mRNA_M-pyrifera_M_contig78610.18471.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78610.18471.1
Unique NamemRNA_M-pyrifera_M_contig78610.18471.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78610.18471.1 vs. uniprot
Match: A0A1W4WQV4_AGRPL (centrosomal protein of 164 kDa isoform X1 n=4 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4WQV4_AGRPL)

HSP 1 Score: 50.8 bits (120), Expect = 7.150e-6
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   67 LPPGWQKIWDEGNECFYYFNEETEESQWEAP 159
            LPPGW+  +DE  +C+YYFN+ET ++QWE P
Sbjct:   54 LPPGWKPFYDETRKCYYYFNKETNKTQWEHP 84
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BLAST of mRNA_M-pyrifera_M_contig78610.18471.1 vs. uniprot
Match: A0A0M9VVN6_9HYPO (WW domain-containing protein n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M9VVN6_9HYPO)

HSP 1 Score: 48.5 bits (114), Expect = 4.570e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   46 PAGDDEDLPPGWQKIWDEGNECFYYFNEETEESQWEAP 159
            P GD   LP GW  IWD  N+ +YY NE+T ++QWEAP
Sbjct:   51 PPGDRPPLPQGWIPIWDHVNQRWYYANEQTGQTQWEAP 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78610.18471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1W4WQV4_AGRPL7.150e-658.06centrosomal protein of 164 kDa isoform X1 n=4 Tax=... [more]
A0A0M9VVN6_9HYPO4.570e-555.26WW domain-containing protein n=1 Tax=Escovopsis we... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78610contigM-pyrifera_M_contig78610:88..255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.5887918-CDS-M-pyrifera_M_contig78610:87..2551622816688.5887918-CDS-M-pyrifera_M_contig78610:87..255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78610 88..255 -
1692278120.6775436-CDS-M-pyrifera_M_contig78610:87..2551692278120.6775436-CDS-M-pyrifera_M_contig78610:87..255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78610 88..255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78610.18471.1prot_M-pyrifera_M_contig78610.18471.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78610 88..255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78610.18471.1

>prot_M-pyrifera_M_contig78610.18471.1 ID=prot_M-pyrifera_M_contig78610.18471.1|Name=mRNA_M-pyrifera_M_contig78610.18471.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
AAAEEEEAAADGGETPAGDDEDLPPGWQKIWDEGNECFYYFNEETEESQW
EAPTA*
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mRNA from alignment at M-pyrifera_M_contig78610:88..255-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78610.18471.1 ID=mRNA_M-pyrifera_M_contig78610.18471.1|Name=mRNA_M-pyrifera_M_contig78610.18471.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig78610:88..255- (Macrocystis pyrifera P11B4 male)
GCAGCTGCAGAAGAGGAAGAAGCTGCTGCGGATGGAGGAGAGACCCCAGC
TGGAGACGACGAAGATCTTCCTCCTGGCTGGCAAAAGATTTGGGACGAAG
GCAACGAATGCTTCTATTACTTCAACGAAGAAACAGAAGAGTCACAATGG
GAAGCACCGACCGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78610:88..255-

>mRNA_M-pyrifera_M_contig78610.18471.1 ID=mRNA_M-pyrifera_M_contig78610.18471.1|Name=mRNA_M-pyrifera_M_contig78610.18471.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig78610:88..255- (Macrocystis pyrifera P11B4 male)
GCAGCTGCAGAAGAGGAAGAAGCTGCTGCGGATGGAGGAGAGACCCCAGC
TGGAGACGACGAAGATCTTCCTCCTGGCTGGCAAAAGATTTGGGACGAAG
GCAACGAATGCTTCTATTACTTCAACGAAGAAACAGAAGAGTCACAATGG
GAAGCACCGACCGCGTGAGCAGCTGCAGAAGAGGAAGAAGCTGCTGCGGA
TGGAGGAGAGACCCCAGCTGGAGACGACGAAGATCTTCCTCCTGGCTGGC
AAAAGATTTGGGACGAAGGCAACGAATGCTTCTATTACTTCAACGAAGAA
ACAGAAGAGTCACAATGGGAAGCACCGACCGCGTGA
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