698-CDS-M-pyrifera_M_contig7862:11767..11899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 11768..11899 +
1692278120.8688679-CDS-M-pyrifera_M_contig7862:11767..118991692278120.8688679-CDS-M-pyrifera_M_contig7862:11767..11899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7862 11768..11899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7862.18476.1prot_M-pyrifera_M_contig7862.18476.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7862 5041..11899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7862.18476.1

>prot_M-pyrifera_M_contig7862.18476.1 ID=prot_M-pyrifera_M_contig7862.18476.1|Name=mRNA_M-pyrifera_M_contig7862.18476.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=472bp
MRCITKEKTALFIPNAIAIITAKKEYIFRSFWDREEAFRTLKACHEDSLA
LSASLGEGALPREGSPLSLKSRERESEQRRSLGAKRSSSGSRGSDKDLKD
ADDKGFKSRPPTKRRLPWSGKNERRRSSLVATGAPQTKTKLQRKPLLVPF
HARNMSGASSNTSSSLSVGGVADTVEQLGDLNLSNLEVQLPLRQDLSAEE
EAAGSARSGRREARRGSVANGTAGGRDSGGGSRVVSDESEVDVLGVEGSP
VTAVSLGSTTGGGSPPSKAEEFRLALSSLGDGWLAGSAKHSDIPRHHGAT
VKISAKLSCQLQTFFELFISNDAEKGIPAFHETLGDSDIQATPWKVAGGA
LGMTREIRFVHPISAPIGPSSTRAVKLQRCRLYGEHGLIIETSTHLEDIP
MSDYFQIDDRCVVQPGRDGDSGVCVDVDIKFFKSTMFRKTIEAKSLQETR
EVWESFIVMAKSAIQIRQPGE*
back to top

mRNA from alignment at M-pyrifera_M_contig7862:5023..11899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7862.18476.1 ID=mRNA_M-pyrifera_M_contig7862.18476.1|Name=mRNA_M-pyrifera_M_contig7862.18476.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6877bp|location=Sequence derived from alignment at M-pyrifera_M_contig7862:5023..11899+ (Macrocystis pyrifera P11B4 male)
AAACTACTGTACAGCCACATGCGATGCATCACGAAGGAGAAGACGGCTCT
CTTCATCCCGAACGCGATCGCCATCATAACCGCGAAGAAGGAATACATAT
TTCGGTCGTTCTGGGACAGAGAGGAGGCGTTCCGCACGCTCAAAGCTTGC
CACGAGGACAGCTTGGCGCTGTCCGCGTCCCTTGGCGAAGGCGCCCTGCC
GCGGGAAGGGTCACCCTTGTCCTTGAAGAGCCGGTTAGTTTGATATTTTG
TTTTCGTTCATGGTAATGAAAGCGGCGGCGTTTTGTCGCTCGTACGAAAC
CCTGATGGGAGGTACTGCTGCACGTGACTGGATTTCTTGGTTGGGCACTC
TTTTGATCGCTACACTATGGCCGTAGCCACTCCGAGCCGTCCTCAGATCA
