mRNA_M-pyrifera_M_contig78612.18474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78612.18474.1
Unique NamemRNA_M-pyrifera_M_contig78612.18474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: A0A5A8CHE5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CHE5_CAFRO)

HSP 1 Score: 281 bits (718), Expect = 2.490e-91
Identity = 144/264 (54.55%), Postives = 182/264 (68.94%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYKRLAPVIQREEARSV-------------GAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQERNGIRGLFRGVHVNYSRSLLSWGIMNSVYEALRQI 756
            NI +TFP++KL+FRQQVE  S   A R +  EG   +YRGVGPPLVQ+ LSM+ MFGLYD Y + +   I+     S+              AALLAGS+EA+LTPLER QT+LQHRH+N  FA  WDV  KLRP G+ E+YRG   ILLRNGP++ LFFTLR P RD +P +       L+ F SGA+LGA IS++FFP+NVAK++MQ+Q+GG    V  T+R   QER G RG+FRGVH+NY+RSL+SWGI+NS YE L  +
Sbjct:   31 NIVITFPVHKLIFRQQVEGKSAVRAARGIAAEGLVNVYRGVGPPLVQKSLSMAAMFGLYDMYLRAILRAIRLHRGCSLEDLAGPWKVGAQASAALLAGSTEAILTPLERAQTLLQHRHFNGHFAHTWDVMKKLRPLGVREYYRGLVPILLRNGPSSVLFFTLRGPVRDVIPAKPSRFWDVLRDFVSGAVLGATISTVFFPINVAKSVMQAQLGGKFPGVVETIRRVKQERGGWRGVFRGVHINYTRSLVSWGIINSTYEILGDL 294          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: A0A7S1C9U2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9U2_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.370e-81
Identity = 137/270 (50.74%), Postives = 188/270 (69.63%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGL---YDWYYKRLAPVIQREEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSL----PGRDHGASL-HLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQERNGIRGLFRGVHVNYSRSLLSWGIMNSVYEALR-----QIDLPPSK 774
            N+ VTFP NKLMFRQQ+E+LSV  A+R MR EGWR LYRGVGPPL Q  +S SLMFGL   Y+ +      V     A  VGA L+AGS+EALL PLER+QT+LQ   +N R+   WDVA  LR +G+ E+YRG   +++RN  + AL+  L++P RD+L    P  + G+    + +F SG LLGA++S+LFFPLNVAK++MQ Q+GGPHA + +TL    ++R G++G++RGV VN SRSL+SWGI+ SV++ +R     ++DL P++
Sbjct:   56 NVVVTFPANKLMFRQQLENLSVTRAFRGMRAEGWRNLYRGVGPPLAQAAISKSLMFGLASDYEAFLLNENVVGSPALAAHVGA-LMAGSTEALLAPLERIQTLLQTSKFNSRYDHAWDVARSLRVHGVREYYRGIRPVVIRNSLSTALYLGLKDPSRDALEAIVPPTERGSVAGFVASFVSGGLLGASLSTLFFPLNVAKSVMQKQVGGPHAPLWATLVDVYRDRGGVQGMYRGVSVNMSRSLMSWGIITSVHDLMRGRRKARLDLEPTR 324          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: UPI0018850C6E (solute carrier family 25 member 51-like n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018850C6E)

HSP 1 Score: 246 bits (627), Expect = 9.180e-78
Identity = 127/252 (50.40%), Postives = 173/252 (68.65%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYKRLAPVIQR--EEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQERN-GIRGLFRGVHVNYSRSLLSWGIMNSVYEALR 750
