mRNA_M-pyrifera_M_contig78611.18472.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78611.18472.1
Unique NamemRNA_M-pyrifera_M_contig78611.18472.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: UPI001F003361 (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase n=1 Tax=Desulfoluna sp. ASN36 TaxID=2810562 RepID=UPI001F003361)

HSP 1 Score: 97.8 bits (242), Expect = 4.210e-23
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:   85 MRFRPCIDLHDGVVKQIVGGTLRDGEE-PVTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            M+FRPCIDLH GVVKQIVGGTL+DG++ P TNFAAT  A+ FA LYR+DGLTGGH+IQLG
Sbjct:    1 MKFRPCIDLHQGVVKQIVGGTLKDGDDAPTTNFAATHPASWFAELYRKDGLTGGHIIQLG 60
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BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: A0A067G4P4_CITSI (Uncharacterized protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067G4P4_CITSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.230e-22
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 KTPNCSTHTPHSTQFRISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTLRD----GEEPVTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            K  N S + P S+   +S P+ L +R  +RFRPCID+H G VKQIVG TL+D    G + VTNF + KSAAEFA+LY+EDGLTGGH I LG
Sbjct:   29 KNNNSSFYAPSSS---LSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG 116
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BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: A0A7J0FI15_9ERIC (Aldolase-type TIM barrel family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FI15_9ERIC)

HSP 1 Score: 93.2 bits (230), Expect = 1.510e-22
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   49 ISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTLRD----GEEPVTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            IS P ++ I+   RFRPCID+H G VKQIVG TL+D    G   VTNF + KSAAE+ASLY+EDGLTGGHVI LG
Sbjct:   36 ISRPRAMSIKCGARFRPCIDIHKGKVKQIVGSTLQDLKEGGSSLVTNFESDKSAAEYASLYKEDGLTGGHVIMLG 110
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BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: UPI00053F4502 (1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic isoform X2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=UPI00053F4502)

HSP 1 Score: 96.3 bits (238), Expect = 2.190e-22
Identity = 50/75 (66.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   49 ISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTLRDGEEP----VTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            IS P  L +R  +RFRPCID+H G VKQIVG TLRD +E     VTNF + KSAAEFA LY+EDGLTGGHVI LG
Sbjct:   44 ISKPLRLSVRCAVRFRPCIDIHKGKVKQIVGSTLRDTKEGGSTLVTNFESDKSAAEFAKLYKEDGLTGGHVIMLG 118
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BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: A0A834W076_9FABA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W076_9FABA)

HSP 1 Score: 96.3 bits (238), Expect = 4.560e-22
Identity = 53/94 (56.38%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   10 NCSTHTPHSTQFRISSPTSLPIRPK------MRFRPCIDLHDGVVKQIVGGTLRD----GEEPVTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            N  T+  H   F IS P S   +P+      +RFRPCID+H G VKQIVG TL+D    G  PVTNF + KSAAE+A+LY+EDGLTGGHVI LG
Sbjct:   20 NAPTYGLHKRGFVISWPFSASRKPRSSIHCSVRFRPCIDIHKGKVKQIVGSTLQDLEGDGSNPVTNFVSDKSAAEYANLYKEDGLTGGHVIMLG 113
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BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: D7TJ73_VITVI (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=5 Tax=Vitis TaxID=3603 RepID=D7TJ73_VITVI)

HSP 1 Score: 96.3 bits (238), Expect = 4.900e-22
Identity = 50/75 (66.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   49 ISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTLRDGEEP----VTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            IS P  L +R  +RFRPCID+H G VKQIVG TLRD +E     VTNF + KSAAEFA LY+EDGLTGGHVI LG
Sbjct:   44 ISKPLRLSVRCAVRFRPCIDIHKGKVKQIVGSTLRDTKEGGSTLVTNFESDKSAAEFAKLYKEDGLTGGHVIMLG 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: V4S7H3_CITCL (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=5 Tax=Citrus TaxID=2706 RepID=V4S7H3_CITCL)

HSP 1 Score: 94.4 bits (233), Expect = 2.580e-21
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 KTPNCSTHTPHSTQFRISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTLRD----GEEPVTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            K  N S + P S+   +S P+ L +R  +RFRPCID+H G VKQIVG TL+D    G + VTNF + KSAAEFA+LY+EDGLTGGH I LG
Sbjct:   29 KNNNSSFYAPSSS---LSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: A0A7S2M401_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2M401_9DINO)

HSP 1 Score: 88.2 bits (217), Expect = 6.080e-21
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   85 MRFRPCIDLHDGVVKQIVGGTLRD-GEEPVTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            MRFRPCID+H G VKQIVGGTL+D G  PVTNF A + +  FA  YREDGLTGGHV+ LG
Sbjct:   13 MRFRPCIDIHQGQVKQIVGGTLKDEGAGPVTNFTAAQPSTYFAERYREDGLTGGHVVMLG 72
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BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: A0A2Z7CI81_9LAMI (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CI81_9LAMI)

HSP 1 Score: 93.2 bits (230), Expect = 6.300e-21
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   31 HSTQFRISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTLRDGEEP----VTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            H+T   +S P  L ++  +RFRPCID+H G VKQIVG TL+D +E     +TNF + KSA E+A +YR+DGLTGGHVI LG
Sbjct:   29 HATPRLLSRPPKLAVKCGVRFRPCIDIHKGKVKQIVGSTLQDSKEDGPNLITNFVSDKSATEYAKMYRDDGLTGGHVIMLG 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Match: A0A2R6QW08_ACTCC (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QW08_ACTCC)