AATTCTGGAGGCGGGCACCCCGAGCGGTTCTCAAGTCAAACGCTTGATGG
GGGCACCCCCCTGTCTATGTCGGGCCATGCTTAGCTTGGGAGATGGGCGG
AGGGTACTCATTTGTTGCTTGCCTCAGCCATTTAACCATTGAGCACCCAT
CTCTTTCGAGCCGAGGAGGGGGAGGGCTTGGAAGTGCAAGTAACAGCATG
CTCTGTGCAGGTTCCATTTGGGTGGTTGGGTGTCACTCCAGTAGGTGCTG
TTCTTTTCGTTGTTGCGTCGACGAGCGTTGAAGTGGTACTGTGCGGTCGC
CGACTTTGTTAACATCATCTTCTCGCGGGCCTAATATCGATATATCCTGT
TCTGGCAAGCCTGATATCGACATACTGGTCTTCTGGCATGCTTAATATCG
ACGGTATTCCCTCTGTCGTCTCTTTCGCTCCCGGCCGACCCTCAGGGAAC
GCGAATCTGAGCAACGCCGAAGCCTTGGGGCGAAACGAAGCAGCAGCGGT
AGCCGAGGCAGCGACAAGGACTTGAAGGACGCGGATGACAAAGGTATTTA
TTTTCGTCTTGGAATGCTTTTTGTGGGCACATCCTCTGTCTTGTCCTGCA
GTGAATCATATATATATATATTTATTTATTTATTTATTTATTTTTTTTGA
ATCATATACGACGGTGCTGTGGTGCTGTGACCTCTGTGACGCCTGTCGCT
AGAAGGACCATATCTGTCCAACGCTACATTGACGTTGTCTATTAATACGG
ACCTCGCTGTTTTTCTGCGGTTTGTCGTGGCGATGGATGTATCGTCGGTC
GCGGGGCCGGCCGCTTTTGCTGGCCTGCTGTCAGCCTCCAGTTGTTATTA
TAGTCGTATTAGGATGCTATTATTGTGTTTTGCAGCTTGGAGGTCTGGTT
TGCGCGTGTTGCCGGCGCTGCGGCGCTGCACACGGCGTCCACCGGCGCAC
GACTCTTTTAGGAAGCGACGTTTAGGCGCTTGAAATGCGGGGCGGGCGGC
GCCTTCGCCTGTCACCTCCGTTAGCCTCGTCCTGCGCGAAAGAGGTATAG
CGTCAAACCGTTCACTCCTTGGACAGATCATGATCTATCTCATCTGTCTA
CAGATAGATCATTTGGTCCTGCGGTTGTGAGAGGATGTATGTGCAAGATC
TGCATACAAGTACAGATATATCACACACAGGAAATCATGGGGCTAGATCA
TGCGGATTATGCGGGTCCCACCCGGCAGCATGAGTTAGCATGAGTTAGAT
CTATACAATATCGGGAATATACCTGCCTTGAAAAAGCTAGATCATGAAGT
GGGAATTATGTACATGTACTGGTATGTTATCTGTCGGAGGTGTGTAACCG
TTTCGCTCGCCCCTTGCTCGTTATCGTCCCCGCTGCTTGCGCTCTCTCTG
CGCTCTTCGCACGCCTGCTCACTGTGCAAAACCCCCCTAACCCGCGTGTC
TCCTACAAGATCGACCGACGCTTTTTCCTCCCTCGCTCTGTCCAACCACG
GCAGGCTTCAAGTCCAGGCCGCCGACGAAGCGGAGGTTGCCGTGGTCGGG
GAAGAACGAGAGACGGAGGTCATCCCTTGTCGCAACAGGTGCCCCACAAA
CTAAAACTAAACTCCAACGGAAACCTCTCCTGGTGCCCTTCGTTTCTGAC
CGCAGGTCACTAAAAGCAGTCGGTACTGACCGTCCGAACAGTTAAGAGTT
TGGACTGCTTTCCTTTCCCGGCATGGATAGGGTTCAGGTTGTTCTACGTA
CCCATCGCGACCGAACCTCGACCCCGGTATCCCAGTCGTGATTGGGCCAT
CAATAGCGTCAATCCACCCTCGTGTCCCTGTTATCTACATACCTGGCACC
GGCAGGCAGTTGTATTTTCGCGATTTGCTTTTTTTCTTCCACTCCGGAAT