            NI +TFP+NK+MFRQ +  +S+ SA   +R EG   LYRG+ PPL Q+ +S+S+MFG+YD Y ++L   + R       +GAA+LAG++EALLTP ER+Q ++Q RHY+ R+A+ W  A +LR +GL+E+YRG   ILLRNG +N LFF LRE  + + P     AS     F  GAL+GA IS++ +PLNV KT MQS +GGP+  +  TL    + R   +R LFRGVHVNY+RSL+SWGI+NS YE L+
Sbjct:   31 NITITFPINKIMFRQMLHGVSMWSALGQLRSEGLLFLYRGILPPLFQKTISVSVMFGMYDQYQRQLEGRLPRLGRPLVDMGAAVLAGATEALLTPFERIQILMQDRHYHSRYANTWHAARELRVHGLAEYYRGMVPILLRNGASNVLFFGLRERLKAAAPHGGGRASAAAWDFTCGALIGAFISTVMYPLNVIKTHMQSGVGGPYRGIVETLGEVYRARGRSVRALFRGVHVNYTRSLISWGIINSTYELLK 282          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: A0A6A4WYG9_AMPAM (Solute carrier family 25 member 51 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WYG9_AMPAM)

HSP 1 Score: 244 bits (624), Expect = 2.690e-77
Identity = 132/257 (51.36%), Postives = 172/257 (66.93%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYK-------RLAPVIQREEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQERN-GIRGLFRGVHVNYSRSLLSWGIMNSVYEALR 750
            NI +TFP+NK+MFRQ +  +S+ SA   +R EG   LYRG+ PPL Q+ +S+SLMFG+YD Y +       RL PV+       + AA LAG+SEALLTP ER+Q ++Q RHY+ RFA+ W  A +LR  GL+E+YRG   ILLRN  +N LFF LRE  + + P     AS     FA GAL+GA IS++ +PLNV KT MQS++GGP A V +T     + R   +R LFRGVH+NY+RSL+SWGI+NS YE LR
Sbjct:   32 NITITFPINKVMFRQMLHGVSMWSALGQLRGEGMFFLYRGILPPLFQKTVSVSLMFGMYDQYQRTLRRSAPRLHPVLA-----DMSAAALAGASEALLTPFERLQILMQDRHYHERFANTWHAARQLRTFGLAEYYRGLVPILLRNSASNVLFFGLRERLKAAAPHDGGRASSAAWDFACGALIGAFISTVMYPLNVVKTHMQSRVGGPFAGVLATTAELYRARGRSVRALFRGVHINYTRSLISWGIINSTYELLR 283          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: A0A024GTW6_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GTW6_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.490e-72
Identity = 124/252 (49.21%), Postives = 165/252 (65.48%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYKRLAPVIQREEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQERNG-IRGLFRGVHVNYSRSLLSWGIMNSVYEALRQI 756
            NI +TFP NK+MFRQQ+   +   AY++++ EG   LYRG+ PPL+Q  +S S+MFGLY+W+ + L   I R     + +A L+G++EA+LTP ER QT+LQ   +N +  S +D    +  +GL E YRG TA+LLRNGPAN LFF LR+P R  LP      S  L  F SGALLGAAIS++ +P+NVA+T MQS  GG        L+    ER   IR L+RGV++N+ RSLLSWGI+NS YE L+ I
Sbjct:   56 NIVITFPPNKVMFRQQLYGFTALQAYKNVKDEGITMLYRGIRPPLLQAVVSKSIMFGLYNWFDELLELKIGRHLYTKLLSAALSGTTEAILTPFERAQTLLQTPKFNTKITSSYDALVHINRHGLREHYRGLTAVLLRNGPANMLFFGLRDPIRTFLPSATSSTSKLLNDFFSGALLGAAISTITYPINVARTRMQSVYGGRFIGPFEALQLTYDERGRCIRRLYRGVYMNFIRSLLSWGIINSAYEKLKSI 307          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: A0A0A9X0Z0_LYGHE (Mitochondrial carrier triple repeat protein 1 n=2 Tax=Mirini TaxID=236659 RepID=A0A0A9X0Z0_LYGHE)