HSP 1 Score: 93.2 bits (230), Expect = 6.480e-21
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   49 ISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTLRD----GEEPVTNFAATKSAAEFASLYREDGLTGGHVIQLG 261
            IS P ++ I+   RFRPCID+H G VKQIVG TL+D    G   VTNF + KSAAE+ASLY+EDGLTGGHVI LG
Sbjct:   37 ISRPRAMSIKCGARFRPCIDIHKGKVKQIVGSTLQDLKEGGSSLVTNFESDKSAAEYASLYKEDGLTGGHVIMLG 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78611.18472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F0033614.210e-2376.67phosphoribosylformimino-5-aminoimidazole carboxami... [more]
A0A067G4P4_CITSI1.230e-2257.14Uncharacterized protein (Fragment) n=1 Tax=Citrus ... [more]
A0A7J0FI15_9ERIC1.510e-2264.00Aldolase-type TIM barrel family protein n=1 Tax=Ac... [more]
UPI00053F45022.190e-2266.671-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)me... [more]
A0A834W076_9FABA4.560e-2256.381-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
D7TJ73_VITVI4.900e-2266.671-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
V4S7H3_CITCL2.580e-2157.141-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
A0A7S2M401_9DINO6.080e-2170.00Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2Z7CI81_9LAMI6.300e-2155.561-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]
A0A2R6QW08_ACTCC6.480e-2164.001-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78611contigM-pyrifera_M_contig78611:1..342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.1
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2711.XP_006481767.1
KEGG rclassRC00945
KEGG koko:K01814
KEGG ReactionR04640
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Hectar predicted targeting categoryother localisation
GOsGO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
EggNOG OGs37JVT@33090,3GCV3@35493,COG0106@1,KOG3055@2759
EC5.3.1.16
COG Functional cat.E
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.6220374-CDS-M-pyrifera_M_contig78611:0..491622816688.6220374-CDS-M-pyrifera_M_contig78611:0..49Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78611 1..49 -
1692278120.6887572-CDS-M-pyrifera_M_contig78611:0..491692278120.6887572-CDS-M-pyrifera_M_contig78611:0..49Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78611 1..49 -
1622816688.6339293-CDS-M-pyrifera_M_contig78611:130..3421622816688.6339293-CDS-M-pyrifera_M_contig78611:130..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78611 131..342 -
1692278120.7116864-CDS-M-pyrifera_M_contig78611:130..3421692278120.7116864-CDS-M-pyrifera_M_contig78611:130..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78611 131..342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78611.18472.1prot_M-pyrifera_M_contig78611.18472.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78611 1..342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78611.18472.1

>prot_M-pyrifera_M_contig78611.18472.1 ID=prot_M-pyrifera_M_contig78611.18472.1|Name=mRNA_M-pyrifera_M_contig78611.18472.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
KTPNCSTHTPHSTQFRISSPTSLPIRPKMRFRPCIDLHDGVVKQIVGGTL
RDGEEPVTNFAATKSAAEFASLYREDGLTGGHVIQLG
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mRNA from alignment at M-pyrifera_M_contig78611:1..342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78611.18472.1 ID=mRNA_M-pyrifera_M_contig78611.18472.1|Name=mRNA_M-pyrifera_M_contig78611.18472.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig78611:1..342- (Macrocystis pyrifera P11B4 male)
AAAACACCCAATTGCTCCACACATACTCCCCATTCCACTCAATTCCGTAT
TTCCTCGCCAACCTCACTCCCCATTCGGCCCAAAATGCGATTTCGTCCAT
GTATCGACCTGCATGATGGGGTTGTAAAGCAGATTGTGGGTGGAACGTTG
CGAGATGGTGAGGAACCGGTGACTAACTTCGCTGCAACAAAATCTGCTGC
CGAATTCGCTTCGTACACTGCACATGTTCCCCACAATCCCCCCTTACCCA
AATCATACACTCCTACCCAACCTATTCACCACCTTTACTTCAGGTTGTAT
CGCGAAGATGGGCTCACAGGAGGCCATGTCATCCAACTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78611:1..342-

>mRNA_M-pyrifera_M_contig78611.18472.1 ID=mRNA_M-pyrifera_M_contig78611.18472.1|Name=mRNA_M-pyrifera_M_contig78611.18472.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig78611:1..342- (Macrocystis pyrifera P11B4 male)
AAAACACCCAATTGCTCCACACATACTCCCCATTCCACTCAATTCCGTAT
TTCCTCGCCAACCTCACTCCCCATTCGGCCCAAAATGCGATTTCGTCCAT
GTATCGACCTGCATGATGGGGTTGTAAAGCAGATTGTGGGTGGAACGTTG
CGAGATGGTGAGGAACCGGTGACTAACTTCGCTGCAACAAAATCTGCTGC
CGAATTCGCTTCAAAACACCCAATTGCTCCACACATACTCCCCATTCCAC
TCAATTCCGTATTTCCTCGCCAACCTCACTCCCCATTCGGCCCAAAATGC
GATTTCGTCCATGTATCGACCTGCATGATGGGGTTGTAAAGCAGATTGTG
GGTGGAACGTTGCGAGATGGTGAGGAACCGGTGACTAACTTCGCTGCAAC
AAAATCTGCTGCCGAATTCGCTTCGTTGTATCGCGAAGATGGGCTCACAG
GAGGCCATGTCATCCAACTTGGCGTTGTATCGCGAAGATGGGCTCACAGG
AGGCCATGTCATCCAACTTGGC
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