TGATTATTGGAGCCTGTGTTGTGTCCACAAACCAGATTATAGCGATGAGT
TCGTATCAAAACAGCAGCAACAAACAGCTGCCGCGCTTACGCGCGACCTC
AATACCTGCAGTATGTATAATTTATCTCAGTAGGTCACCACCTCCTTCTT
TACACCCGTCCTTCTTTTTTCTTCGTCTTTTTTTTTTGTCTGATTTGTGC
CTGTAGGGGGCGCTCCCGAGGAGCACGCACGCAATATGTCGGGCGCTAGC
TCTAACACGAGCAGCAGCCTCTCGGTCGGAGGGGTGGCTGATACAGTAGA
ACAATTAGGAGACCTCAACCTTAGCAACCTGGAGGTGCAGCTGCCCTTAA
GGCAAGACCTCAGTGCTGAGGAGGAGGCGGCCGGGAGCGCGCGGAGTGGG
CGGAGGGAGGCCCGTAGAGGCTCGGTGGCTAACGGCACGGCGGGAGGGAG
AGACAGCGGGGGCGGTAGCCGAGTGGTGTCGGACGAGTCGGAGGTGGACG
TGCTCGGGGTGAGGCGATGGTTGGCGTGAAAAAAACAGTAGACGTAGGCG
TTTCGTTAAGTAACGTACTGCGGGGTGCGGTGCGATGCGGTGCGATATGG
TGCGGCGTGAGGAAGTTGGTGTTTCTTCAGACTTTTGATTGTTTGATGTT
AGCGGCTGTCGTTTTCGTAGGTCAATACTAGAGAGTTCCAGAGGTAGCCG
TGGTGTTTTTGCACGATCGGGCCTTGCTTGGCGGCCCTGTGCGAGAAATA
TCTAATCTACTAAGTAATAGTCGATGCGATGCATGCTGAGATGGTTTTCG
ACTATCGATCGTCCAAGAAGCGCAAGCCTCCGACACACCACAACGCCCTC
CCTGGCATGCATGGCAACACCCTCCCTGGCGCATGGCAACGTCCTCCCTG
ACACATGGGAACGTCCTCTGCTTTTCTTTTTTCTTCTTTTAGGTGGAGGG
TTCTCCTGTCACCGCCGTCTCCCTTGGCTCAACCACTGGAGGGGGCAGTC
CGCCGTCCAAGGCTGAGGAGTTTAGGCTGGCGCTGTCCTCGCTTGGTGAT
GGATGGCTGGCGGGTAGTGCGAAGCATTCCGACATCCCACGTCACCACGG
CGCCACCGTCAAGATTTCTGCGAAGCTTTCGTGCCAATTGCAGGTTCGTA
CGGTGTGTGCCGGGCGTAAGTCAACTGCATCATCACGTCAAGCGTAGCTC
AACTGAGAATGTATAGAGTTGGACGGCGAGTGCTGAAGCGTAGCCCAACC
GACAACCCATGGAGTTGGATGACGAGCGCTGGCACGCCCGCGGTAGCAAC
GATTTCGTAGCGCGTGGTGCGTGGCGGTATTGTCAGGGTTAGAAGTGATC
CTGATGCGGTTCGTGCAGGCTCTTGACATGGCGAGACGCGACGAGAAGAT
GCCCGGTCTTTTGAAGAGGCGACGGTACCGTCGCTGTCGGGAAGCTGCCG
CTGTTGGTTCGTTGGTTACACCGGGTCTTGCTTTTTTATCCTTCCATGCT
GCTACCACGAGTACTGCATGTGAGAATTTTGGATGTGTATGTATGAAGGT
TTTTTGTGCGCGTGGGTGTCTTGTTCTATTTTTTTGTTTCTTTCGGTAAA
AAAAACACGCTTCGAGTATGTAGAGCTACTGCTGTATACTCGTACCTTTT
TTGGTTTCTTCCCTACCTGCAACCCCGAGCTATGGGCTGGACCGATGCCG
ACAGCAAACTTCAGTCTTTCCTTTTCAATCCTGCTGCCCCCTGATCTGTC
GTGCAAATCAGACGTTCTTCGAGCTGTTCATCTCCAACGACGCCGAGAAG
GGGATTCCGGCTTTCCACGAGACTCTCGGGGATTCGGACATCCAAGCGAC
GCCTTGGAAGGTGGCGGGCGGTGCGCTGGGGATGACCCGGGAAATTCGCT
TCGTGCACCCCATATCTGCCCCGATCGGGCCCAGCAGCACTCGAGCAGTC