HSP 1 Score: 231 bits (589), Expect = 4.490e-72
Identity = 119/256 (46.48%), Postives = 168/256 (65.62%), Query Frame = 1
Query:    1 CNIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYKRLAPVIQREE---ARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKL-RPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQERNGIRGLFRGVHVNYSRSLLSWGIMNSVYEALRQI 756
            CNI VTFP+NK++FRQ + ++S+ +A + +  EG   LYRGV PPL Q+ +S+SLMFG+YD   K   P++Q        ++ AA+ AGS E +L P ER+QTILQH  Y+R   +M    S L R +G SEFYRG   +L RNGP+NA+FF LRE   +  P     A + L+ F  GA++GA  S++F+P NV K  MQS+IGGP  SV + +    +ER  +R  FRGVH+NY+RS +SWG++N+ YE L+++
Sbjct:   29 CNILVTFPINKVIFRQMLHNVSIVNAAKQIAGEGIIHLYRGVLPPLCQKSVSVSLMFGVYD---KCKTPLLQANYNPILSTILAAITAGSIECVLLPFERLQTILQHERYHRDLMNMKHAVSVLWRTHGFSEFYRGLVPVLFRNGPSNAMFFLLREDAMERFPQATSTAGMLLRQFTIGAMIGAMCSTVFYPCNVLKVHMQSRIGGPFQSVPTAISEIYRERGSVRAFFRGVHLNYTRSCISWGVINTAYEGLKRV 281          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: F0WUG2_9STRA (Mitochondrial Carrier (MC) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUG2_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.000e-71
Identity = 122/252 (48.41%), Postives = 164/252 (65.08%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYKRLAPVIQREEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQERNG-IRGLFRGVHVNYSRSLLSWGIMNSVYEALRQI 756
            NI +TFP NK+MFRQQ+   +   AY++++ EG   LYRG+ PPL+Q  +S S+MFGLY+W+ + L   I R     + +A L+G++EA+LTP ER QT+LQ   YN +  S +D    +  +GL E YRG TA+LLRNGPAN LFF LR+P R  LP      +  +  F SGALLGAAIS++ +P+NVA+T MQS  G         LR    ER   +R L+RGV++N+ RSLLSWGI+NS YE L+ I
Sbjct:   56 NIVITFPPNKVMFRQQLYGFTAVQAYKNVKDEGISMLYRGIRPPLMQAVVSKSIMFGLYNWFDELLEQKIGRHLYTQLLSAALSGTTEAILTPFERAQTLLQTPKYNSKITSSYDAMVHINRHGLKEHYRGLTAVLLRNGPANMLFFGLRDPLRTLLPSPTSSTTKLVNDFFSGALLGAAISTITYPINVARTRMQSVYGDRFIGPFEALRLTYDERGRCVRRLYRGVYMNFIRSLLSWGIINSAYEKLKSI 307          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: K3W5I0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5I0_GLOUD)

HSP 1 Score: 231 bits (590), Expect = 1.900e-71
Identity = 122/252 (48.41%), Postives = 162/252 (64.29%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYKRLAPVIQREEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQER-NGIRGLFRGVHVNYSRSLLSWGIMNSVYEALRQI 756
            NI +TFP NK+MFRQQ+  L+   AY++++ EG   LYRGV PPL+Q  +S S+MFGLY+WY + L   +   ++  + AA L+G++EA+L P ER QT+LQ   +NR     +D    L   GL E YRG +AIL RNGP N LFF LREP RDS P  +      +  F  GA+LGA IS++ FP+NVA+T MQS  G P       LR   +ER + +  L+RGVH+N+ RSLLSWGI+NS YE L+ I
