mRNA_M-pyrifera_M_contig78609.18469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78609.18469.1
Unique NamemRNA_M-pyrifera_M_contig78609.18469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78609.18469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78609contigM-pyrifera_M_contig78609:3..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog981085.XP_010093568.1
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGs37QA6@33090,3G7J7@35493,4JFQ9@91835,KOG1947@1,KOG1947@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.4771464-CDS-M-pyrifera_M_contig78609:2..5661622816688.4771464-CDS-M-pyrifera_M_contig78609:2..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78609 3..566 +
1692278120.6147265-CDS-M-pyrifera_M_contig78609:2..5661692278120.6147265-CDS-M-pyrifera_M_contig78609:2..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78609 3..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78609.18469.1prot_M-pyrifera_M_contig78609.18469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78609 3..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78609.18469.1

>prot_M-pyrifera_M_contig78609.18469.1 ID=prot_M-pyrifera_M_contig78609.18469.1|Name=mRNA_M-pyrifera_M_contig78609.18469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
LTALGLGSCPGVTDAGLEILRRGTRGGLHALSARSLHRVTSDGLSMLLQT
STSLLHLELDDCPRLDNTVASAFAKLPKLRTLSLNSCPNLGNPVVDSIPA
SLCFISLRNMTSLTDDAAIRLWRMGRNLRTADLSGCIKLTDAAIQPLTKP
IAADAPRLCTLCVASCPLITPDVLTAAAAARHGAMAIL
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mRNA from alignment at M-pyrifera_M_contig78609:3..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78609.18469.1 ID=mRNA_M-pyrifera_M_contig78609.18469.1|Name=mRNA_M-pyrifera_M_contig78609.18469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig78609:3..566+ (Macrocystis pyrifera P11B4 male)
TTAACTGCACTAGGACTTGGATCATGTCCTGGTGTTACTGATGCTGGGTT
GGAAATTCTACGTCGTGGTACACGTGGGGGTCTTCATGCACTCTCTGCAA
GATCACTTCATCGTGTCACAAGTGATGGACTGAGCATGTTGCTGCAGACG
TCTACTTCTCTTCTTCACTTGGAACTTGATGATTGTCCACGTCTTGATAA
CACTGTTGCATCAGCGTTTGCCAAACTTCCAAAACTCCGAACACTCTCTC
TCAATTCATGCCCAAACCTTGGAAACCCTGTTGTGGATTCCATTCCTGCA
TCACTTTGTTTCATCTCATTGCGAAACATGACAAGTCTCACGGATGACGC
TGCGATACGCTTGTGGCGCATGGGAAGGAACTTGCGGACAGCCGATCTTT
CTGGATGCATCAAGCTGACTGATGCAGCAATTCAACCACTCACAAAACCA
ATTGCAGCAGATGCACCACGTCTCTGCACACTATGTGTGGCATCATGCCC
ACTCATCACCCCAGATGTCCTCACAGCAGCAGCAGCAGCTCGTCATGGAG
CAATGGCAATTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78609:3..566+

>mRNA_M-pyrifera_M_contig78609.18469.1 ID=mRNA_M-pyrifera_M_contig78609.18469.1|Name=mRNA_M-pyrifera_M_contig78609.18469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig78609:3..566+ (Macrocystis pyrifera P11B4 male)
TTAACTGCACTAGGACTTGGATCATGTCCTGGTGTTACTGATGCTGGGTT
GGAAATTCTACGTCGTGGTACACGTGGGGGTCTTCATGCACTCTCTGCAA
GATCACTTCATCGTGTCACAAGTGATGGACTGAGCATGTTGCTGCAGACG
TCTACTTCTCTTCTTCACTTGGAACTTGATGATTGTCCACGTCTTGATAA
CACTGTTGCATCAGCGTTTGCCAAACTTCCAAAACTCCGAACACTCTCTC
TCAATTCATGCCCAAACCTTGGAAACCCTGTTGTGGATTCCATTCCTGCA
TCACTTTGTTTCATCTCATTGCGAAACATGACAAGTCTCACGGATGACGC
TGCGATACGCTTGTGGCGCATGGGAAGGAACTTGCGGACAGCCGATCTTT
CTGGATGCATCAAGCTGACTGATGCAGCAATTCAACCACTCACAAAACCA
ATTGCAGCAGATGCACCACGTCTCTGCACACTATGTGTGGCATCATGCCC
ACTCATCACCCCAGATGTCCTCACAGCAGCAGCAGCAGCTCGTCATGGAG
CAATGGCAATTCTTTTAACTGCACTAGGACTTGGATCATGTCCTGGTGTT
ACTGATGCTGGGTTGGAAATTCTACGTCGTGGTACACGTGGGGGTCTTCA
TGCACTCTCTGCAAGATCACTTCATCGTGTCACAAGTGATGGACTGAGCA
TGTTGCTGCAGACGTCTACTTCTCTTCTTCACTTGGAACTTGATGATTGT
CCACGTCTTGATAACACTGTTGCATCAGCGTTTGCCAAACTTCCAAAACT
CCGAACACTCTCTCTCAATTCATGCCCAAACCTTGGAAACCCTGTTGTGG
ATTCCATTCCTGCATCACTTTGTTTCATCTCATTGCGAAACATGACAAGT
CTCACGGATGACGCTGCGATACGCTTGTGGCGCATGGGAAGGAACTTGCG
GACAGCCGATCTTTCTGGATGCATCAAGCTGACTGATGCAGCAATTCAAC
CACTCACAAAACCAATTGCAGCAGATGCACCACGTCTCTGCACACTATGT
GTGGCATCATGCCCACTCATCACCCCAGATGTCCTCACAGCAGCAGCAGC
AGCTCGTCATGGAGCAATGGCAATTCTT
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