AAACTACAGCGGTGAGAGCTGGGCGAGGGGTCGGGCGGGGTCAGGTCGTG
CGGGTTACACTTGTCGGCCGCAGGTTTGGTCTGGCACTCGCGTCTATCCT
GTCGCTGGAAGGGGTCGACGGGATGGAGTCAACAGCGCTTGCGGTGCCTT
TGTTTTTTTTCACGCGCCGCATAGATCATATGATGTAGATCATGGATCCC
CGCTTGGTGATGTAGGTCTTCCAAGGCAGATAGATCGTCTACTCCCGATT
TTGTATGATTGCTAGCTCATGCTGCCTGGTGGGGCCTGTCTAGTTGGCAT
GATTTATAAAGTACGTAGGTAGCACATGGTTCCTCGGTATTGTGCAGATC
GCCCTGCACAATAAACCTCTCACAACGGCAAGCGAGGAACTAGATCATCT
AGATCATGATCTATCTGATCTGTCCGAGCTGTGGGGTTGTGTTTTCCCCG
GGTGGGCCCTGAAACGTTGCTCTTTGTACACGGGTGGATGGTGGGTGCCT
TTTTGCCGCTGAAAGGTTCGCGATTGCTCGCCGTAAGACACGTGCGTACG
TACGTCTCGGAAGTGGTCGAGCGGTATCACAGCAGTATACTTGGGAAATG
TTTGTTTCTACGCCCTCTTTTTCGCGGGTAATTGTTCGTTGCGATACTAA
AGCTGCCAGCAAGATGGCGGCGGAAGGCCCGCCAGTGTTCGAGGAGAACG
TTCCTTTGCGCCCGTCGGCGCCTTGCGTAGTCCTGGCCCCGGTAATGTTA
ACGACGTGGCCTTTCAACAGCTTAAGACACAATACGTACTGTAGTTCGCA
CCTCAGGCAGATGGTAGTCCAGTTTTTTCAGGGCAGATATATCGGTATGA
TCTGTATGATGTGCATGATCTGTATCATCTATTATTAGCTCATGTTGACG
TGTGGGAGCCCTGCAATATGCATGATTTAGGACATGTTTCTCGGATGGGC
TCTGTACTACACTGATCCTGCACAGCACCTCGAAACGGCAGGTTAGGATC
TAGATGATCTGTCTCTCCGACGTGTGGAATCGTTGATATTCCGCGCTCAC
TCGTAAGTTACATTTTCATTCCGTGAATTTTCCCAAGCGGTCGGGCGTTG
GGGTTGATTATATAGGGTTAGACTGGGGCCTTGGACTCGAACGAATTCAC
ATGTTCGACAGATCAAGACAGATCATGGTCTAGATCATTTGCCGTTGTGA
GAGGTTGTGCAGGATCTATCTATCTATCTATCTGCGTAGTACAGATCCAG
CCCAGGAAACATGCGCTAGATCGTGCAGATTGTACGGGTCCCACGCGGCA
GCCTGAGCCAGATCATACAGATCATACGACAACGAGAATATATTATCTAT
CTGCCTTGCAAGATCTAGATCACCAAATGGTAATTGATGTTTTTTTTTAC
CATTTTGCCGAAGTTAGGCCAAGGCCTATATCTACATATATATACTCACA
GCCCTAGCCGGCCCTTGGGTGTGTTGATTGATTAGTTTTTCGTCTGGTTC
CTTGTCTTGCCGCCCTTCTTGGTGTATAGCGCCTACCTTACCCGAGCGAC
CTTGCTGCCGTCGCCGTTCCTTGCTGCAGCTGCCGCCTCTACGGAGAGCA
CGGGCTGATCATCGAGACGTCCACACACTTGGAGGACATCCCTATGAGCG
ATTATTTTCAGATAGACGACCGCTGCGTAGTTCAGCCTGGCCGGGACGGT
GACAGCGGAGTGTGCGTCGACGTGGACGTGGAGGCAAGCTGGGGGGGGCT
GGGGTAGCCGCCAAACATTTGTTTTTGTGGGGCTTTGCGTTTGGGTTTCG
AAAACTTGGGTTGTGTTGATGGTTGAGCCATGGGCGGAGGTAGTGATCAT
GTGTTTTAGTGGGGCAATGGTCTGCGCAGCATATGGGGTCCGCGATATTT
TTTTTGGAAAAGTGTGGATGTGGCTGATGTAAGCGTCCGCCGCGGCTTGA