Sbjct:   89 NIVITFPPNKIMFRQQLFGLNTWDAYQNVKNEGLAMLYRGVKPPLLQAAVSKSIMFGLYNWYDEFLVERLGSHKSVHLLAAGLSGTTEAVLAPFERAQTLLQTPKFNREITGAYDAIVHLNKFGLREHYRGLSAILFRNGPGNMLFFGLREPLRDSFPRSNSATRRMVNDFVCGAVLGAVISTVSFPINVARTRMQSVYGEPFIGTLQALRLTYEERGHSMSKLYRGVHMNFFRSLLSWGIINSAYEKLKSI 340          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: UPI000719E90E (solute carrier family 25 member 51-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E90E)

HSP 1 Score: 230 bits (587), Expect = 4.120e-71
Identity = 120/262 (45.80%), Postives = 170/262 (64.89%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDW-------YYKRLAPVIQREEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQER-NGIRGLFRGVHVNYSRSLLSWGIMNSVYEALRQIDLP 765
            NI  T+P+ K+ FRQQ+  L+V S+ R +  EG   L+RGV PPL+QR L+M +MFG+YD        +Y    P   R       +A+LAG  EA+LTPLER+QT+LQ   YN R    +D  +KLR  G++E+YRG + ILLRNGP NA+FF LR P ++++P   H      + FASGALLG  IS++F+PL V KT MQ+++GG   S++  + A  +ER + +R +  GVH+NY+RS+LSWG++N  YE LR++  P
Sbjct:   75 NILFTYPVYKVQFRQQLSGLTVGSSVRQLHGEGLLMLWRGVQPPLIQRSLNMGIMFGMYDQSKRLIRRHYPHCPPGFYRP-----ASAMLAGCVEAVLTPLERVQTLLQDPRYNERLRGTYDAFAKLRAYGVAEYYRGLSVILLRNGPCNAVFFGLRHPVKNAMPATTHPLLTLAEHFASGALLGTFISTVFYPLQVVKTRMQAKLGGEFLSIAQAVAAVYRERGHSVRRMLMGVHMNYARSILSWGMVNVTYEILRKLVYP 331          
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Match: A0A5D6Y7V6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7V6_9STRA)

HSP 1 Score: 229 bits (584), Expect = 4.880e-71
Identity = 124/252 (49.21%), Postives = 159/252 (63.10%), Query Frame = 1
Query:    4 NIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRGLSMSLMFGLYDWYYKRLAPVIQREEARSVGAALLAGSSEALLTPLERMQTILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTLREPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQIGGPHASVSSTLRAAIQER-NGIRGLFRGVHVNYSRSLLSWGIMNSVYEALRQI 756
            NI VTFP NK+MFRQQ+  L+   AY+++R EG   LYRGV PPL+Q  +S S+MFGLY+WY + L           + AA L+G++EA+L P ER QT+LQ   +N      +D    L   GL E YRG +AILLRNGP N LFF LREP R S P  D  +   L  F  GA+LGA IS++ FP+NVA+T MQS  G P+      LR    ER + +  L+RGVH+N+ RSLLSWGI+NS YE L+ +
Sbjct:   51 NIVVTFPPNKVMFRQQLFGLNTWDAYQNVRSEGLLMLYRGVKPPLLQAAVSKSIMFGLYNWYDEMLVARFGDRTGIHLLAAGLSGTTEAVLAPFERAQTLLQTPKFNSEIKGAYDAIVHLNQFGLREHYRGLSAILLRNGPGNILFFGLREPLRQSFPVGDSSSVRMLNDFICGAMLGAVISTVSFPINVARTRMQSVYGEPYIGSLEALRLTYAERGHSLSRLYRGVHMNFFRSLLSWGIINSAYEKLKSV 302          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78612.18474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CHE5_CAFRO2.490e-9154.55Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S1C9U2_9STRA1.370e-8150.74Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
UPI0018850C6E9.180e-7850.40solute carrier family 25 member 51-like n=2 Tax=Po... [more]
A0A6A4WYG9_AMPAM2.690e-7751.36Solute carrier family 25 member 51 n=3 Tax=Amphiba... [more]
A0A024GTW6_9STRA2.490e-7249.21Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A0A9X0Z0_LYGHE4.490e-7246.48Mitochondrial carrier triple repeat protein 1 n=2 ... [more]
F0WUG2_9STRA1.000e-7148.41Mitochondrial Carrier (MC) Family putative n=1 Tax... [more]
K3W5I0_GLOUD1.900e-7148.41Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI000719E90E4.120e-7145.80solute carrier family 25 member 51-like n=1 Tax=Pr... [more]
A0A5D6Y7V6_9STRA4.880e-7149.21Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78612contigM-pyrifera_M_contig78612:3..794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.8
Seed ortholog evalue2.9e-60
Seed eggNOG ortholog115417.EPrPW00000018729
Preferred nameSLC25A53
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.Mitochondrial Carrier (MC) Family. Source PGD
EggNOG OGs1MEHY@121069,KOG1519@1,KOG1519@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size792
Cds size792
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.702465-CDS-M-pyrifera_M_contig78612:2..7941622816688.702465-CDS-M-pyrifera_M_contig78612:2..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78612 3..794 +
1692278120.7486928-CDS-M-pyrifera_M_contig78612:2..7941692278120.7486928-CDS-M-pyrifera_M_contig78612:2..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78612 3..794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78612.18474.1prot_M-pyrifera_M_contig78612.18474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78612 3..794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78612.18474.1

>prot_M-pyrifera_M_contig78612.18474.1 ID=prot_M-pyrifera_M_contig78612.18474.1|Name=mRNA_M-pyrifera_M_contig78612.18474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=264bp
CNIAVTFPLNKLMFRQQVEDLSVQSAYRSMRVEGWRRLYRGVGPPLVQRG
LSMSLMFGLYDWYYKRLAPVIQREEARSVGAALLAGSSEALLTPLERMQT
ILQHRHYNRRFASMWDVASKLRPNGLSEFYRGATAILLRNGPANALFFTL
REPFRDSLPGRDHGASLHLKTFASGALLGAAISSLFFPLNVAKTLMQSQI
GGPHASVSSTLRAAIQERNGIRGLFRGVHVNYSRSLLSWGIMNSVYEALR
QIDLPPSKRRNDG*
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mRNA from alignment at M-pyrifera_M_contig78612:3..794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78612.18474.1 ID=mRNA_M-pyrifera_M_contig78612.18474.1|Name=mRNA_M-pyrifera_M_contig78612.18474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig78612:3..794+ (Macrocystis pyrifera P11B4 male)