GCGACTCGGGCTTGGGTTGCGTGCCCACGATGGAGGCTTTCGTTTTTCAA
TGATATACGGCACCCCGCGCACCGCTCAGACGACGAACAGAGAAGAGTAG
GTTGCCCGAAGACAAGGCAGATTTGTTTTGGTGAGATAGAGCACTCCTCA
CCGTTCAGACGCATCAAAATAGAAGAATGCTTGTCGAAGTTGACTGTTAC
CTTTCAAGTGTTGAGCGTAAGGTTTTCCAGTGGCGGTAGACATCTCGTAC
GTGAGCGGTTGGTGTTAGCTGTTAGTTATCGCCCGTCTATACGTAGATTT
TACCCATGTTTGTTTGGTCAGATTGACGTCATGCTGTACAGTAATTGTGG
CTACAAACAGTAATCAAATTCAATGTCCAGGTTTTAGCGAAGTTTCTGTG
GCAATGCTGTTGTTGCGACTATGTATGAGTATATGATGCACGTTATTTCC
TCAAACCGCTGTGTTGCGCTTCGAAGCTGATCGCCCGCCGTTGCCCGCCA
ACACGTGTGCCGCTTTTTGGAATACTCCCGTGGTTCAAAGTGCAGATTAA
GTTTTTTAAGAGTACCATGTTTCGCAAGACGATCGAGGCCAAAAGCCTCC
AGGAAACGCGGGAAGTTTGGGAGTCATTCATCGTCATGGCAAAGAGCGCC
ATCCAGATCAGGCAACCTGGTGAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7862:5023..11899+

>mRNA_M-pyrifera_M_contig7862.18476.1 ID=mRNA_M-pyrifera_M_contig7862.18476.1|Name=mRNA_M-pyrifera_M_contig7862.18476.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2832bp|location=Sequence derived from alignment at M-pyrifera_M_contig7862:5023..11899+ (Macrocystis pyrifera P11B4 male)
ATGCGATGCATCACGAAGGAGAAGACGGCTCTCTTCATCCCGAACGCGAT
CGCCATCATAACCGCGAAGAAGGAATACATATTTCGGTCGTTCTGGGACA
GAGAGGAGGCGTTCCGCACGCTCAAAGCTTGCCACGAGGACAGCTTGGCG
CTGTCCGCGTCCCTTGGCGAAGGCGCCCTGCCGCGGGAAGGGTCACCCTT
GTCCTTGAAGAGCCGATGCGATGCATCACGAAGGAGAAGACGGCTCTCTT
CATCCCGAACGCGATCGCCATCATAACCGCGAAGAAGGAATACATATTTC
GGTCGTTCTGGGACAGAGAGGAGGCGTTCCGCACGCTCAAAGCTTGCCAC
GAGGACAGCTTGGCGCTGTCCGCGTCCCTTGGCGAAGGCGCCCTGCCGCG
GGAAGGGTCACCCTTGTCCTTGAAGAGCCGGGAACGCGAATCTGAGCAAC
GCCGAAGCCTTGGGGCGAAACGAAGCAGCAGCGGTAGCCGAGGCAGCGAC
AAGGACTTGAAGGACGCGGATGACAAAGGGAACGCGAATCTGAGCAACGC
CGAAGCCTTGGGGCGAAACGAAGCAGCAGCGGTAGCCGAGGCAGCGACAA
GGACTTGAAGGACGCGGATGACAAAGGCTTCAAGTCCAGGCCGCCGACGA
AGCGGAGGTTGCCGTGGTCGGGGAAGAACGAGAGACGGAGGTCATCCCTT
GTCGCAACAGGTGCCCCACAAACTAAAACTAAACTCCAACGGAAACCTCT
CCTGGTGCCCTTCGCTTCAAGTCCAGGCCGCCGACGAAGCGGAGGTTGCC
GTGGTCGGGGAAGAACGAGAGACGGAGGTCATCCCTTGTCGCAACAGGTG
CCCCACAAACTAAAACTAAACTCCAACGGAAACCTCTCCTGGTGCCCTTC