TGCAATATCGCCGTGACGTTTCCGTTGAACAAGTTGATGTTCCGGCAGCA AGTGGAGGACCTGAGCGTGCAGAGCGCGTACCGTTCGATGCGAGTGGAGG GGTGGAGGAGGCTGTACAGGGGCGTAGGGCCGCCGTTGGTGCAGAGGGGG TTGAGCATGTCGCTCATGTTTGGGCTCTACGATTGGTACTACAAGCGGCT GGCGCCAGTGATCCAACGAGAAGAAGCACGAAGTGTGGGAGCCGCGCTGC TGGCCGGGTCAAGTGAGGCTCTGCTCACACCCCTAGAACGCATGCAGACG ATTCTGCAACATCGCCACTACAACCGCAGGTTTGCGTCCATGTGGGATGT GGCTTCCAAGTTGCGACCAAATGGACTCTCTGAGTTCTACAGAGGAGCTA CTGCCATTCTCCTCCGCAACGGGCCTGCAAACGCCCTCTTCTTCACGCTA CGAGAACCCTTTCGAGACTCCCTACCGGGCAGAGACCACGGCGCATCCTT GCATCTCAAGACCTTCGCCTCGGGAGCTCTTCTGGGCGCCGCCATCTCCT CCCTCTTCTTCCCCCTCAACGTGGCCAAGACGCTCATGCAGTCCCAAATA GGAGGGCCCCACGCCTCCGTCTCCAGCACCCTCCGCGCCGCCATCCAGGA GAGGAACGGCATCCGGGGGCTCTTCCGAGGAGTGCACGTCAACTACTCCA GGTCGCTCCTCTCCTGGGGCATCATGAACTCCGTCTACGAGGCACTCAGA CAAATCGACCTCCCGCCCTCCAAGAGGAGAAACGATGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78612:3..794+

>mRNA_M-pyrifera_M_contig78612.18474.1 ID=mRNA_M-pyrifera_M_contig78612.18474.1|Name=mRNA_M-pyrifera_M_contig78612.18474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1584bp|location=Sequence derived from alignment at M-pyrifera_M_contig78612:3..794+ (Macrocystis pyrifera P11B4 male)
TGCAATATCGCCGTGACGTTTCCGTTGAACAAGTTGATGTTCCGGCAGCA
AGTGGAGGACCTGAGCGTGCAGAGCGCGTACCGTTCGATGCGAGTGGAGG
GGTGGAGGAGGCTGTACAGGGGCGTAGGGCCGCCGTTGGTGCAGAGGGGG
TTGAGCATGTCGCTCATGTTTGGGCTCTACGATTGGTACTACAAGCGGCT
GGCGCCAGTGATCCAACGAGAAGAAGCACGAAGTGTGGGAGCCGCGCTGC
TGGCCGGGTCAAGTGAGGCTCTGCTCACACCCCTAGAACGCATGCAGACG
ATTCTGCAACATCGCCACTACAACCGCAGGTTTGCGTCCATGTGGGATGT
GGCTTCCAAGTTGCGACCAAATGGACTCTCTGAGTTCTACAGAGGAGCTA
CTGCCATTCTCCTCCGCAACGGGCCTGCAAACGCCCTCTTCTTCACGCTA
CGAGAACCCTTTCGAGACTCCCTACCGGGCAGAGACCACGGCGCATCCTT
GCATCTCAAGACCTTCGCCTCGGGAGCTCTTCTGGGCGCCGCCATCTCCT
CCCTCTTCTTCCCCCTCAACGTGGCCAAGACGCTCATGCAGTCCCAAATA
GGAGGGCCCCACGCCTCCGTCTCCAGCACCCTCCGCGCCGCCATCCAGGA
GAGGAACGGCATCCGGGGGCTCTTCCGAGGAGTGCACGTCAACTACTCCA
GGTCGCTCCTCTCCTGGGGCATCATGAACTCCGTCTACGAGGCACTCAGA
CAAATCGACCTCCCGCCCTCCAAGAGGAGAAACGATGGATGATGCAATAT
CGCCGTGACGTTTCCGTTGAACAAGTTGATGTTCCGGCAGCAAGTGGAGG
ACCTGAGCGTGCAGAGCGCGTACCGTTCGATGCGAGTGGAGGGGTGGAGG
AGGCTGTACAGGGGCGTAGGGCCGCCGTTGGTGCAGAGGGGGTTGAGCAT
GTCGCTCATGTTTGGGCTCTACGATTGGTACTACAAGCGGCTGGCGCCAG
TGATCCAACGAGAAGAAGCACGAAGTGTGGGAGCCGCGCTGCTGGCCGGG
TCAAGTGAGGCTCTGCTCACACCCCTAGAACGCATGCAGACGATTCTGCA
ACATCGCCACTACAACCGCAGGTTTGCGTCCATGTGGGATGTGGCTTCCA
AGTTGCGACCAAATGGACTCTCTGAGTTCTACAGAGGAGCTACTGCCATT
CTCCTCCGCAACGGGCCTGCAAACGCCCTCTTCTTCACGCTACGAGAACC
CTTTCGAGACTCCCTACCGGGCAGAGACCACGGCGCATCCTTGCATCTCA
AGACCTTCGCCTCGGGAGCTCTTCTGGGCGCCGCCATCTCCTCCCTCTTC
TTCCCCCTCAACGTGGCCAAGACGCTCATGCAGTCCCAAATAGGAGGGCC
CCACGCCTCCGTCTCCAGCACCCTCCGCGCCGCCATCCAGGAGAGGAACG
GCATCCGGGGGCTCTTCCGAGGAGTGCACGTCAACTACTCCAGGTCGCTC
CTCTCCTGGGGCATCATGAACTCCGTCTACGAGGCACTCAGACAAATCGA
CCTCCCGCCCTCCAAGAGGAGAAACGATGGATGA
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