CACGCACGCAATATGTCGGGCGCTAGCTCTAACACGAGCAGCAGCCTCTC
GGTCGGAGGGGTGGCTGATACAGTAGAACAATTAGGAGACCTCAACCTTA
GCAACCTGGAGGTGCAGCTGCCCTTAAGGCAAGACCTCAGTGCTGAGGAG
GAGGCGGCCGGGAGCGCGCGGAGTGGGCGGAGGGAGGCCCGTAGAGGCTC
GGTGGCTAACGGCACGGCGGGAGGGAGAGACAGCGGGGGCGGTAGCCGAG
TGGTGTCGGACGAGTCGGAGGTGGACGTGCTCGGGCACGCACGCAATATG
TCGGGCGCTAGCTCTAACACGAGCAGCAGCCTCTCGGTCGGAGGGGTGGC
TGATACAGTAGAACAATTAGGAGACCTCAACCTTAGCAACCTGGAGGTGC
AGCTGCCCTTAAGGCAAGACCTCAGTGCTGAGGAGGAGGCGGCCGGGAGC
GCGCGGAGTGGGCGGAGGGAGGCCCGTAGAGGCTCGGTGGCTAACGGCAC
GGCGGGAGGGAGAGACAGCGGGGGCGGTAGCCGAGTGGTGTCGGACGAGT
CGGAGGTGGACGTGCTCGGGGTGGAGGGTTCTCCTGTCACCGCCGTCTCC
CTTGGCTCAACCACTGGAGGGGGCAGTCCGCCGTCCAAGGCTGAGGAGTT
TAGGCTGGCGCTGTCCTCGCTTGGTGATGGATGGCTGGCGGGTAGTGCGA
AGCATTCCGACATCCCACGTCACCACGGCGCCACCGTCAAGATTTCTGCG
AAGCTTTCGTGCCAATTGCAGGTGGAGGGTTCTCCTGTCACCGCCGTCTC
CCTTGGCTCAACCACTGGAGGGGGCAGTCCGCCGTCCAAGGCTGAGGAGT
TTAGGCTGGCGCTGTCCTCGCTTGGTGATGGATGGCTGGCGGGTAGTGCG
AAGCATTCCGACATCCCACGTCACCACGGCGCCACCGTCAAGATTTCTGC
GAAGCTTTCGTGCCAATTGCAGACGTTCTTCGAGCTGTTCATCTCCAACG
ACGCCGAGAAGGGGATTCCGGCTTTCCACGAGACTCTCGGGGATTCGGAC
ATCCAAGCGACGCCTTGGAAGGTGGCGGGCGGTGCGCTGGGGATGACCCG
GGAAATTCGCTTCGTGCACCCCATATCTGCCCCGATCGGGCCCAGCAGCA
CTCGAGCAGTCAAACTACAGCGACGTTCTTCGAGCTGTTCATCTCCAACG
ACGCCGAGAAGGGGATTCCGGCTTTCCACGAGACTCTCGGGGATTCGGAC
ATCCAAGCGACGCCTTGGAAGGTGGCGGGCGGTGCGCTGGGGATGACCCG
GGAAATTCGCTTCGTGCACCCCATATCTGCCCCGATCGGGCCCAGCAGCA
CTCGAGCAGTCAAACTACAGCGCTGCCGCCTCTACGGAGAGCACGGGCTG
ATCATCGAGACGTCCACACACTTGGAGGACATCCCTATGAGCGATTATTT
TCAGATAGACGACCGCTGCGTAGTTCAGCCTGGCCGGGACGGTGACAGCG
GAGTGTGCGTCGACGTGGACCTGCCGCCTCTACGGAGAGCACGGGCTGAT
CATCGAGACGTCCACACACTTGGAGGACATCCCTATGAGCGATTATTTTC
AGATAGACGACCGCTGCGTAGTTCAGCCTGGCCGGGACGGTGACAGCGGA
GTGTGCGTCGACGTGGACATTAAGTTTTTTAAGAGTACCATGTTTCGCAA
GACGATCGAGGCCAAAAGCCTCCAGGAAACGCGGGAAGTTTGGGAGTCAT
TCATCGTCATGGCAAAGAGCGCCATCCAGATCAGGCAACCTGGTGAGTAG
ATTAAGTTTTTTAAGAGTACCATGTTTCGCAAGACGATCGAGGCCAAAAG
CCTCCAGGAAACGCGGGAAGTTTGGGAGTCATTCATCGTCATGGCAAAGA
GCGCCATCCAGATCAGGCAACCTGGTGAGTAG
back to top